메뉴 건너뛰기




Volumn 20, Issue 7, 2003, Pages 1028-1035

Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): Comparative analysis shows the involvement of distinct trans-factors for ndhB editing

Author keywords

Chloroplast; RNA editing; Tobacco; Trans factor; Transcript

Indexed keywords

RNA;

EID: 0038082064     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg098     Document Type: Article
Times cited : (83)

References (43)
  • 1
    • 0027249358 scopus 로고
    • Tissue-and stage-specific modulation of RNA editing of the psbF and psbL transcript from spinach plastids - A new regulatory mechanism?
    • Bock, R., R. Hagemann, H. Kössel, and J. Kudla. 1993. Tissue-and stage-specific modulation of RNA editing of the psbF and psbL transcript from spinach plastids - a new regulatory mechanism? Mol. Gen. Genet. 240:238-244.
    • (1993) Mol. Gen. Genet. , vol.240 , pp. 238-244
    • Bock, R.1    Hagemann, R.2    Kössel, H.3    Kudla, J.4
  • 2
    • 0030770731 scopus 로고    scopus 로고
    • Identification of critical nucleotide positions for plastid RNA editing site recognition
    • Bock, R., M. Hermann, and M. Fuchs. 1997. Identification of critical nucleotide positions for plastid RNA editing site recognition. RNA 3:1194-1200.
    • (1997) RNA , vol.3 , pp. 1194-1200
    • Bock, R.1    Hermann, M.2    Fuchs, M.3
  • 3
    • 0029813034 scopus 로고    scopus 로고
    • In vivo dissection of cis-acting determinants for plastid RNA editing
    • Bock, R., M. Hermann, and H. Kössel. 1996. In vivo dissection of cis-acting determinants for plastid RNA editing. EMBO J. 15:5052-5059.
    • (1996) EMBO J , vol.15 , pp. 5052-5059
    • Bock, R.1    Hermann, M.2    Kössel, H.3
  • 4
    • 0030946854 scopus 로고    scopus 로고
    • Extraplastidic site-specific factors mediate RNA editing in chloroplasts
    • Bock, R., and H. U. Koop. 1997. Extraplastidic site-specific factors mediate RNA editing in chloroplasts. EMBO J. 16:3282-3288.
    • (1997) EMBO J , vol.16 , pp. 3282-3288
    • Bock, R.1    Koop, H.U.2
  • 5
    • 0029076538 scopus 로고
    • Site-specific factor involved in the editing of the psbL mRNA in tobacco plastids
    • Chaudhuri, S., H. Carrer, and P. Maliga. 1995. Site-specific factor involved in the editing of the psbL mRNA in tobacco plastids. EMBO J. 14:2951-2957.
    • (1995) EMBO J , vol.14 , pp. 2951-2957
    • Chaudhuri, S.1    Carrer, H.2    Maliga, P.3
  • 6
    • 0029989864 scopus 로고    scopus 로고
    • Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site
    • Chaudhuri, S., and P. Maliga. 1996. Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site. EMBO J. 15:5958-5964.
    • (1996) EMBO J , vol.15 , pp. 5958-5964
    • Chaudhuri, S.1    Maliga, P.2
  • 7
    • 0033736511 scopus 로고    scopus 로고
    • Conservation of RNA editing between rice and maize plastids: Are most editing events dispensable?
    • Corneille, S., K. Lutz, and P. Maliga. 2000. Conservation of RNA editing between rice and maize plastids: Are most editing events dispensable? Mol. Gen. Genet. 264:419-424.
    • (2000) Mol. Gen. Genet. , vol.264 , pp. 419-424
    • Corneille, S.1    Lutz, K.2    Maliga, P.3
  • 8
    • 0037184001 scopus 로고    scopus 로고
    • Posttranscriptional control of chloroplast gene expression
    • Del Campo, E., M. B. Sabater, and M. Martin. 2002. Posttranscriptional control of chloroplast gene expression. J. Biol. Chem. 27:36457-36464.
    • (2002) J. Biol. Chem. , vol.27 , pp. 36457-36464
    • Del Campo, E.1    Sabater, M.B.2    Martin, M.3
  • 9
    • 0030998440 scopus 로고    scopus 로고
    • Occurrence of plastid RNA editing in all major lineages of land plants
    • Freyer, R., M.-C. Kiefer-Meyer, and H. Kössel. 1997. Occurrence of plastid RNA editing in all major lineages of land plants. Proc. Natl. Acad. Sci. USA 94:6285-6290.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6285-6290
    • Freyer, R.1    Kiefer-Meyer, M.-C.2    Kössel, H.3
  • 10
    • 0023476443 scopus 로고
    • The gene for the 9 kd polypeptide, a possible apoprotein for the iron-sulfur centers A and B of the phytosystem I complex, in the tobacco chloroplast DNA
    • Hayashida, N., T. Matsubayashi, K. Shinozaki, M. Sugiura, K. Inoue, and T. Hiyama. 1987. The gene for the 9 kd polypeptide, a possible apoprotein for the iron-sulfur centers A and B of the phytosystem I complex, in the tobacco chloroplast DNA. Curr. Genet. 12:247-250.
    • (1987) Curr. Genet. , vol.12 , pp. 247-250
    • Hayashida, N.1    Matsubayashi, T.2    Shinozaki, K.3    Sugiura, M.4    Inoue, K.5    Hiyama, T.6
  • 11
    • 0033609120 scopus 로고    scopus 로고
    • Transfer of plastid RNA-editing activity to novel sites suggests a critical role for spacing in editing-site recognition
    • Hermann, M., and R. Bock. 1999. Transfer of plastid RNA-editing activity to novel sites suggests a critical role for spacing in editing-site recognition. Proc. Natl. Acad. Sci. USA 96:4856-4861.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 4856-4861
    • Hermann, M.1    Bock, R.2
  • 12
    • 0030088110 scopus 로고    scopus 로고
    • Occurrence of silent RNA editing in chloroplasts: Its species specificity and the influence of environmental and developmental conditions
    • Hirose, T., H. Fan, J. Y. Suzuki, T. Wakasugi, T. Tsudzuki, H. Kössel, and M. Sugiura. 1996. Occurrence of silent RNA editing in chloroplasts: its species specificity and the influence of environmental and developmental conditions. Plant Mol. Biol. 30:667-672.
    • (1996) Plant Mol. Biol. , vol.30 , pp. 667-672
    • Hirose, T.1    Fan, H.2    Suzuki, J.Y.3    Wakasugi, T.4    Tsudzuki, T.5    Kössel, H.6    Sugiura, M.7
  • 13
    • 0032721862 scopus 로고    scopus 로고
    • RNA editing sites in tobacco chloroplast transcripts: Editing as a possible regulator of chloroplast RNA polymerase activity
    • Hirose, T., T. Kusumegi, T. Tsudzuki, and M. Sugiura. 1999. RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity. Mol. Gen. Genet. 262:462-467.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 462-467
    • Hirose, T.1    Kusumegi, T.2    Tsudzuki, T.3    Sugiura, M.4
  • 14
    • 0030729775 scopus 로고    scopus 로고
    • Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA: A possible regulatory mechanism for the expression of a chloroplast operon consisting of functionally unrelated genes
    • Hirose, T., and M. Sugiura. 1997. Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA: a possible regulatory mechanism for the expression of a chloroplast operon consisting of functionally unrelated genes. EMBO J. 16:6804-6811.
    • (1997) EMBO J. , vol.16 , pp. 6804-6811
    • Hirose, T.1    Sugiura, M.2
  • 15
    • 0035282916 scopus 로고    scopus 로고
    • Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system
    • -. 2001. Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system. EMBO J. 20:1144-1152.
    • (2001) EMBO J. , vol.20 , pp. 1144-1152
  • 16
    • 0025910413 scopus 로고
    • Editing of a chloroplast mRNA by creation of an initiation codon
    • Hoch, B., R. M. Maier, K. Appel, G. L. Igloi, and H. Kössel. 1991. Editing of a chloroplast mRNA by creation of an initiation codon. Nature 353:178-180.
    • (1991) Nature , vol.353 , pp. 178-180
    • Hoch, B.1    Maier, R.M.2    Appel, K.3    Igloi, G.L.4    Kössel, H.5
  • 17
    • 0036944310 scopus 로고    scopus 로고
    • Temperature sensitivity of RNA editing and intron splicing reactions in the plastid ndhB transcript
    • Karcher, D., and R. Bock. 2002. Temperature sensitivity of RNA editing and intron splicing reactions in the plastid ndhB transcript. Curr. Genet. 41:48-52.
    • (2002) Curr. Genet. , vol.41 , pp. 48-52
    • Karcher, D.1    Bock, R.2
  • 18
    • 0027198355 scopus 로고
    • Characterization of the Nicotiana tabacum L. genome by molecular cytogenetics
    • Kenton, A., A. S. Parokonny, Y. Y. Gleba, and M. D. Bennett. 1993. Characterization of the Nicotiana tabacum L. genome by molecular cytogenetics. Mol. Gen. Genet. 240:159-169.
    • (1993) Mol. Gen. Genet. , vol.240 , pp. 159-169
    • Kenton, A.1    Parokonny, A.S.2    Gleba, Y.Y.3    Bennett, M.D.4
  • 19
    • 0033007251 scopus 로고    scopus 로고
    • RNA editing in an untranslated region of the ginkgo chloroplast genome
    • Kudla, J., and R. Bock. 1999. RNA editing in an untranslated region of the ginkgo chloroplast genome. Gene 234:81-86.
    • (1999) Gene , vol.234 , pp. 81-86
    • Kudla, J.1    Bock, R.2
  • 20
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • Maier, R. M., K. Neckermann, G. L. Igloi, and H. Kössel. 1995. Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J. Mol. Biol. 251:614-628.
    • (1995) J. Mol. Biol. , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kössel, H.4
  • 22
    • 0023476294 scopus 로고
    • Six chloroplast genes (ndhA-F) homologous to human mitochondrial genes encoding components of the respiratory chain NADH dehydrogenase are actively expressed: Determination of the splice sites in ndhA and ndhB pre-mRNAs
    • Matsubayashi, T., T. Wakasugi, K. Shinozaki et al. (12 co-authors). 1987. Six chloroplast genes (ndhA-F) homologous to human mitochondrial genes encoding components of the respiratory chain NADH dehydrogenase are actively expressed: determination of the splice sites in ndhA and ndhB pre-mRNAs. Mol. Gen. Genet. 210:385-393.
    • (1987) Mol. Gen. Genet. , vol.210 , pp. 385-393
    • Matsubayashi, T.1    Wakasugi, T.2    Shinozaki, K.3
  • 23
    • 0031885407 scopus 로고    scopus 로고
    • Transcript analysis of the tobacco plastid operon rps2/atpI/H/ F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpI coding sequence
    • Miyagi, T., S. Kapoor, M. Sugita, and M. Sugiura. 1998. Transcript analysis of the tobacco plastid operon rps2/atpI/H/ F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpI coding sequence. Mol. Gen. Genet. 257:299-307.
    • (1998) Mol. Gen. Genet. , vol.257 , pp. 299-307
    • Miyagi, T.1    Kapoor, S.2    Sugita, M.3    Sugiura, M.4
  • 24
    • 0036784578 scopus 로고    scopus 로고
    • Recognition of RNA editing sites is directed by unique proteins in chloroplasts: Biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts
    • Miyamoto, T., J. Obokata, and M. Sugiura. 2002. Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts. Mol. Cell. Biol. 22:6726-6734.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 6726-6734
    • Miyamoto, T.1    Obokata, J.2    Sugiura, M.3
  • 25
    • 0035169045 scopus 로고    scopus 로고
    • Heat stress results in incomplete C-to-U editing of maize chloroplast mRNAs and correlates with changes in chloroplast transcription level
    • Nakajima, Y., and R. M. Mulligan. 2001. Heat stress results in incomplete C-to-U editing of maize chloroplast mRNAs and correlates with changes in chloroplast transcription level. Curr. Genet. 40:209-213.
    • (2001) Curr. Genet. , vol.40 , pp. 209-213
    • Nakajima, Y.1    Mulligan, R.M.2
  • 26
    • 0027933141 scopus 로고
    • The role of RNA editing in conservation of start codons in chloroplast genomes
    • Neckermann, K., P. Zeltz, G. L. Igloi, H. Kössel, and R. M. Maier. 1994. The role of RNA editing in conservation of start codons in chloroplast genomes. Gene 146:177-182.
    • (1994) Gene , vol.146 , pp. 177-182
    • Neckermann, K.1    Zeltz, P.2    Igloi, G.L.3    Kössel, H.4    Maier, R.M.5
  • 27
    • 0002090280 scopus 로고
    • Chloroplast DNA and systematics in the solanaceae
    • J. G. Hawkes, R. N. Lester, M. Nee and N. Estrada, eds. Kew, Royal Botanic Gardens, Linnean Society of London, London
    • Olmstead, R., and J. D. Palmer. 1991. Chloroplast DNA and systematics in the solanaceae. Pp.301-320 in J. G. Hawkes, R. N. Lester, M. Nee and N. Estrada, eds. Solanaceae III. Taxonomy, chemistry and evolution. Kew, Royal Botanic Gardens, Linnean Society of London, London.
    • (1991) Solanaceae III. Taxonomy, Chemistry and Evolution , pp. 301-320
    • Olmstead, R.1    Palmer, J.D.2
  • 28
    • 0036233350 scopus 로고    scopus 로고
    • Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression
    • Peeters, N. M., and M. R. Hanson. 2002. Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression. RNA 8:497-511.
    • (2002) RNA , vol.8 , pp. 497-511
    • Peeters, N.M.1    Hanson, M.R.2
  • 29
    • 0030657928 scopus 로고    scopus 로고
    • A heterologous maize rpoB editing site is recognized by transgenic tobacco chloroplasts
    • Reed, M. L., and M. R. Hanson. 1997. A heterologous maize rpoB editing site is recognized by transgenic tobacco chloroplasts. Mol. Cell. Biol. 17:6948-6952.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 6948-6952
    • Reed, M.L.1    Hanson, M.R.2
  • 30
    • 0035845008 scopus 로고    scopus 로고
    • Edited transcripts compete with unedited mRNAs for trans-acting editing factors in higher plant chloroplasts
    • Reed, M. L., S. M. Lyi, and R. M. Hanson. 2001. Edited transcripts compete with unedited mRNAs for trans-acting editing factors in higher plant chloroplasts. Gene 272:165-171.
    • (2001) Gene , vol.272 , pp. 165-171
    • Reed, M.L.1    Lyi, S.M.2    Hanson, R.M.3
  • 31
    • 0035141874 scopus 로고    scopus 로고
    • Posttranscriptional control of chloroplast gene expression: From RNA to photosynthetic complex
    • Rochaix, J. D. 2001. Posttranscriptional control of chloroplast gene expression: from RNA to photosynthetic complex. Plant Physiol. 125:142-144.
    • (2001) Plant Physiol. , vol.125 , pp. 142-144
    • Rochaix, J.D.1
  • 32
    • 1842293352 scopus 로고    scopus 로고
    • Tissue-specific and differential editing of the two ycf3 editing sites in maize plastids
    • Ruf, S., and H. Kössel. 1997. Tissue-specific and differential editing of the two ycf3 editing sites in maize plastids. Curr. Genet. 32:19-23.
    • (1997) Curr. Genet. , vol.32 , pp. 19-23
    • Ruf, S.1    Kössel, H.2
  • 33
    • 0035801484 scopus 로고    scopus 로고
    • Heterologous, splicing-dependent RNA editing in chloroplasts: Allotetraploidy provides trans-factors
    • Schmitz-Linneweber, C., M. Tillicch, R. G. Herrmann, and R. M. Maier. 2001. Heterologous, splicing-dependent RNA editing in chloroplasts: allotetraploidy provides trans-factors. EMBO J. 20:4874-4883.
    • (2001) EMBO J. , vol.20 , pp. 4874-4883
    • Schmitz-Linneweber, C.1    Tillicch, M.2    Herrmann, R.G.3    Maier, R.M.4
  • 34
    • 84968989005 scopus 로고
    • The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
    • Shinozaki, K., M. Ohme, M. Tanaka et al. (19 co-authors). 1986. The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J. 5:2043-2049.
    • (1986) EMBO J. , vol.5 , pp. 2043-2049
    • Shinozaki, K.1    Ohme, M.2    Tanaka, M.3
  • 35
    • 0038789259 scopus 로고
    • Nicotiana
    • R. C. King, ed. Plenum Press, New York
    • Smith, H. H. 1974. Nicotiana. Pp.281-314 in R. C. King, ed. Handbook of genetics 2. Plenum Press, New York.
    • (1974) Handbook of Genetics 2 , pp. 281-314
    • Smith, H.H.1
  • 36
    • 0026860017 scopus 로고
    • The chloroplast genome
    • Sugiura, M. 1992. The chloroplast genome. Plant Mol. Biol. 18:149-168.
    • (1992) Plant Mol. Biol. , vol.18 , pp. 149-168
    • Sugiura, M.1
  • 37
    • 0032411339 scopus 로고    scopus 로고
    • Evolution and mechanism of translation in chloroplasts
    • Sugiura, M., T. Hirose, and M. Sugita. 1998. Evolution and mechanism of translation in chloroplasts. Annu. Rev. Genet. 32:437-459.
    • (1998) Annu. Rev. Genet. , vol.32 , pp. 437-459
    • Sugiura, M.1    Hirose, T.2    Sugita, M.3
  • 38
    • 0027398358 scopus 로고
    • High frequency plastid transformation in tobacco by selection for a chimeric aadA gene
    • Svab, Z., and P. Maliga. 1993. High frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proc. Natl. Acad. Sci. USA 90:913-917.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 913-917
    • Svab, Z.1    Maliga, P.2
  • 39
    • 0029781740 scopus 로고    scopus 로고
    • Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: The pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms
    • Wakasugi, T., T. Hirose, M. Horihata, T. Tsudzuki, H. Kössel, and M. Sugiura. 1996. Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: the pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms. Proc. Natl. Acad. Sci. USA 93:8766-8770.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8766-8770
    • Wakasugi, T.1    Hirose, T.2    Horihata, M.3    Tsudzuki, T.4    Kössel, H.5    Sugiura, M.6
  • 41
    • 0028043489 scopus 로고
    • Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine, Pinus thunbergii
    • Wakasugi, T., J. Tsudzuki, S. Ito, K. Nakashima, T. Tsudzuki, and M. Sugiura. 1994. Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine, Pinus thunbergii. Proc. Natl. Acad. Sci. USA 91:9794-9798.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 9794-9798
    • Wakasugi, T.1    Tsudzuki, J.2    Ito, S.3    Nakashima, K.4    Tsudzuki, T.5    Sugiura, M.6
  • 42
    • 0035711657 scopus 로고    scopus 로고
    • The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing
    • Wakasugi, T., T. Tsudzuki, and M. Sugiura. 2001. The genomics of land plant chloroplasts: gene content and alteration of genomic information by RNA editing. Photosynthesis Res. 70:107-118.
    • (2001) Photosynthesis Res. , vol.70 , pp. 107-118
    • Wakasugi, T.1    Tsudzuki, T.2    Sugiura, M.3
  • 43
    • 0029877354 scopus 로고    scopus 로고
    • Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants
    • Yoshinaga, K., H. Iinuma, T. Masuzawa, and K. Ueda. 1996. Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants. Nucleic Acids Res. 24:1008-1014.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1008-1014
    • Yoshinaga, K.1    Iinuma, H.2    Masuzawa, T.3    Ueda, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.