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Volumn 815, Issue , 2012, Pages 3-13

Prediction of protein tertiary structures using MUFOLD

Author keywords

Molecular dynamics simulation; Multidimensional scaling; Protein structure prediction

Indexed keywords

PROTEIN;

EID: 84555189603     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-424-7_1     Document Type: Article
Times cited : (7)

References (18)
  • 1
    • 0014693695 scopus 로고
    • A possible three-dimensional structure of bovine alpha-lactalbumin based on that of hen's eggwhite lysozyme
    • Browne, W. J., North, A. C., Phillips, D. C., Brew, K., Vanaman, T. C., and Hill, R. L. 1969. A possible three-dimensional structure of bovine alpha-lactalbumin based on that of hen's eggwhite lysozyme. J. Mol. Biol. 42:65-86.
    • (1969) J. Mol. Biol. , vol.42 , pp. 65-86
    • Browne, W.J.1    North, A.C.2    Phillips, D.C.3    Brew, K.4    Vanaman, T.C.5    Hill, R.L.6
  • 2
    • 0034764117 scopus 로고    scopus 로고
    • The way to NMR structures of proteins
    • DOI 10.1038/nsb1101-923
    • K. Wuthrich, The way to NMR structures of proteins, Nature Structural Biology 2001; 8, 923-925. (Pubitemid 33032357)
    • (2001) Nature Structural Biology , vol.8 , Issue.11 , pp. 923-925
    • Wuthrich, K.1
  • 4
    • 38549097071 scopus 로고    scopus 로고
    • The UniProt Consortium. The Universal Protein Resource (UniProt)
    • The UniProt Consortium. The Universal Protein Resource (UniProt). Nucleic Acids Res. 2008; 36:D190-D195.
    • (2008) Nucleic Acids Res , vol.36
  • 5
    • 0015361994 scopus 로고    scopus 로고
    • The formation and stabilization of protein structure
    • Anfinsen, C.,"The formation and stabilization of protein structure". Biochem. J. 128 (4): 737-749.
    • Biochem. J. , vol.128 , Issue.4 , pp. 737-749
    • Anfinsen, C.1
  • 6
    • 0014693695 scopus 로고
    • A possible three-dimensional structure of bovine alpha-lactalbumin based on that of hen's eggwhite lysozyme
    • Browne, W. J., North, A. C., Phillips, D. C., Brew, K., Vanaman, T. C., and Hill,R. L. 1969. A possible three-dimensional structure of bovine alpha-lactalbumin based on that of hen's eggwhite lysozyme. J. Mol. Biol. 42:65-86.
    • (1969) J. Mol. Biol. , vol.42 , pp. 65-86
    • Browne, W.J.1    North, A.C.2    Phillips, D.C.3    Brew, K.4    Vanaman, T.C.5    Hillr, L.6
  • 7
    • 0023430366 scopus 로고
    • Monte carlo-minimization approach to the multiple-minima problem in protein folding, Proc
    • HA
    • HA. Monte carlo-minimization approach to the multiple-minima problem in protein folding, Proc. Natl. Acad. Sci. 1987; 84: 6611-6615.
    • (1987) Natl. Acad. Sci. , vol.84 , pp. 6611-6615
  • 9
    • 0035830958 scopus 로고    scopus 로고
    • Prospects for ab initio protein structural genomics
    • DOI 10.1006/jmbi.2000.4459
    • Simons KT, Strauss C, Baker D. Prospects for ab initio protein structural genomics. J. Mol. Biol. 2001; 306:1191-1199. (Pubitemid 33030014)
    • (2001) Journal of Molecular Biology , vol.306 , Issue.5 , pp. 1191-1199
    • Simons, K.T.1    Strauss, C.2    Baker, D.3
  • 10
    • 0041843696 scopus 로고    scopus 로고
    • TOUCHSTONE II: A new approach to ab initio protein structure prediction
    • Zhang Y, Kolinski A, Skolnick J. TOUCHSTONE II: A New Approach to Ab Initio Protein Structure Prediction. Biophys. J. 2003; 85:1145-1164. (Pubitemid 36909676)
    • (2003) Biophysical Journal , vol.85 , Issue.2 , pp. 1145-1164
    • Zhang, Y.1    Kolinski, A.2    Skolnick, J.3
  • 11
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known three-dimensional structure
    • Bowie JU, Luthy R, Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science 1991; 253:164-170. (Pubitemid 21917131)
    • (1991) Science , vol.253 , Issue.5016 , pp. 164-170
    • Bowie, J.U.1    Luthy, R.2    Eisenberg, D.3
  • 12
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • DOI 10.1006/jmbi.1993.1626
    • Sali A, Blundell TL. Comparative protein modelling by satisfaction of spatial constraints. J Mol Biol 1993; 234:779-815. (Pubitemid 24007801)
    • (1993) Journal of Molecular Biology , vol.234 , Issue.3 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 13
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • DOI 10.1093/nar/gki408
    • Soding J, Biegert A, Lupas A. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Research, 2005, 33:W244-W248. (Pubitemid 44529917)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Soding, J.1    Biegert, A.2    Lupas, A.N.3
  • 14
    • 0031585984 scopus 로고    scopus 로고
    • Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
    • DOI 10.1006/jmbi.1997.0959
    • Simons KT, Kooperberg C, Huang E, Baker D, Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions, J. Mol. Biol. 1997; 268:209-225. (Pubitemid 27192690)
    • (1997) Journal of Molecular Biology , vol.268 , Issue.1 , pp. 209-225
    • Simons, K.T.1    Kooperberg, C.2    Huang, E.3    Baker, D.4
  • 15
    • 0034663738 scopus 로고    scopus 로고
    • Protein threading using PROSPECT: Design and evaluation
    • DOI 10.1002/1097-0134(2000 0815)40:3<343::AI D-PROT10>3.0.CO;2-S
    • Xu Y, Xu D. Protein threading using PROSPECT: Design and evaluation. Proteins: Struct Funct Bioinformatics 2000; 40:343-354. (Pubitemid 30624443)
    • (2000) Proteins: Structure, Function and Genetics , vol.40 , Issue.3 , pp. 343-354
    • Xu, Y.1    Xu, D.2
  • 16
    • 2942552020 scopus 로고    scopus 로고
    • Protein structure prediction via combinatorial assembly of sub-structural units
    • Inbar Y, Benyamini H, Nussinov R, Wolfson HJ. Protein structure prediction via combinatorial assembly of sub-structural units. Bioinformatics 2003; 19:158-168.
    • (2003) Bioinformatics , vol.19 , pp. 158-168
    • Inbar, Y.1    Benyamini, H.2    Nussinov, R.3    Wolfson, H.J.4
  • 17
    • 3142764482 scopus 로고    scopus 로고
    • Development and large scale benchmark testing of the PROSPECTOR-3 threading algorithm
    • DOI 10.1002/prot.20106
    • Skolnick J, Kihara D, Zhang Y. Development and large scale benchmark testing of the PROSPECTOR-3 threading algorithm. Proteins: Struct Funct Bioinformatics 2004; 56:502-518. (Pubitemid 38924963)
    • (2004) Proteins: Structure, Function and Genetics , vol.56 , Issue.3 , pp. 502-518
    • Skolnick, J.1    Kihara, D.2    Zhang, Y.3
  • 18
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • Zhang Y. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 2008; 9:40.
    • (2008) BMC Bioinformatics , vol.9 , pp. 40
    • Zhang, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.