An expression map for Anopheles gambiae

BMC Genomics

Volumn 12, Issue , 2011, Pages

  MacCallum, Robert M ^a   Redmond, Seth N ^a,b   Christophides, George K ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

APL1C PROTEIN; BINDING PROTEIN; DEFENSIN; INSECT PROTEIN; MICRORNA; ODORANT BINDING PROTEIN; PEPTIDOGLYCAN RECOGNITION PROTEIN; PROTEIN LRIM1; PROTEIN TEP1; UNCLASSIFIED DRUG; CARRIER PROTEIN; ODORANT-BINDING PROTEIN; TRANSCRIPTOME;

ANOPHELES GAMBIAE; ARTICLE; CONTROLLED STUDY; DNA REPLICATION; EGG PRODUCTION; EMBRYO; FEMALE; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE INTERACTION; GENE LOCATION; GENETIC DISTANCE; HOUSEKEEPING GENE; HUMORAL IMMUNITY; IMMUNOGENETICS; IMMUNOREACTIVITY; INSECT GENETICS; INTESTINE EPITHELIUM; MALE; MICROARRAY ANALYSIS; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN INTERACTION; PROTEIN SYNTHESIS; SIGNAL TRANSDUCTION; ANIMAL; CHROMOSOME MAP; GENETICS; GENOME; METABOLISM; METHODOLOGY; OLFACTORY RECEPTOR;

ANOPHELES GAMBIAE;

ANIMALS; ANOPHELES GAMBIAE; CARRIER PROTEINS; CHROMOSOME MAPPING; DEFENSINS; GENE EXPRESSION PROFILING; GENOME; INSECT PROTEINS; RECEPTORS, ODORANT; TRANSCRIPTOME;

EID: 83655183284     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-620     Document Type: Article

References (36)

1. Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O'Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL. The genome sequence of the malaria mosquito Anopheles gambiae. Science 2002, 298:129-149. 10.1126/science.1076181, 12364791.
2. Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 2009, 37:D885-890. 10.1093/nar/gkn764, 2686538, 18940857.
3. Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M, Abeygunawardena N, Berube H, Dylag M, Emam I, Farne A, Holloway E, Lukk M, Malone J, Mani R, Pilicheva E, Rayner TF, Rezwan F, Sharma A, Williams E, Bradley XZ, Adamusiak T, Brandizi M, Burdett T, Coulson R, Krestyaninova M, Kurnosov P, Maguire E, Neogi SG, Rocca-Serra P, Sansone SA, Sklyar N, Zhao M, Sarkans U, Brazma A. ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res 2009, 37:D868-872. 10.1093/nar/gkn889, 2686529, 19015125.
4. Kapushesky M, Emam I, Holloway E, Kurnosov P, Zorin A, Malone J, Rustici G, Williams E, Parkinson H, Brazma A. Gene expression atlas at the European Bioinformatics Institute. Nucleic Acids Res 2010, 38:D690-698. 10.1093/nar/gkp936, 2808905, 19906730.
5. Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Hammond M, Hill CA, Konopinski N, Lobo NF, MacCallum RM, Madey G, Megy K, Meyer J, Redmond S, Severson DW, Stinson EO, Topalis P, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH. VectorBase: A data resource for invertebrate vector genomics. Nucleic Acids Res 2009, 37:D583-587. 10.1093/nar/gkn857, 2686483, 19028744.
6. Kim SK, Lund J, Kiraly M, Duke K, Jiang M, Stuart JM, Eizinger A, Wylie BN, Davidson GS. A gene expression map for Caenorhabditis elegans. Science 2001, 293:2087-2092. 10.1126/science.1061603, 11557892.
7. Vlachou D, Schlegelmilch T, Christophides GK, Kafatos FC. Functional genomic analysis of midgut epithelial responses in Anopheles during Plasmodium invasion. Curr Biol 2005, 15:1185-1195. 10.1016/j.cub.2005.06.044, 16005290.
8. Marinotti O, Nguyen QK, Calvo E, James AA, Ribeiro JM. Microarray analysis of genes showing variable expression following a blood meal in Anopheles gambiae. Insect Mol Biol 2005, 14:365-373. 10.1111/j.1365-2583.2005.00567.x, 16033430.
9. Müller P, Donnelly MJ, Ranson H. Transcription profiling of a recently colonised pyrethroid resistant Anopheles gambiae strain from Ghana. BMC Genomics 2007, 8:36. 10.1186/1471-2164-8-36, 1797171, 17261191.
10. Koutsos AC, Blass C, Meister S, Schmidt S, MacCallum RM, Soares MB, Collins FH, Benes V, Zdobnov E, Kafatos FC, Christophides GK. Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster. Proc Natl Acad Sci USA 2007, 104:11304-11309. 10.1073/pnas.0703988104, 2040894, 17563388.
11. Neira Oviedo M, Vanekeris L, Corena-McLeod MD, Linser PJ. A microarray-based analysis of transcriptional compartmentalization in the alimentary canal of Anopheles gambiae (Diptera: Culicidae) larvae. Insect Mol Biol 2008, 17:61-72. 10.1111/j.1365-2583.2008.00779.x, 18237285.
12. Müller P, Warr E, Stevenson BJ, Pignatelli PM, Morgan JC, Steven A, Yawson AE, Mitchell SN, Ranson H, Hemingway J, Paine MJ, Donnelly MJ. Field-caught permethrin-resistant Anopheles gambiae overexpress CYP6P3, a P450 that metabolises pyrethroids. PLoS Genet 2008, 4:e1000286. 10.1371/journal.pgen.1000286, 2583951, 19043575.
13. Rogers DW, Whitten MM, Thailayil J, Soichot J, Levashina EA, Catteruccia F. Molecular and cellular components of the mating machinery in Anopheles gambiae females. Proc Natl Acad Sci USA 2008, 105:19390-19395. 10.1073/pnas.0809723105, 2614771, 19036921.
14. Abrantes P, Dimopoulos G, Grosso AR, do Rosrio VE, Silveira H. Chloroquine mediated modulation of Anopheles gambiae gene expression. PLoS ONE 2008, 3:e2587. 10.1371/journal.pone.0002587, 2432468, 18596975.
15. Cassone BJ, Mouline K, Hahn MW, White BJ, Pombi M, Simard F, Costantini C, Besansky NJ. Differential gene expression in incipient species of Anopheles gambiae. Mol Ecol 2008, 17:2491-2504. 10.1111/j.1365-294X.2008.03774.x, 18430144.
16. Neira Oviedo M, Ribeiro JM, Heyland A, VanEkeris L, Moroz T, Linser PJ. The salivary transcriptome of Anopheles gambiae (Diptera: Culicidae) larvae: A microarray-based analysis. Insect Biochem Mol Biol 2009, 39:382-394. 10.1016/j.ibmb.2009.03.001, 2766661, 19328852.
17. Goltsev Y, Rezende GL, Vranizan K, Lanzaro G, Valle D, Levine M. Developmental and evolutionary basis for drought tolerance of the Anopheles gambiae embryo. Dev Biol 2009, 330:462-470. 10.1016/j.ydbio.2009.02.038, 19298808.
18. Kohonen T, Makisara K. The Self-organizing Feature Maps. Phys Scripta 1989, 39:168-172.
19. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651.
20. Lee HK, Braynen W, Keshav K, Pavlidis P. ErmineJ: tool for functional analysis of gene expression data sets. BMC Bioinformatics 2005, 6:269. 10.1186/1471-2105-6-269, 1310606, 16280084.
21. Xu PX, Zwiebel LJ, Smith DP. Identification of a distinct family of genes encoding atypical odorant-binding proteins in the malaria vector mosquito, Anopheles gambiae. Insect Mol Biol 2003, 12:549-560. 10.1046/j.1365-2583.2003.00440.x, 14986916.
22. Pennetier C, Warren B, Dabire KR, Russell IJ, Gibson G. "Singing on the wing" as a mechanism for species recognition in the malarial mosquito Anopheles gambiae. Curr Biol 2010, 20:131-136. 10.1016/j.cub.2009.11.040, 20045329.
23. Christophides GK, Vlachou D, Kafatos FC. Comparative and functional genomics of the innate immune system in the malaria vector Anopheles gambiae. Immunol Rev 2004, 198:127-148. 10.1111/j.0105-2896.2004.0127.x, 15199960.
24. Reiser JB, Teyton L, Wilson IA. Crystal structure of the Drosophila peptidoglycan recognition protein (PGRP)-SA at 1.56 A resolution. J Mol Biol 2004, 340:909-917. 10.1016/j.jmb.2004.04.077, 15223330.
25. Zaidman-Rémy A, Hervé M, Poidevin M, Pili-Floury S, Kim MS, Blanot D, Oh BH, Ueda R, Mengin-Lecreulx D, Lemaitre B. The Drosophila amidase PGRP-LB modulates the immune response to bacterial infection. Immunity 2006, 24:463-473. 10.1016/j.immuni.2006.02.012, 16618604.
26. Povelones M, Waterhouse RM, Kafatos FC, Christophides GK. Leucine-rich repeat protein complex activates mosquito complement in defense against Plasmodium parasites. Science 2009, 324:258-261. 10.1126/science.1171400, 2790318, 19264986.
27. Waterhouse RM, Povelones M, Christophides GK. Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins. BMC Genomics 2010, 11:531. 10.1186/1471-2164-11-531, 3020904, 20920294.
28. Dong Y, Aguilar R, Xi Z, Warr E, Mongin E, Dimopoulos G. Anopheles gambiae immune responses to human and rodent Plasmodium parasite species. PLoS Pathog 2006, 2:e52. 10.1371/journal.ppat.0020052, 1475661, 16789837.
29. Marcombe S, Poupardin R, Darriet F, Reynaud S, Bonnet J, Strode C, Brengues C, Yebakima A, Ranson H, Corbel V, David JP. Exploring the molecular basis of insecticide resistance in the dengue vector Aedes aegypti: a case study in Martinique Island (French West Indies). BMC Genomics 2009, 10:494. 10.1186/1471-2164-10-494, 2770535, 19857255.
30. Laramie JM, Chung TP, Brownstein B, Stormo GD, Cobb JP. Transcriptional profiles of human epithelial cells in response to heat: computational evidence for novel heat shock proteins. Shock 2008, 29:623-630.
31. Baker DA, Nolan T, Fischer B, Pinder A, Crisanti A, Russell S. A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae. BMC Genomics 2011, 12:296. 10.1186/1471-2164-12-296, 3129592, 21649883.
32. Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol 2002, 3:SOFTWARE0003. 139402, 12186655.
33. Cleveland WS. Robust Locally Weighted Regression and Smoothing Scatterplots. Journal of the American Statistical Association 1979, 74(368):829-836., http://www.jstor.org/stable/2286407
34. Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 2003, 31:e15. 10.1093/nar/gng015, 150247, 12582260.
35. Cleaver JE. DNA repair and its coupling to DNA replication in eukaryotic cells. Biochim Biophys Acta 1978, 516:489-516.
36. Wild K, Halic M, Sinning I, Beckmann R. SRP meets the ribosome. Nat Struct Mol Biol 2004, 11:1049-1053. 10.1038/nsmb853, 15523481.