Use of ultra-performance liquid chromatography/time-of-flight mass spectrometry with nozzle-skimmer fragmentation for comprehensive quantitative analysis of secondary metabolites in Arabidopsis thaliana

Journal of Separation Science

Volumn 34, Issue 24, 2011, Pages 3587-3596

  Sugimoto, Takanori ^a   Bamba, Takeshi ^a   Izumi, Yoshihiro ^b   Nomura, Hironari ^c   Shiina, Takashi ^d   Fukusaki, Eiichiro ^a  

^a OSAKA UNIVERSITY   (Japan)

^b KOBE UNIVERSITY   (Japan)

^c NAGOYA UNIVERSITY   (Japan)

^d KYOTO PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Arabidopsis thaliana; Metabolomics; Nozzle skimmer fragmentation; Secondary metabolite; Time of flight mass spectrometry; Ultra performance liquid chromatography

Indexed keywords

ARABIDOPSIS THALIANA; METABOLOMICS; NOZZLE-SKIMMER FRAGMENTATION; SECONDARY METABOLITES; TIME OF FLIGHT MASS SPECTROMETRY; ULTRAPERFORMANCE LIQUID CHROMATOGRAPHY;

BIOCHEMISTRY; BIOMOLECULES; IONS; LIQUID CHROMATOGRAPHY; LIQUIDS; MASS SPECTROMETRY; METABOLISM; MULTIVARIANT ANALYSIS; NOZZLES;

METABOLITES;

ARABIDOPSIS; ARTICLE; ELECTRIC POTENTIAL; INTERMETHOD COMPARISON; MASS SPECTROMETRY; MEASUREMENT; METABOLOMICS; NONHUMAN; NOZZLE SKIMMER FRAGMENTATION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RELIABILITY; TIME OF FLIGHT MASS SPECTROMETRY; ULTRA PERFORMANCE LIQUID CHROMATOGRAPHY;

ARABIDOPSIS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; MASS SPECTROMETRY; MULTIVARIATE ANALYSIS; TIME FACTORS;

EID: 83455253947     PISSN: 16159306     EISSN: 16159314     Source Type: Journal    
DOI: 10.1002/jssc.201100552     Document Type: Article

References (20)

1. Buchholz, A., Takors, R., Wandrey, C., Anal. Biochem. 2001, 295, 129-137.
2. Ishihama, Y., J. Chromatogr. A 2005, 1067, 73-83.
3. Shen, Y., Toli, N., Masselon, C., Paša-ToliÄ?, L., Camp, D. G., Hixson, K. K., Zhao, R., Anderson, G. A., Smith, R. D., Anal. Chem. 2004, 76, 144-154.
4. Sreekumar, A., Poisson, L. M., Rajendiran, T. M., Khan, A. P., Cao, Q., Yu, J., Laxman, B., Mehra, R., Lonigro, R. J., Li, Y., Nyati, M. K., Ahsan, A., Kalyana-Sundaram, S., Han, B., Cao, X., Byun, J., Omenn, G. S., Ghosh, D., Pennathur, S., Alexander, D. C., Berger, A., Shuster, J. R., Wei, J. T., Varambally, S., Beecher, C., Chinnaiyan, A. M., Nature 2009, 457, 910-914.
5. Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D., Nat. Chem. Biol. 2009, 5, 593-599.
6. Tong, X. S., Wang, J., Zheng, S., Pivnichny, J. V., Griffin, P. R., Shen, X., Donnelly, M., Vakerich, K., Nunes, C., Fenyk-Melody, J., Anal. Chem. 2002, 74, 6305-6313.
7. Bino, R. J., Hall, R. D., Fiehn, O., Kopka, J., Saito, K., Draper, J., Nikolau, B. J., Mendes, P., Roessner-Tunali, U., Beale, M. H., Trethewey, R. N., Lange, B. M., Wurtele, E. S., Sumner, L. W., Trends Plant Sci. 2004, 9, 418-425.
8. Moco, S., Vervoort, J., Bino, R. J., De Vos, R. C. H., Bino, R., TrAC Trends Anal. Chem. 2007, 26, 855-866.
9. Matsuda, F., Yonekura-Sakakibara, K., Niida, R., Kuromori, T., Shinozaki, K., Saito, K., Plant J. 2009, 57, 555-577.
10. Hernandez, P., Muller, M., Appel, R. D., Mass Spectrom. Rev. 2006, 25, 235-254.
11. Bottcher, C., von Roepenack-Lahaye, E., Schmidt, J., Schmotz, C., Neumann, S., Scheel, D., Clemens, S., Plant Physiol. 2008, 147, 2107-2120.
12. Cao, M., Koulman, A., Johnson, L. J., Lane, G. A., Rasmussen, S., Plant Physiol. 2008, 146, 1501-1514.
13. Soga, T., Baran, R., Suematsu, M., Ueno, Y., Ikeda, S., Sakurakawa, T., Kakazu, Y., Ishikawa, T., Robert, M., Nishioka, T., Tomita, M., J. Biol. Chem. 2006, 281, 16768-16776.
14. Takahashi, H., Kai, K., Shinbo, Y., Tanaka, K., Ohta, D., Oshima, T., Altaf-Ul-Amin, M., Kurokawa, K., Ogasawara, N., Kanaya, S., Anal. Bioanal. Chem. 2008, 391, 2769-2782.
15. Dettmer, K., Aronov, P. A., Hammock, B. D., Mass Spectrom. Rev. 2007, 26, 51-78.
16. Villas-Boas, S. G., Mas, S., Akesson, M., Smedsgaard, J., Nielsen, J., Mass Spectrom. Rev. 2005, 24, 613-646.
17. Matsuda, F., Hirai, M. Y., Sasaki, E., Akiyama, K., Yonekura-Sakakibara, K., Provart, N. J., Sakurai, T., Shimada, Y., Saito, K., Plant Physiol. 2010, 152, 566-578.
18. Mezcua, M., Malato, O., García-Reyes, J. F., Molina-Díaz, A., Fernández-Alba, A. R., Anal. Chem. 2009, 81, 913-929.
19. Nomura, H., Komori, T., Kobori, M., Nakahira, Y., Shiina, T., Plant J. 2008, 53, 988-998.
20. Kanaya, S., Kinouchi, M., Abe, T., Kudo, Y., Yamada, Y., Nishi, T., Mori, H., Ikemura, T., Gene 2001, 276, 89-99.