-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0028069540
-
Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen
-
Blum, G., M. Ott, A. Lischewski, A. Ritter, H. Imrich, H. Tschäpe, and J. Hacker. 1994. Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen. Infect. Immun. 62:606-614.
-
(1994)
Infect. Immun.
, vol.62
, pp. 606-614
-
-
Blum, G.1
Ott, M.2
Lischewski, A.3
Ritter, A.4
Imrich, H.5
Tschäpe, H.6
Hacker, J.7
-
3
-
-
0032797519
-
The 102-kilobase pgm locus of Yersinia pestis: Sequence analysis and comparison of selected regions among different Yersinia pestis and Yersinia pseudotuberculosis strains
-
Buchrieser, C., C. Rusniok, L. Frangeul, E. Couve, A. Billault, F. Kunst, E. Carniel, and P. Glaser. 1999. The 102-kilobase pgm locus of Yersinia pestis: sequence analysis and comparison of selected regions among different Yersinia pestis and Yersinia pseudotuberculosis strains. Infect. Immun. 67:4851-4861.
-
(1999)
Infect. Immun.
, vol.67
, pp. 4851-4861
-
-
Buchrieser, C.1
Rusniok, C.2
Frangeul, L.3
Couve, E.4
Billault, A.5
Kunst, F.6
Carniel, E.7
Glaser, P.8
-
4
-
-
0029805602
-
Characterization of a large chromosomal "high-pathogenicity island" in biotype 1B Yersinia enterocolitica
-
Carniel, E., I. Guilvout, and M. Prentice. 1996. Characterization of a large chromosomal "high-pathogenicity island" in biotype 1B Yersinia enterocolitica. J. Bacteriol. 178:6743-6751.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6743-6751
-
-
Carniel, E.1
Guilvout, I.2
Prentice, M.3
-
5
-
-
0030828507
-
Reduced polysialic acid capsule expression in Escherichia coli K1 mutants with chromosomal defects in kpsF
-
Cieslewicz, M., and E. Vimr. 1997. Reduced polysialic acid capsule expression in Escherichia coli K1 mutants with chromosomal defects in kpsF. Mol. Microbiol. 26:237-249.
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 237-249
-
-
Cieslewicz, M.1
Vimr, E.2
-
6
-
-
0033775633
-
Rapid and simple determination of the Escherichia coli phylogenetic group
-
Clermont, O., S. Bonacorsi, and E. Bingen. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66:4555-4558.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4555-4558
-
-
Clermont, O.1
Bonacorsi, S.2
Bingen, E.3
-
7
-
-
0034799370
-
Whole genome plasticity in pathogenic bacteria
-
Dobrindt, U., and J. Hacker. 2001. Whole genome plasticity in pathogenic bacteria. Curr. Opin. Microbiol. 4:550-557.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 550-557
-
-
Dobrindt, U.1
Hacker, J.2
-
9
-
-
0036130271
-
Genome plasticity in pathogenic and nonpathogenic enterobacteria
-
Dobrindt, U., U. Hentschel, J. B. Kaper, and J. Hacker. 2002. Genome plasticity in pathogenic and nonpathogenic enterobacteria. Curr. Top. Microbiol. Immunol. 264:157-175.
-
(2002)
Curr. Top. Microbiol. Immunol.
, vol.264
, pp. 157-175
-
-
Dobrindt, U.1
Hentschel, U.2
Kaper, J.B.3
Hacker, J.4
-
10
-
-
0033932231
-
Relationship between the Tsh autotransporter and pathogenicity of avian Escherichia coli and localization and analysis of the Tsh genetic region
-
Dozols, C. M., M. Dho-Moulin, A. Bree, J. M. Fairbrother, C. Desautels, and R. Curtiss III. 2000. Relationship between the Tsh autotransporter and pathogenicity of avian Escherichia coli and localization and analysis of the Tsh genetic region. Infect. Immun. 68:4145-4154.
-
(2000)
Infect. Immun.
, vol.68
, pp. 4145-4154
-
-
Dozols, C.M.1
Dho-Moulin, M.2
Bree, A.3
Fairbrother, J.M.4
Desautels, C.5
Curtiss R. III6
-
11
-
-
0026774809
-
Loss of the pigmentation phenotype in Yersinia pestis is due to the spontaneous deletions of 102 kb of chromosomal DNA, which is flanked by a repetitive element
-
Fetherston, J. D., P. Schuetze, and R. D. Perry. 1992. Loss of the pigmentation phenotype in Yersinia pestis is due to the spontaneous deletions of 102 kb of chromosomal DNA, which is flanked by a repetitive element. Mol. Microbiol. 6:2693-2704.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 2693-2704
-
-
Fetherston, J.D.1
Schuetze, P.2
Perry, R.D.3
-
12
-
-
0028293026
-
Regulatory circuits involved with pH-regulated gene expression in Salmonella typhimurium
-
Foster, J. W., Y. K. Park, I. S. Bang, K. Karem, H. Betts, H. K. Hall, and E. Shaw. 1994. Regulatory circuits involved with pH-regulated gene expression in Salmonella typhimurium. Microbiology 140:341-352.
-
(1994)
Microbiology
, vol.140
, pp. 341-352
-
-
Foster, J.W.1
Park, Y.K.2
Bang, I.S.3
Karem, K.4
Betts, H.5
Hall, H.K.6
Shaw, E.7
-
13
-
-
0031661883
-
Genomic analysis of a pathogenicity island in uropathogenic Escherichia coli strain CFT073: Distribution of homologous sequences among isolates from patients with pyelonephritis, cystitis, and catheter-associated bacteriuria and from fecal samples
-
Guyer, D. M., J.-S. Kao, and H. L. T. Mobley. 1998. Genomic analysis of a pathogenicity island in uropathogenic Escherichia coli strain CFT073: distribution of homologous sequences among isolates from patients with pyelonephritis, cystitis, and catheter-associated bacteriuria and from fecal samples. Infect. Immun. 66:4411-4417.
-
(1998)
Infect. Immun.
, vol.66
, pp. 4411-4417
-
-
Guyer, D.M.1
Kao, J.-S.2
Mobley, H.L.T.3
-
14
-
-
0001972152
-
The concept of pathogenicity islands
-
J. B. Kaper and J. Hacker (ed.). ASM Press, Washington, D.C.
-
Hacker, J., and J. B. Kaper. 1999. The concept of pathogenicity islands, p. 1-11. In J. B. Kaper and J. Hacker (ed.), Pathogenicity islands and other mobile virulence elements. ASM Press, Washington, D.C.
-
(1999)
Pathogenicity islands and other mobile virulence elements
, pp. 1-11
-
-
Hacker, J.1
Kaper, J.B.2
-
15
-
-
0033758756
-
Pathogenicity islands and the evolution of microbes
-
Hacker, J., and J. B. Kaper. 2000. Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol. 54:641-679.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 641-679
-
-
Hacker, J.1
Kaper, J.B.2
-
16
-
-
0002955537
-
Pathogenicity islands of extraintestinal Escherichia coli
-
J. B. Kaper and J. Hacker (ed.). ASM Press, Washington, D.C.
-
Hacker, J., G. Blum-Oehler, B. Janke, G. Nagy, and W. Goebel. 1999. Pathogenicity islands of extraintestinal Escherichia coli, p. 59-76. In J. B. Kaper and J. Hacker (ed.), Pathogenicity islands, plasmids, and other mobile elements. ASM Press, Washington, D.C.
-
(1999)
Pathogenicity islands, plasmids, and other mobile elements
, pp. 59-76
-
-
Hacker, J.1
Blum-Oehler, G.2
Janke, B.3
Nagy, G.4
Goebel, W.5
-
17
-
-
0020534990
-
Spontaneous deletions and flanking regions of the chromosomally inherited hemolysin determinant of an Escherichia coli O6 strain
-
Hacker, J., S. Knapp, and W. Goebel. 1983. Spontaneous deletions and flanking regions of the chromosomally inherited hemolysin determinant of an Escherichia coli O6 strain. J. Bacteriol. 154:1145-1152.
-
(1983)
J. Bacteriol.
, vol.154
, pp. 1145-1152
-
-
Hacker, J.1
Knapp, S.2
Goebel, W.3
-
18
-
-
0031647080
-
Regulation of uropathogenic Escherichia coli adhesin expression by DNA methylation
-
Hale, W. B., M. W. van der Woude, B. A. Braaten, and D. A. Low. 1998. Regulation of uropathogenic Escherichia coli adhesin expression by DNA methylation. Mol. Genet. Metab. 65:191-196.
-
(1998)
Mol. Genet. Metab.
, vol.65
, pp. 191-196
-
-
Hale, W.B.1
Van der Woude, M.W.2
Braaten, B.A.3
Low, D.A.4
-
19
-
-
0033532378
-
An essential role for DNA adenine methylation in bacterial virulence
-
Heithoff, D. M., R. L. Sinsheimer, D. A. Low, and M. J. Mahan. 1999. An essential role for DNA adenine methylation in bacterial virulence. Science 284:967-970.
-
(1999)
Science
, vol.284
, pp. 967-970
-
-
Heithoff, D.M.1
Sinsheimer, R.L.2
Low, D.A.3
Mahan, M.J.4
-
20
-
-
0033963533
-
Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise
-
Johnson, J. R., and A. L. Stell. 2000. Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J. Infect. Dis. 181:261-272.
-
(2000)
J. Infect. Dis.
, vol.181
, pp. 261-272
-
-
Johnson, J.R.1
Stell, A.L.2
-
21
-
-
0034860655
-
Ongoing horizontal and vertical transmission of virulence genes and papa alleles among Escherichia coli blood isolates from patients with diverse-source bacteremia
-
Johnson, J. R., T. T. O'Bryan, M. Kuskowski, and J. N. Maslow. 2001. Ongoing horizontal and vertical transmission of virulence genes and papa alleles among Escherichia coli blood isolates from patients with diverse-source bacteremia. Infect. Immun. 69:5363-5374.
-
(2001)
Infect. Immun.
, vol.69
, pp. 5363-5374
-
-
Johnson, J.R.1
O'Bryan, T.T.2
Kuskowski, M.3
Maslow, J.N.4
-
22
-
-
0032729647
-
A genomic island, termed high-pathogenicity island, is present in certain non-O157 Shiga toxin-producing Escherichia coli clonal lineages
-
Karch, H., S. Schubert, D. Zhang, W. Zhang, H. Schmidt, T. Olschliger, and J. Hacker. 1999. A genomic island, termed high-pathogenicity island, is present in certain non-O157 Shiga toxin-producing Escherichia coli clonal lineages. Infect. Immun. 67:5994-6001.
-
(1999)
Infect. Immun.
, vol.67
, pp. 5994-6001
-
-
Karch, H.1
Schubert, S.2
Zhang, D.3
Zhang, W.4
Schmidt, H.5
Olschliger, T.6
Hacker, J.7
-
23
-
-
0035143588
-
Phe of human and bovine pathogenic Escherichia coli isolates
-
Phe of human and bovine pathogenic Escherichia coli isolates. Infect. Immun. 69:937-948.
-
(2001)
Infect. Immun.
, vol.69
, pp. 937-948
-
-
Lalioui, L.1
Le Bouguénec, C.2
-
25
-
-
0032584169
-
Black holes and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli
-
Maurelli, A. T., R. E. Fernandez, C. A. Bloch, C. K. Rode, and A. Fasano. 1998. Black holes and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc. Natl. Acad. Sci. USA 95:3943-3949.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3943-3949
-
-
Maurelli, A.T.1
Fernandez, R.E.2
Bloch, C.A.3
Rode, C.K.4
Fasano, A.5
-
26
-
-
0033188183
-
Inhibition of Shigella flexneri-induced transepithelial migration of polymorphonuclear leucocytes by cadaverine
-
McCormick, B. A., M. I. Fernandez, A. M. Siber, and A. T. Maurelli. 1999. Inhibition of Shigella flexneri-induced transepithelial migration of polymorphonuclear leucocytes by cadaverine. Cell. Microbiol. 1:143-155.
-
(1999)
Cell. Microbiol.
, vol.1
, pp. 143-155
-
-
McCormick, B.A.1
Fernandez, M.I.2
Siber, A.M.3
Maurelli, A.T.4
-
27
-
-
0035180863
-
Characterization of In53, a class 1 plasmid- and composite transposon-located integron of Escherichia coli which carries an unusual array of gene cassettes
-
Naas, T., Y. Mikami, T. Imai, L. Poirel, and P. Nordmann. 2001. Characterization of In53, a class 1 plasmid- and composite transposon-located integron of Escherichia coli which carries an unusual array of gene cassettes. J. Bacteriol. 183:235-249.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 235-249
-
-
Naas, T.1
Mikami, Y.2
Imai, T.3
Poirel, L.4
Nordmann, P.5
-
28
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
29
-
-
0029850017
-
Efficient random subcloning of DNA sheared in a recirculating point-sink flow system
-
Oefner, P., S. P. Hunicke-Smith, L. Chiang, F. Dietrich, J. Mulligan, and R. W. Davis. 1996. Efficient random subcloning of DNA sheared in a recirculating point-sink flow system. Nucleic Acids Res. 24:3879-3886.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3879-3886
-
-
Oefner, P.1
Hunicke-Smith, S.P.2
Chiang, L.3
Dietrich, F.4
Mulligan, J.5
Davis, R.W.6
-
30
-
-
0035887975
-
-
Rasko, D. A., J. A. Phillips, X. Li, and H. L. T. Mobley. 2001. Identification of DNA sequences from a second pathogenicity island of uropathogenic Escherichia coli CFT073: probes specific for uropathogenic populations. 184:1041-1049.
-
(2001)
Identification of DNA sequences from a second pathogenicity island of uropathogenic Escherichia coli CFT073: Probes specific for uropathogenic populations
, vol.184
, pp. 1041-1049
-
-
Rasko, D.A.1
Phillips, J.A.2
Li, X.3
Mobley, H.L.T.4
-
31
-
-
0036127130
-
Extraintestinal Escherichia coli as a model system for the study of pathogenicity islands
-
Redford, P., and R. A. Welch. 2002. Extraintestinal Escherichia coli as a model system for the study of pathogenicity islands. Curr. Top. Microbiol. Immunol. 264:15-30.
-
(2002)
Curr. Top. Microbiol. Immunol.
, vol.264
, pp. 15-30
-
-
Redford, P.1
Welch, R.A.2
-
32
-
-
0033635022
-
Artemis: Sequence visualisation and annotation
-
Rutherford, K., J. Parkhill, J. Crook, T. Horsnell, P. Rice, M.-A. Rajandream, and B. Barrell. 2000. Artemis: sequence visualisation and annotation. Bioinformatics 16:944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.-A.6
Barrell, B.7
-
33
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular cloning: a laboratory manual, 2nd ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
34
-
-
0032821564
-
Characterization of the integration site of Yersinia high-pathogenicity island in Escherichia coli
-
Schubert, S., A. Rakin, D. Fischer, J. Sorsa, and J. Heesemann. 1999. Characterization of the integration site of Yersinia high-pathogenicity island in Escherichia coli. FEMS Microbiol. Lett. 179:409-414.
-
(1999)
FEMS Microbiol. Lett.
, vol.179
, pp. 409-414
-
-
Schubert, S.1
Rakin, A.2
Fischer, D.3
Sorsa, J.4
Heesemann, J.5
-
36
-
-
0029739331
-
Two pathogenicity islands in uropathogenic Escherichia coli J96: Cosmid cloning and sample sequencing
-
Swenson, D. L., N. O. Bukanov, D. E. Berg, and R. A. Welch. 1996. Two pathogenicity islands in uropathogenic Escherichia coli J96: cosmid cloning and sample sequencing. Infect. Immun. 64:3736-3743.
-
(1996)
Infect. Immun.
, vol.64
, pp. 3736-3743
-
-
Swenson, D.L.1
Bukanov, N.O.2
Berg, D.E.3
Welch, R.A.4
|