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Volumn 135, Issue 21, 2011, Pages

A data-integrated method for analyzing stochastic biochemical networks

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL NETWORK; BIOCHEMICAL REACTIONS; BIOLOGICAL NETWORKS; BIOLOGICAL OSCILLATORS; BIOLOGICAL PROBLEMS; CHEMICAL MASTER EQUATION; COMPUTATIONALLY EFFICIENT; CONTINUOUS TIME; EXPERIMENTAL CONDITIONS; FITTING PARAMETERS; FUNCTIONAL RELATIONSHIP; GENETIC CIRCUITS; HIGHER ORDER MOMENTS; KINETIC MONTE CARLO; KINETIC RATE CONSTANTS; MOMENT CLOSURE; MOMENT EQUATIONS; NETWORK FUNCTIONS; SEARCH PROCEDURES; SIMPLE SYSTEM; STOCHASTIC DISTRIBUTION; STOCHASTIC NATURE; STOCHASTIC NETWORK MODELS; STOCHASTIC SIMULATION ALGORITHMS; STOCHASTICITY;

EID: 83455163871     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3664126     Document Type: Article
Times cited : (9)

References (26)
  • 1
    • 34447104600 scopus 로고    scopus 로고
    • Stability and Nuclear Dynamics of the Bicoid Morphogen Gradient
    • DOI 10.1016/j.cell.2007.05.026, PII S0092867407006630
    • T. Gregor, E. Wieschaus, A. McGregor, W. Bialek, and D. Tank, Cell 130, 141 (2007). 10.1016/j.cell.2007.05.026 (Pubitemid 47031319)
    • (2007) Cell , vol.130 , Issue.1 , pp. 141-152
    • Gregor, T.1    Wieschaus, E.F.2    McGregor, A.P.3    Bialek, W.4    Tank, D.W.5
  • 2
    • 34447099234 scopus 로고    scopus 로고
    • Probing the Limits to Positional Information
    • DOI 10.1016/j.cell.2007.05.025, PII S0092867407006629
    • T. Gregor, D. Tank, E. Wieschaus, and W. Bialek, Cell 130, 153 (2007). 10.1016/j.cell.2007.05.025 (Pubitemid 47031318)
    • (2007) Cell , vol.130 , Issue.1 , pp. 153-164
    • Gregor, T.1    Tank, D.W.2    Wieschaus, E.F.3    Bialek, W.4
  • 4
    • 4644343922 scopus 로고    scopus 로고
    • Bacterial persistence as a phenotypic switch
    • DOI 10.1126/science.1099390
    • N. Balaban, J. Merrin, R. Chait, L. Kowalik, and S. Leibler, Science 305, 1622 (2004). 10.1126/science.1099390 (Pubitemid 39296357)
    • (2004) Science , vol.305 , Issue.5690 , pp. 1622-1625
    • Balaban, N.Q.1    Merrin, J.2    Chait, R.3    Kowalik, L.4    Leibler, S.5
  • 7
    • 0035193294 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(01)75949-8
    • T. Kepler and T. Elston, J. Biophys. 81, 3116 (2001). 10.1016/S0006-3495(01)75949-8
    • (2001) J. Biophys. , vol.81 , pp. 3116
    • Kepler, T.1    Elston, T.2
  • 10
    • 20344389483 scopus 로고    scopus 로고
    • Models of stochastic gene expression
    • DOI 10.1016/j.plrev.2005.03.003, PII S1571064505000138
    • J. Paulsson, Phys. Life Rev. 2, 157 (2005). 10.1016/j.plrev.2005.03.003 (Pubitemid 40792434)
    • (2005) Physics of Life Reviews , vol.2 , Issue.2 , pp. 157-175
    • Paulsson, J.1
  • 12
    • 44049109914 scopus 로고
    • 10.1016/0378-4371(92)90283-V
    • D. Gillespie, Physica A. 408, 404 (1992). 10.1016/0378-4371(92)90283-V
    • (1992) Physica A. , vol.408 , pp. 404
    • Gillespie, D.1
  • 14
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • DOI 10.1016/0021-9991(76)90041-3
    • D. Gillespie, J. Comput. Phys. 22, 403 (1976). 10.1016/0021-9991(76) 90041-3 (Pubitemid 8008311)
    • (1976) Journal of Computational Physics , vol.22 , Issue.4 , pp. 403-434
    • Gillepsie, D.T.1
  • 15
    • 33751347484 scopus 로고    scopus 로고
    • The finite state projection algorithm for the solution of the chemical master equation
    • DOI 10.1063/1.2145882, 044104
    • B. Munsky and M. Khammash, J. Chem. Phys. 124, 044104 (2006). 10.1063/1.2145882 (Pubitemid 43166302)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.4 , pp. 1-13
    • Munsky, B.1    Khammash, M.2
  • 17
    • 0034225547 scopus 로고    scopus 로고
    • 10.1063/1.481811
    • D. Gillespie, J. Chem. Phys. 113, 297 (2000). 10.1063/1.481811
    • (2000) J. Chem. Phys. , vol.113 , pp. 297
    • Gillespie, D.1
  • 18
    • 33748962544 scopus 로고    scopus 로고
    • Computing the moments of high dimensional solutions of the master equation
    • DOI 10.1016/j.amc.2005.12.032, PII S0096300306000117
    • S. Engblom, Appl. Math. Comput. 180, 498 (2006). 10.1016/j.amc.2005.12. 032 (Pubitemid 44441535)
    • (2006) Applied Mathematics and Computation , vol.180 , Issue.2 , pp. 498-515
    • Engblom, S.1
  • 19
    • 33846250352 scopus 로고    scopus 로고
    • Mass fluctuation kinetics: Capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations
    • DOI 10.1063/1.2408422
    • C. Gomez-Uribe and G. Verghese, J. Chem. Phys. 126, 24109 (2007). 10.1063/1.2408422 (Pubitemid 46105653)
    • (2007) Journal of Chemical Physics , vol.126 , Issue.2 , pp. 024109
    • Gomez-Uribe, C.A.1    Verghese, G.C.2
  • 20
    • 34547683508 scopus 로고    scopus 로고
    • A derivative matching approach to moment closure for the stochastic logistic model
    • DOI 10.1007/s11538-007-9198-9
    • A. Singh and J. Hespanha, Bull. Math. Biol. 69, 1909 (2007). 10.1007/s11538-007-9198-9 (Pubitemid 47222244)
    • (2007) Bulletin of Mathematical Biology , vol.69 , Issue.6 , pp. 1909-1925
    • Singh, A.1    Hespanha, J.P.2
  • 21
    • 17644427718 scopus 로고    scopus 로고
    • Causal protein-signaling networks derived from multiparameter single-cell data
    • DOI 10.1126/science.1105809
    • K. Sachs, O. Perez, D. Peer, D. Lauffenburger, and G. Nolan, Science 308, 523 (2005). 10.1126/science.1105809 (Pubitemid 40570578)
    • (2005) Science , vol.308 , Issue.5721 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.A.4    Nolan, G.P.5
  • 25
    • 57049159362 scopus 로고    scopus 로고
    • A fast, robust and tunable synthetic gene oscillator
    • DOI 10.1038/nature07389, PII NATURE07389
    • J. Stricker, S. Cookson, M. Bennett, W. Mather, L. Tsimring, and J. Hasty, Nature (London) 456 (7221), 516 (2008). 10.1038/nature07389 (Pubitemid 352759003)
    • (2008) Nature , vol.456 , Issue.7221 , pp. 516-519
    • Stricker, J.1    Cookson, S.2    Bennett, M.R.3    Mather, W.H.4    Tsimring, L.S.5    Hasty, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.