메뉴 건너뛰기




Volumn 53, Issue 12, 2011, Pages 961-970

RNA editing sites exist in protein-coding genes in the chloroplast genome of Cycas taitungensis

Author keywords

Chloroplasts; Cycas taitungensis; Ndh genes; Post transcriptional modification; RNA editing; Transcripts

Indexed keywords

AMINO ACID; MITOCHONDRIAL PROTEIN;

EID: 83755206004     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2011.01082.x     Document Type: Article
Times cited : (55)

References (38)
  • 1
    • 0028024292 scopus 로고
    • Introduction of a heterologous editing site into the tobacco plastid genome: The lack of RNA editing leads to a mutant phenotype
    • Bock R, Kossel H, Maliga P (1994) Introduction of a heterologous editing site into the tobacco plastid genome: The lack of RNA editing leads to a mutant phenotype. EMBO J. 13, 4623-4628.
    • (1994) EMBO J. , vol.13 , pp. 4623-4628
    • Bock, R.1    Kossel, H.2    Maliga, P.3
  • 3
    • 0018110116 scopus 로고
    • Prediction of the secondary structure of proteins from their amino acid sequence
    • Chou PY, Fasman GD (1978) Prediction of the secondary structure of proteins from their amino acid sequence. Adv. Enzymol. Relat. Areas Mol. Biol. 47, 45-148.
    • (1978) Adv. Enzymol. Relat. Areas Mol. Biol. , vol.47 , pp. 45-148
    • Chou, P.Y.1    Fasman, G.D.2
  • 4
    • 0033736511 scopus 로고    scopus 로고
    • Conservation of RNA editing between rice and maize plastids: Are most editing events dispensable?
    • Corneille S, Lutz K, Maliga P (2000) Conservation of RNA editing between rice and maize plastids: Are most editing events dispensable? Mol. Gen. Genet. 264, 419-424.
    • (2000) Mol. Gen. Genet. , vol.264 , pp. 419-424
    • Corneille, S.1    Lutz, K.2    Maliga, P.3
  • 5
    • 0036236172 scopus 로고    scopus 로고
    • C-to-U conversion in the intercistronic ndhI/ndhG RNA of plastids from monocot plants: Conventional editing in an unconventional small reading frame?
    • Drescher A, Hupfer H, Nickel C, Albertazzi F, Hohmann U, Herrmann RG, Maier RM (2002) C-to-U conversion in the intercistronic ndhI/ndhG RNA of plastids from monocot plants: Conventional editing in an unconventional small reading frame? Mol. Genet. Genomics 267, 262-269.
    • (2002) Mol. Genet. Genomics , vol.267 , pp. 262-269
    • Drescher, A.1    Hupfer, H.2    Nickel, C.3    Albertazzi, F.4    Hohmann, U.5    Herrmann, R.G.6    Maier, R.M.7
  • 6
    • 3042803660 scopus 로고    scopus 로고
    • Rapid evolution of RNA editing sites in a small non-essential plastid gene
    • Fiebig A, Stegemann S, Bock R (2004) Rapid evolution of RNA editing sites in a small non-essential plastid gene. Nucleic Acids Res. 32, 3615-3622.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 3615-3622
    • Fiebig, A.1    Stegemann, S.2    Bock, R.3
  • 7
    • 60649111035 scopus 로고    scopus 로고
    • Cucumber, melon, pumpkin, and squash: Are rules of editing in flowering plants chloroplast genes so well known indeed?
    • Guzowska-Nowowiejska M, Fiedorowicz E, Plader W (2009) Cucumber, melon, pumpkin, and squash: Are rules of editing in flowering plants chloroplast genes so well known indeed? Gene 434, 1-8.
    • (2009) Gene , vol.434 , pp. 1-8
    • Guzowska-Nowowiejska, M.1    Fiedorowicz, E.2    Plader, W.3
  • 8
    • 79958748899 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria
    • Hammani K, des Francs-Small CC, Takenaka M, Tanz SK, Okuda K, Shikanai T, Brennicke A, Small I (2011) The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. J. Biol. Chem. 286, 21361-21371.
    • (2011) J. Biol. Chem. , vol.286 , pp. 21361-21371
    • Hammani, K.1    des Francs-Small, C.C.2    Takenaka, M.3    Tanz, S.K.4    Okuda, K.5    Shikanai, T.6    Brennicke, A.7    Small, I.8
  • 10
    • 0032721862 scopus 로고    scopus 로고
    • RNA editing sites in tobacco chloroplast transcripts: Editing as a possible regulator of chloroplast RNA polymerase activity
    • Hirose T, Kusumegi T, Tsudzuki T, Sugiura M (1999) RNA editing sites in tobacco chloroplast transcripts: Editing as a possible regulator of chloroplast RNA polymerase activity. Mol. Gen. Genet. 262, 462-467.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 462-467
    • Hirose, T.1    Kusumegi, T.2    Tsudzuki, T.3    Sugiura, M.4
  • 11
    • 0025910413 scopus 로고
    • Editing of a chloroplast mRNA by creation of an initiation codon
    • Hoch B, Maier RM, Appel K, Igloi GL, Kossel H (1991) Editing of a chloroplast mRNA by creation of an initiation codon. Nature 353, 178-180.
    • (1991) Nature , vol.353 , pp. 178-180
    • Hoch, B.1    Maier, R.M.2    Appel, K.3    Igloi, G.L.4    Kossel, H.5
  • 12
    • 11144332547 scopus 로고    scopus 로고
    • A systematic search for RNA editing sites in pea chloroplasts: An editing event causes diversification from the evolutionarily conserved amino acid sequence
    • Inada M, Sasaki T, Yukawa M, Tsudzuki T, Sugiura M (2004) A systematic search for RNA editing sites in pea chloroplasts: An editing event causes diversification from the evolutionarily conserved amino acid sequence. Plant Cell Physiol. 45, 1615-1622.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 1615-1622
    • Inada, M.1    Sasaki, T.2    Yukawa, M.3    Tsudzuki, T.4    Sugiura, M.5
  • 13
    • 56449121204 scopus 로고    scopus 로고
    • Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?
    • Jobson RW, Qiu YL (2008) Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift? Biol. Direct 3, 43.
    • (2008) Biol. Direct , vol.3 , pp. 43
    • Jobson, R.W.1    Qiu, Y.L.2
  • 14
    • 33746450368 scopus 로고    scopus 로고
    • Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes
    • Kahlau S, Aspinall S, Gray JC, Bock R (2006) Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes. J. Mol. Evol. 63, 194-207.
    • (2006) J. Mol. Evol. , vol.63 , pp. 194-207
    • Kahlau, S.1    Aspinall, S.2    Gray, J.C.3    Bock, R.4
  • 15
    • 0037085480 scopus 로고    scopus 로고
    • The amino acid sequence of a plastid protein is developmentally regulated by RNA editing
    • Karcher D, Bock R (2002) The amino acid sequence of a plastid protein is developmentally regulated by RNA editing. J. Biol. Chem. 277, 5570-5574.
    • (2002) J. Biol. Chem. , vol.277 , pp. 5570-5574
    • Karcher, D.1    Bock, R.2
  • 16
    • 0026554792 scopus 로고
    • RNA editing in tobacco chloroplasts leads to the formation of a translatable psbL mRNA by a C to U substitution within the initiation codon
    • Kudla J, Igloi GL, Metzlaff M, Hagemann R, Kossel H (1992) RNA editing in tobacco chloroplasts leads to the formation of a translatable psbL mRNA by a C to U substitution within the initiation codon. EMBO J. 11, 1099-1103.
    • (1992) EMBO J. , vol.11 , pp. 1099-1103
    • Kudla, J.1    Igloi, G.L.2    Metzlaff, M.3    Hagemann, R.4    Kossel, H.5
  • 18
    • 0035158294 scopus 로고    scopus 로고
    • Lack of conservation of editing sites in mRNAs that encode subunits of the NAD(P)H dehydrogenase complex in plastids and mitochondria of Arabidopsis thaliana
    • Lutz KA, Maliga P (2001) Lack of conservation of editing sites in mRNAs that encode subunits of the NAD(P)H dehydrogenase complex in plastids and mitochondria of Arabidopsis thaliana. Curr. Genet. 40, 214-219.
    • (2001) Curr. Genet. , vol.40 , pp. 214-219
    • Lutz, K.A.1    Maliga, P.2
  • 19
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • Maier RM, Neckermann K, Igloi GL, Kossel H (1995) Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J. Mol. Biol. 251, 614-628.
    • (1995) J. Mol. Biol. , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kossel, H.4
  • 20
    • 0029863292 scopus 로고    scopus 로고
    • RNA editing in bryophytes and a molecular phylogeny of land plants
    • Malek O, Lätig K, Hiesel R, Brennicke A, Knoop V (1996) RNA editing in bryophytes and a molecular phylogeny of land plants. EMBO J. 15, 1403-1411.
    • (1996) EMBO J. , vol.15 , pp. 1403-1411
    • Malek, O.1    Lätig, K.2    Hiesel, R.3    Brennicke, A.4    Knoop, V.5
  • 21
    • 77954143469 scopus 로고    scopus 로고
    • Plastid ndh genes in plant evolution
    • Martin M, Sabater B (2010) Plastid ndh genes in plant evolution. Plant Physiol. Biochem. 48, 636-645.
    • (2010) Plant Physiol. Biochem. , vol.48 , pp. 636-645
    • Martin, M.1    Sabater, B.2
  • 22
    • 35748939098 scopus 로고    scopus 로고
    • Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites
    • Mulligan RM, Chang KL, Chou CC (2007) Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites. Mol. Biol. Evol. 24, 1971-1981.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1971-1981
    • Mulligan, R.M.1    Chang, K.L.2    Chou, C.C.3
  • 23
    • 0025249858 scopus 로고
    • Contrasting modes and tempos of genome evolution in land plant organelles
    • Palmer JD (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet. 6, 115-120.
    • (1990) Trends Genet. , vol.6 , pp. 115-120
    • Palmer, J.D.1
  • 24
    • 77957692936 scopus 로고    scopus 로고
    • Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes
    • Salmans ML, Chaw SM, Lin CP, Shih AC, Wu YW, Mulligan RM (2010) Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes. Curr. Genet. 56, 439-446.
    • (2010) Curr. Genet. , vol.56 , pp. 439-446
    • Salmans, M.L.1    Chaw, S.M.2    Lin, C.P.3    Shih, A.C.4    Wu, Y.W.5    Mulligan, R.M.6
  • 25
    • 0038082064 scopus 로고    scopus 로고
    • Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): Comparative analysis shows the involvement of distinct trans-factors for ndhB editing
    • Sasaki T, Yukawa Y, Miyamoto T, Obokata J, Sugiura M (2003) Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): Comparative analysis shows the involvement of distinct trans-factors for ndhB editing. Mol. Biol. Evol. 20, 1028-1035.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1028-1035
    • Sasaki, T.1    Yukawa, Y.2    Miyamoto, T.3    Obokata, J.4    Sugiura, M.5
  • 26
    • 0035830929 scopus 로고    scopus 로고
    • Chloroplast RNA editing required for functional acetyl-CoA carboxylase in plants
    • Sasaki Y, Kozaki A, Ohmori A, Iguchi H, Nagano Y (2001) Chloroplast RNA editing required for functional acetyl-CoA carboxylase in plants. J. Biol. Chem. 276, 3937-3940.
    • (2001) J. Biol. Chem. , vol.276 , pp. 3937-3940
    • Sasaki, Y.1    Kozaki, A.2    Ohmori, A.3    Iguchi, H.4    Nagano, Y.5
  • 27
    • 33645074681 scopus 로고    scopus 로고
    • RNA editing in plant organelles: Machinery, physiological function and evolution
    • Shikanai T (2006) RNA editing in plant organelles: Machinery, physiological function and evolution. Cell Mol. Life Sci. 63, 698-708.
    • (2006) Cell Mol. Life Sci. , vol.63 , pp. 698-708
    • Shikanai, T.1
  • 30
    • 0034821617 scopus 로고    scopus 로고
    • Comparative analysis of RNA editing sites in higher plant chloroplasts
    • Tsudzuki T, Wakasugi T, Sugiura M (2001) Comparative analysis of RNA editing sites in higher plant chloroplasts. J. Mol. Evol. 53, 327-332.
    • (2001) J. Mol. Evol. , vol.53 , pp. 327-332
    • Tsudzuki, T.1    Wakasugi, T.2    Sugiura, M.3
  • 31
    • 0029781740 scopus 로고    scopus 로고
    • Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: The pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms
    • Wakasugi T, Hirose T, Horihata M, Tsudzuki T, Kossel H, Sugiura M (1996) Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: The pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms. Proc. Natl. Acad. Sci. USA 93, 8766-8770.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8766-8770
    • Wakasugi, T.1    Hirose, T.2    Horihata, M.3    Tsudzuki, T.4    Kossel, H.5    Sugiura, M.6
  • 32
    • 0028043489 scopus 로고
    • Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii
    • Wakasugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M (1994) Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proc. Natl. Acad. Sci. USA 91, 9794-9798.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 9794-9798
    • Wakasugi, T.1    Tsudzuki, J.2    Ito, S.3    Nakashima, K.4    Tsudzuki, T.5    Sugiura, M.6
  • 33
    • 0031717288 scopus 로고    scopus 로고
    • Editing and translation of ribosomal protein S13 transcripts: Unedited translation products are not detectable in maize mitochondria
    • Williams MA, Tallakson WA, Phreaner CG, Mulligan RM (1998) Editing and translation of ribosomal protein S13 transcripts: Unedited translation products are not detectable in maize mitochondria. Curr. Genet. 34, 221-226.
    • (1998) Curr. Genet. , vol.34 , pp. 221-226
    • Williams, M.A.1    Tallakson, W.A.2    Phreaner, C.G.3    Mulligan, R.M.4
  • 34
    • 4444363004 scopus 로고    scopus 로고
    • High levels of RNA editing in a vascular plant chloroplast genome: Analysis of transcripts from the fern Adiantum capillus-veneris
    • Wolf PG, Rowe CA, Hasebe M (2004) High levels of RNA editing in a vascular plant chloroplast genome: Analysis of transcripts from the fern Adiantum capillus-veneris. Gene 339, 89-97.
    • (2004) Gene , vol.339 , pp. 89-97
    • Wolf, P.G.1    Rowe, C.A.2    Hasebe, M.3
  • 35
    • 34548108492 scopus 로고    scopus 로고
    • Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
    • Wu CS, Wang YN, Liu SM, Chaw SM (2007) Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants. Mol. Biol. Evol. 24, 1366-1379.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1366-1379
    • Wu, C.S.1    Wang, Y.N.2    Liu, S.M.3    Chaw, S.M.4
  • 36
    • 48849111306 scopus 로고    scopus 로고
    • Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles
    • Yura K, Go M (2008) Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles. BMC Plant Biol. 8, 79.
    • (2008) BMC Plant Biol. , vol.8 , pp. 79
    • Yura, K.1    Go, M.2
  • 37
    • 1342306403 scopus 로고    scopus 로고
    • Surprising features of plastid ndhD transcripts: Addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon
    • Zandueta-Criado A, Bock R (2004) Surprising features of plastid ndhD transcripts: Addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon. Nucleic Acids Res. 32, 542-550.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 542-550
    • Zandueta-Criado, A.1    Bock, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.