The influence of the fungal pathogen Mycocentrospora acerina on the proteome and polyacetylenes and 6-methoxymellein in organic and conventionally cultivated carrots (Daucus carota) during post harvest storage

Journal of Proteomics

Volumn 75, Issue 3, 2012, Pages 962-977

  Louarn, Sébastien ^a   Nawrocki, Arkadiusz ^b   Edelenbos, Merete ^c   Jensen, Dan F ^a,d   Jensen, Ole N ^b   Collinge, David B ^a   Jensen, Birgit ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^c AARHUS UNIVERSITY   (Denmark)

^d SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

6 Methoxymellein; Carrot proteome; Mycocentrospora acerina; Organic production; Polyacetylenes

Indexed keywords

6 METHOXYMELLEIN; FALCARINDIOL; PANAXYNOL; PHYTOALEXIN; POLYACETYLENE DERIVATIVE; PROTEOME; UNCLASSIFIED DRUG;

ARTICLE; BIOASSAY; CARROT; CONTROLLED STUDY; ENERGY METABOLISM; FUNGUS; HARVEST; INFECTION SENSITIVITY; MYCOCENTROSPORA ACERINA; NONHUMAN; PLANT DISEASE; PLANT ROOT; PRIORITY JOURNAL; STORAGE; STRESS; UPREGULATION;

ASCOMYCOTA; DAUCUS CAROTA; ISOCOUMARINS; ORGANIC AGRICULTURE; PLANT DISEASES; PLANT PROTEINS; PLANT ROOTS; POLYACETYLENES; PROTEOME; TIME FACTORS;

DAUCUS CAROTA; MYCOCENTROSPORA ACERINA;

EID: 84355161450     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.10.014     Document Type: Article

References (56)

1. Kastelein P., Stilma E.S.C., Elderson J., Kohl J. Occurrence of Rhexocercosporidium carotae on cold stored carrot roots in The Netherlands. Eur J Plant Pathol 2007, 117:293-305.
2. Vikram A., Lui L.H., Hossain A., Kushalappa A.C. Metabolic fingerprinting to discriminate diseases of stored carrots. Ann Appl Biol 2006, 148:17-26.
3. Lecam B., Massiot P., Rouxel F. Cell-wall polysaccharide-degrading enzymes produced by isolates of Mycocentrospora-acerina differing in aggressiveness on carrot. Physiol Mol Plant Pathol 1994, 44:187-198.
4. Ghorbani R., Wilcockson S., Koocheki A., Leifert C. Soil management for sustainable crop disease control: a review. Environ Chem Lett 2008, 6:149-162.
5. Kreutzmann S., Christensen L.P., Edelenbos M. Investigation of bitterness in carrots (Daucus carota L.) based on quantitative chemical and sensory analyses. Lwt-Food Sci Technol 2008, 41:193-205.
6. Schmiech L., Uemura D., Hofmann T. Reinvestigation of the bitter compounds in carrots (Daucus carota L.) by using a molecular sensory science approach. J Agric Food Chem 2008, 56:10252-10260.
7. Superchi S., Pini D., Salvadori P., Marinelli F., Rainaldi G., Zanelli U., Nutironchi V. Synthesis and toxicity to mammalian-cells of the carrot dihydroisocoumarins. Chem Res Toxicol 1993, 6:46-49.
8. Kobaek-Larsen M., Christensen L.P., Vach W., Ritskes-Hoitinga J., Brandt K. Inhibitory effects of feeding with carrots or (-)-falcarinol on development of azoxymethane-induced preneoplastic lesions in the rat colon. J Agric Food Chem 2005, 53:1823-1827.
9. Garrod B., Lewis B.G. Effect of falcarindiol on hyphal growth of Mycocentrospora-acerina. Trans Brit Mycol Soc 1982, 78:533-536.
10. Jayaraj J., Rahman M., Wan A., Punja Z.K. Enhanced resistance to foliar fungal pathogens in carrot by application of elicitors. Ann Appl Biol 2009, 155:71-80.
11. Mercier J., Arul J., Julien C. Effect of food preparation on the isocoumarin, 6-methoxymellein, content of UV-treated carrots. Food Res Int 1994, 27:401-404.
12. Gygi S.P., Han D.K.M., Gingras A.C., Sonenberg N., Aebersold R. Protein analysis by mass spectrometry and sequence database searching: tools for cancer research in the post-genomic era. Electrophoresis 1999, 20:310-319.
13. Jensen O.N. Interpreting the protein language using proteomics. Nat Rev Mol Cell Biol 2006, 7:391-403.
14. Mehta A., Magalhaes B.S., Souza D.S.L., Vasconcelos E.A.R., Silva L.P., Grossi-De-Sa M.F., Franco O.L., da Costa P.H.A., Rocha T.L. Rooteomics: the challenge of discovering plant defense-related proteins in roots. Curr Protein Pept Sci 2008, 9:108-116.
15. Colditz F., Nyamsuren O., Niehaus K., Eubel H., Braun H.P., Krajinski F. Proteomic approach: identification of Medicago truncatula proteins induced in roots after infection with the pathogenic oomycete Aphanomyces euteiches. Plant Mol Biol 2004, 55:109-120.
16. Mehta A., Brasileiro A.C.M., Souza D.S.L., Romano E., Campos M.A., Grossi-De-Sa M.F., Silva M.S., Franco O.L., Fragoso R.R., Bevitori R., Rocha T.L. Plant-pathogen interactions: what is proteomics telling us?. FEBS J 2008, 275:3731-3746.
17. Dumas-Gaudot E., Valot B., Bestel-Corre G., Recorbet G., St-Arnaud M., Fontaine B., Dieu M., Raes M., Saravanan R.S., Gianinazzi S. Proteomics as a way to identify extra-radicular fungal proteins from Glomus intraradices - rit-DNA carrot root mycorrhizas. FEMS Microbiol Ecol 2004, 48:401-411.
18. Mooney B.P., Miernyk J.A., Greenlief C.M., Thelen J.J. Using quantitative proteomics of arabidopsis roots and leaves to predict metabolic activity. Physiol Plant 2006, 128:237-250.
19. Woteki C.E., Facinoli S.L., Schor D. Keep food safe to eat: healthful food must be safe as well as nutritious. J Nutr 2001, 131:502S-509S.
20. Magnusson M.K., Arvola A., Hursti U.K.K. +berg L, Sj÷dθn PO. Choice of organic foods is related to perceived consequences for human health and to environmentally friendly behaviour. Appetite 2003, 40:109-117.
21. IFOAM. IFOAM basic standards for organic production and processing version 2005. IFOAM, 2006.
22. Magkos F., Arvaniti F., Zampelas A. Organic food: buying more safety or just peace of mind? A critical review of the literature. Crit Rev Food Sci Nutr 2006, 46:23-56.
23. Stamp N. Theory of plant defensive level: example of process and pitfalls in development of ecological theory. Oikos 2003, 102:672-678.
24. Axelsen J.A., Kristensen K.T. Collembola and mites in plots fertilised with different types of green manure. Pedobiologia 2000, 44:556-566.
25. Klingen I., Eilenberg J., Meadow R. Effects of farming system, field margins and bait insect on the occurrence of insect pathogenic fungi in soils. Agric Ecosyst Environ 2002, 91:191-198.
26. Hansen B. Determination of nitrogen as elementary-N, an alternative to Kjeldahl. Acta Agric Scand 1989, 39:113-118.
27. Nawrocki A., Fey S.J., Goffeau A., Roepstorff P., Larsen P.M. The effects of transcription regulating genes pdr1, pdr1-3 and pdr3 in pleiotropic drug resistance. Proteomics 2001, 1:1022-1032.
28. Nawrocki A, Thorup-Kristensen K, Jensen ON. Quantitative proteomics by 2DE and MALDI MS/MS uncover the effects of organic and conventional cropping methods on vegetable products. J Proteomics 2011;74:2810-25, doi:10.1016/j.jprot.2011.06.021.
29. Hjerno K., Alm R., Canback B., Matthiesen R., Trajkovski K., Bjork L., Roepstorff P., Emanuelsson CCEls Down-regulation of the strawberry bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant. Proteomics 2006, 6:1574-1587.
30. Jensen O.N., Larsen M.R., Roepstorff P. Mass spectrometric identification and microcharacterization of proteins from electrophoretic gels: strategies and applications. Prot-Struct Funct Genet 1998, 74-89.
31. Marekov L.N., Steinert P.M. Charge derivatization by 4-sulfophenyl isothiocyanate enhances peptide sequencing by post-source decay matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Mass Spectrom 2003, 38:373-377.
32. Shevchenko A., Sunyaev S., Loboda A., Shevehenko A., Bork P., Ens W., Standing K.G. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching. Anal Chem 2001, 73:1917-1926.
33. Hermansen A., Amundsen T., Taksdal G., Dragland S., Synnevag G., Flones M., Sundheim L. Variations in infection by Mycocentrospora acerina in carrot monoculture plots at four sites during 1985-1995. Acta Agric Scand B-Soil Plant Sci 1999, 49:248-257.
34. Soltoft M., Eriksen M.R., Trager A.W.B., Nielsen J., Laursen K.H., Husted S., Halekoh U., Knuthsen P. Comparison of polyacetylene content in organically and conventionally grown carrots using a fast ultrasonic liquid extraction method. J Agric Food Chem 2010, 58:7673-7679.
35. Bourn D., Prescott J. A comparison of the nutritional value, sensory qualities, and food safety of organically and conventionally produced foods. Crit Rev Food Sci Nutr 2002, 42:1-34.
36. Bufe A., Spangfort M.D., Kahlert H., Schlaak M., Becker W.M. The major birch pollen allergen, bet v 1, shows ribonuclease activity. Planta 1996, 199:413-415.
37. van Loon L.C., Rep M., Pieterse C.M.J. Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol 2006, 44:135-162.
38. Colditz F., Niehaus K., Krajinski F. Silencing of PR-10-like proteins in Medicago truncatula results in an antagonistic induction of other PR proteins and in an increased tolerance upon infection with the oomycete Aphanomyces euteiches. Planta 2007, 226:57-71.
39. Kim S.T., Kim S.G., Hwang D.H., Kang S.Y., Kim H.J., Lee B.H., Lee J.J., Kang K.Y. Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics 2004, 4:3569-3578.
40. Ray S., Anderson J.M., Urmeev F.I., Goodwin S.B. Rapid induction of a protein disulfide isomerase and defense-related genes in wheat in response to the hemibiotrophic fungal pathogen Mycosphaerella graminicola. Plant Mol Biol 2003, 53:741-754.
41. Kasai T., Suzuki T., Ono K., Ogawa K., Inagaki Y., Ichinose Y., Toyoda K., Shiraishi Tto Pea extracellular Cu/Zn-superoxide dismutase responsive to signal molecules from a fungal pathogen. J Gen Plant Pathol 2006, 72:265-272.
42. Baek D., Jin Y., Jeong J.C., Lee H.J., Moon H., Lee J., Shin D., Kang C.H., Kim D.H., Nam J., Lee S.Y., Yun D.J. Suppression of reactive oxygen species by glyceraldehyde-3-phosphate dehydrogenase. Phytochemistry 2008, 69:333-338.
43. Shetty N.P., Jorgensen H.J.L., Jensen J.D., Collinge D.B., Shetty H.S. Roles of reactive oxygen species in interactions between plants and pathogens. Eur J Plant Pathol 2008, 121:267-280.
44. Yang F., Jensen J.D., Spliid N.H., Svensson B., Jacobsen S., Jorgensen L.N., Jorgensen H.J.L., Collinge D.B., Finnie C. Investigation of the effect of nitrogen on severity of Fusarium Head Blight in barley. J Proteomics 2010, 73:743-752.
45. Sturm A. A wound-inducible glycine-rich protein from Daucus-carota with homology to single-stranded nucleic acid-binding proteins. Plant Physiol 1992, 99:1689-1692.
46. Perata P., Alpi A. Ethanol-induced injuries to carrot cells - the role of acetaldehyde. Plant Physiol 1991, 95:748-752.
47. Nelson D.E., Rammesmayer G., Bohnert H.J. Coordination of INPS1 and IMT1 expression in roots and leaves of Mesembryanthemum crystallinum. Plant Physiol 1997, 114:525.
48. Konishi H., Yamane H., Maeshima M., Komatsu S. Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling. Plant Mol Biol 2004, 56:839-848.
49. Pavangadkar K., Thomashow M.F., Triezenberg S.J. Histone dynamics and roles of histone acetyltransferases during cold-induced gene regulation in arabidopsis. Plant Mol Biol 2010, 74:183-200.
50. Jiang H.W., Dian W.M., Liu F.Y., Wu P. Isolation and characterization of two fructokinase cDNA clones from rice. Phytochemistry 2003, 62:47-52.
51. Hourton-Cabassa C., mbard-Bretteville F., Moreau F., de Virville J.D., Remy R., des Francs-Small C.C. Stress induction of mitochondrial formate dehydrogenase in potato leaves. Plant Physiol 1998, 116:627-635.
52. Abdrakhamanova A., Wang Q.Y., Khokhlova L., Nick P. Is microtubule disassembly a trigger for cold acclimation?. Plant Cell Physiol 2003, 44:676-686.
53. Latijnhouwers M., Gillespie T., Boevink P., Kriechbaumer V., Hawes C., Carvalho C.M. Localization and domain characterization of Arabidopsis Golgin candidates. J Exp Bot 2007, 58:4373-4386.
54. Asakura Y., Seki H., Muranaka T., Yamamura Y., Kurosaki F. Enhanced secretory activity of Atropa belladonna hairy root culture over-expressing ADP-ribosylation factor gene. Biol Pharm Bull 2008, 31:1465-1468.
55. Suzuki Y., Nakabayashi K., Yoshizawa R., Mae T., Makino A. Differences in expression of the RBCS multigene family and rubisco protein content in various rice plant tissues at different growth stages. Plant Cell Physiol 2009, 50:1851-1855.
56. Schwender J., Goffman F., Ohlrogge J.B., Shachar-Hill Y. Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 2004, 432:779-782.