Characterization of Nme6-like gene/protein from marine sponge Suberites domuncula

Naunyn-Schmiedeberg's Archives of Pharmacology

Volumn 384, Issue 4-5, 2011, Pages 451-460

  Perina, Drago ^a   Bosnar, Maja Herak ^a   Mikoč, Andreja ^a   Müller, Werner E G ^b   Ćetković, Helena ^a  

^a RUDER BO KOVI INSTITUTE   (Croatia)

^b JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

Gene structure; NDPK; Nm23; Nme6; Porifera; Subcellular localization

Indexed keywords

LACTATE DEHYDROGENASE; MICRORNA; NME6 PROTEIN; NUCLEOSIDE DIPHOSPHATE KINASE; PROTEIN; PYRUVATE KINASE; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CONFOCAL LASER MICROSCOPY; CONTROLLED STUDY; ENZYME ACTIVITY; ESCHERICHIA COLI; HELA CELL; HUMAN; HUMAN CELL; NONHUMAN; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; PROTEIN STRUCTURE, FUNCTION AND VARIABILITY; STRUCTURAL BIOINFORMATICS; SUBERITES; SUBERITES DOMUNCULA; TUMOR CELL;

ANIMALS; BASE SEQUENCE; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; HELA CELLS; HUMANS; INTRONS; MICROSCOPY, CONFOCAL; MOLECULAR SEQUENCE DATA; NM23 NUCLEOSIDE DIPHOSPHATE KINASES; PROTEIN STRUCTURE, SECONDARY; SUBCELLULAR FRACTIONS; SUBERITES; TRANSFECTION;

EID: 83555174615     PISSN: 00281298     EISSN: 14321912     Source Type: Journal    
DOI: 10.1007/s00210-011-0635-9     Document Type: Article

References (39)

1. RP Agarwal B Robison RE Parks Jr 1978 Nucleoside diphosphokinase from human erythrocytes Meth Enzymol 51 376 386 211386 10.1016/S0076-6879(78)51051-3 1:CAS:528:DyaE1MXjsFegug%3D%3D
2. V Ambros B Bartel DP Bartel CB Burge JC Carrington X Chen G Dreyfuss SR Eddy S Griffiths-Jones M Marshall M Matzke G Ruvkun T Tuschl 2003 A uniform system for microRNA annotation RNA 9 277 279 12592000 10.1261/rna.2183803 1:CAS:528:DC%2BD3sXhslWjur0%3D (Pubitemid 36246165)
3. DP Bartel 2004 MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 281 297 14744438 10.1016/S0092-8674(04)00045-5 1:CAS:528: DC%2BD2cXhtVals7o%3D (Pubitemid 38167318)
4. A Bilitou J Watson A Gartner S Ohnuma 2009 The NM23 family in development Mol Cell Biochem 329 17 33 19421718 10.1007/s11010-009-0121-6 1:CAS:528:DC%2BD1MXpsValt7k%3D
5. M Boissan S Dabernat E Peuchant U Schlattner I Lascu ML Lacombe 2009 The mammalian Nm23/NDPK family: from metastasis control to cilia movement Mol Cell Biochem 329 51 62 19387795 10.1007/s11010-009-0120-7 1:CAS:528: DC%2BD1MXpsValtLo%3D
6. H Cetkovic WE Muller V Gamulin 2004 Bruton tyrosine kinase-like protein, BtkSD, is present in the marine sponge Suberites domuncula Genomics 83 743 745 15028297 10.1016/j.ygeno.2003.09.010 1:CAS:528:DC%2BD2cXitVGqs7k%3D (Pubitemid 38340816)
7. H Cetkovic A Mikoc WE Muller V Gamulin 2007 Ras-like small GTPases form a large family of proteins in the marine sponge Suberites domuncula J Mol Evol 64 332 341 17334709 10.1007/s00239-006-0081-3 1:CAS:528:DC%2BD2sXisV2nt78%3D (Pubitemid 46364877)
8. MG Claros P Vincens 1996 Computational method to predict mitochondrially imported proteins and their targeting sequences Eur J Biochem 241 779 786 8944766 10.1111/j.1432-1033.1996.00779.x 1:CAS:528:DyaK28XmvFCjurw%3D (Pubitemid 26379380)
9. T Desvignes P Pontarotti C Fauvel J Bobe 2009 Nme protein family evolutionary history, a vertebrate perspective BMC Evol Biol 9 256 19852809 10.1186/1471-2148-9-256
10. T Desvignes P Pontarotti J Bobe 2010 Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone. Nematostella vectensis PLoS ONE 5 e15506 21085602 10.1371/journal.pone. 0015506
11. Z Fan PJ Beresford DY Oh D Zhang J Lieberman 2003 Tumor suppressor NM23-H1 is a granzyme A-activated DNase during CTL-mediated apoptosis, and the nucleosome assembly protein SET is its inhibitor Cell 112 659 672 12628186 10.1016/S0092-8674(03)00150-8 1:CAS:528:DC%2BD3sXitFykurc%3D (Pubitemid 36331778)
12. AM Gilles E Presecan A Vonica I Lascu 1991 Nucleoside diphosphate kinase from human erythrocytes. Structural characterization of the two polypeptide chains responsible for heterogeneity of the hexameric enzyme J Biol Chem 266 8784 8789 1851158 1:CAS:528:DyaK38XislOq (Pubitemid 21906583)
13. A Grimson M Srivastava B Fahey BJ Woodcroft HR Chiang N King BM Degnan DS Rokhsar DP Bartel 2008 Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals Nature 455 1193 1197 18830242 10.1038/nature07415 1:CAS:528:DC%2BD1cXhtlSku7jJ
14. M Harcet L Lukic-Bilela H Cetkovic WEG Muller V Gamulin 2005 Identification and analysis of cDNAs encoding two nucleoside diphosphate kinases (NDPK/Nm23) from the marine sponge Suberites domuncula Croat Chem Acta 78 343 348 1:CAS:528:DC%2BD2MXhtF2ktL3K (Pubitemid 41525954)
15. M Harcet M Roller H Cetkovic D Perina M Wiens WE Muller K Vlahovicek 2010 Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans Mol Biol Evol 27 2747 2756 20621960 10.1093/molbev/msq174 1:CAS:528:DC%2BC3cXhsVeksLvI
16. MT Hartsough DK Morrison M Salerno D Palmieri T Ouatas M Mair J Patrick PS Steeg 2002 Nm23-H1 metastasis suppressor phosphorylation of kinase suppressor of Ras via a histidine protein kinase pathway J Biol Chem 277 32389 32399 12105213 10.1074/jbc.M203115200 1:CAS:528:DC%2BD38Xmslyjtr4%3D (Pubitemid 34969057)
17. T Heinemeyer E Wingender I Reuter H Hermjakob AE Kel OV Kel EV Ignatieva EA Ananko OA Podkolodnaya FA Kolpakov NL Podkolodny NA Kolchanov 1998 Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL Nucleic Acids Res 26 362 367 9399875 10.1093/nar/26.1.362 1:CAS:528:DyaK1cXovVCktQ%3D%3D (Pubitemid 28295292)
18. IL Hofacker 2003 Vienna RNA secondary structure server Nucleic Acids Res 31 3429 3431 12824340 10.1093/nar/gkg599 1:CAS:528:DC%2BD3sXltVWisrs%3D (Pubitemid 37442172)
19. MW Jones-Rhoades DP Bartel B Bartel 2006 MicroRNAS and their regulatory roles in plants Annu Rev Plant Biol 57 19 53 16669754 10.1146/annurev.arplant. 57.032905.105218 1:CAS:528:DC%2BD28XosVKhsb0%3D (Pubitemid 44061017)
20. CW Li JY Chen TE Hua 1998 Precambrian sponges with cellular structures Science 279 879 882 9452391 10.1126/science.279.5352.879 1:CAS:528: DyaK1cXhtVOitbw%3D (Pubitemid 28106285)
21. JG Mehus P Deloukas DO Lambeth 1999 NME6: a new member of the nm23/nucleoside diphosphate kinase gene family located on human chromosome 3p21.3 Hum Genet 104 454 459 10453732 10.1007/s004390050987 1:CAS:528: DyaK1MXkt1Omu7o%3D (Pubitemid 29370919)
22. L Milanesi M Muselli P Arrigo 1996 Hamming-Clustering method for signals prediction in 5′ and 3′ regions of eukaryotic genes Comput Appl Biosci 12 399 404 8996788 1:CAS:528:DyaK2sXoslGmuw%3D%3D
23. L Milon P Meyer M Chiadmi A Munier M Johansson A Karlsson I Lascu J Capeau J Janin ML Lacombe 2000 The human nm23-H4 gene product is a mitochondrial nucleoside diphosphate kinase J Biol Chem 275 14264 14272 10799505 10.1074/jbc.275.19.14264 1:CAS:528:DC%2BD3cXjt1Cnsrk%3D (Pubitemid 30339707)
24. Muller WE, Bohm M, Grebenjuk VA, Skorokhod A, Muller IM,Gamulin V (2002) Conservation of the positions of metazoan introns from sponges to humans. Gene 295:299-309 (Pubitemid 35279262)
25. A Munier C Feral L Milon VP Pinon G Gyapay J Capeau G Guellaen ML Lacombe 1998 A new human nm23 homologue (nm23-H5) specifically expressed in testis germinal cells FEBS Lett 434 289 94 9742940 10.1016/S0014-5793(98)00996-X 1:CAS:528:DyaK1cXmt1yjtro%3D (Pubitemid 29052242)
26. A Munier C Serres ML Kann M Boissan C Lesaffre J Capeau JP Fouquet ML Lacombe 2003 Nm23/NDP kinases in human male germ cells: role in spermiogenesis and sperm motility? Exp Cell Res 289 295 306 14499630 10.1016/S0014-4827(03) 00268-4 1:CAS:528:DC%2BD3sXnt1Ggtb0%3D (Pubitemid 37117415)
27. D Perina H Cetkovic M Harcet M Premzl L Lukic-Bilela WE Muller V Gamulin 2006 The complete set of ribosomal proteins from the marine sponge Suberites domuncula Gene 366 275 284 16229974 10.1016/j.gene.2005.08.015 1:CAS:528:DC%2BD28XhsFGjsLw%3D (Pubitemid 43227952)
28. D Perina M Herak Bosnar R Bago A Mikoc M Harcet M Dezeljin H Cetkovic 2011 Sponge non-metastatic group I Nme gene/protein-structure and function is conserved from sponges to humans BMC Evol Biol 11 87 21457554 10.1186/1471-2148-11-87 1:CAS:528:DC%2BC3MXltV2hu7k%3D
29. H Philippe R Derelle P Lopez K Pick C Borchiellini N Boury-Esnault J Vacelet E Renard E Houliston E Quéinnec C Da Silva P Wincker H Le Guyader S Leys DJ Jackson F Schreiber D Erpenbeck B Morgenstern G Wörheide M Manuel 2009 Phylogenomics revives traditional views on deep animal relationships Curr Biol CB 19 706 712 10.1016/j.cub.2009.02.052
30. EH Postel 2003 Multiple biochemical activities of NM23/NDP kinase in gene regulation J Bioenerg Biomembr 35 31 40 12848339 10.1023/A:1023485505621 1:CAS:528:DC%2BD3sXjtVGrurs%3D (Pubitemid 36667578)
31. EH Postel CA Ferrone 1994 Nucleoside diphosphate kinase enzyme activity of NM23-H2/PuF is not required for its DNA binding and in vitro transcriptional functions J Biol Chem 269 8627 8630 8132589 1:CAS:528:DyaK2cXktVelurg%3D (Pubitemid 24209162)
32. F Raible K Tessmar-Raible K Osoegawa P Wincker C Jubin G Balavoine D Ferrier V Benes P de Jong J Weissenbach P Bork D Arendt 2005 Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii Science 310 1325 1326 16311335 10.1126/science.1119089 1:CAS:528:DC%2BD2MXht1Gqsr3F (Pubitemid 41698863)
33. Seack J, Perovic S, Gamulin V, Schroder HC, Beutelmann P, Muller IM, Muller WE (2001) Identification of highly conserved genes: SNZ and SNO in the marine sponge Suberites domuncula: their gene structure and promoter activity in mammalian cells(1). Biochim Biophys Acta 1520:21-34 (Pubitemid 32721931)
34. M Seifert C Welter Y Mehraein G Seitz 2005 Expression of the nm23 homologues nm23-H4, nm23-H6, and nm23-H7 in human gastric and colon cancer J Pathol 205 623 632 15726650 10.1002/path.1724 1:CAS:528:DC%2BD2MXjvVajtbk%3D (Pubitemid 40514836)
35. M Srivastava O Simakov J Chapman B Fahey ME Gauthier T Mitros GS Richards C Conaco M Dacre U Hellsten C Larroux NH Putnam M Stanke M Adamska A Darling SM Degnan TH Oakley DC Plachetzki Y Zhai M Adamski A Calcino SF Cummins DM Goodstein C Harris DJ Jackson SP Leys S Shu BJ Woodcroft M Vervoort KS Kosik G Manning BM Degnan DS Rokhsar 2010 The Amphimedon queenslandica genome and the evolution of animal complexity Nature 466 720 726 20686567 10.1038/nature09201 1:CAS:528:DC%2BC3cXhtVSmurfP
36. PS Steeg G Bevilacqua L Kopper UP Thorgeirsson JE Talmadge LA Liotta ME Sobel 1988 Evidence for a novel gene associated with low tumor metastatic potential J Natl Cancer Inst 80 200 204 3346912 10.1093/jnci/80.3.200 1:CAS:528:DyaL1cXktVWltLg%3D
37. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 9396791 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
38. H Tsuiki M Nitta A Furuya N Hanai T Fujiwara M Inagaki M Kochi Y Ushio H Saya H Nakamura 1999 A novel human nucleoside diphosphate (NDP) kinase, Nm23-H6, localizes in mitochondria and affects cytokinesis J Cell Biochem 76 254 269 10618642 10.1002/(SICI)1097-4644(20000201)76:2<254::AID-JCB9>3.0.CO;2-G 1:STN:280:DC%2BD3c%2Fos12iug%3D%3D (Pubitemid 30030773)
39. AL Zimmerman S Wu 2010 MicroRNAs, cancer and cancer stem cells Cancer Lett 300 10 19 20965651 10.1016/j.canlet.2010.09.019