Resistance to topoisomerase cleavage complex induced lethality in Escherichia coli via titration of transcription regulators PurR and FNR

BMC Microbiology

Volumn 11, Issue , 2011, Pages

  Liu, I Fen ^a   Aedo, Sandra ^a   Tse Dinh, Yuk Ching ^a  

^a NEW YORK MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; DNA TOPOISOMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING); NORFLOXACIN; PURINE; SPACER DNA; TRANSCRIPTION FACTOR; TRANSCRIPTION REGULATOR FNR; TRANSCRIPTION REGULATOR PURP; UNCLASSIFIED DRUG; ESCHERICHIA COLI PROTEIN; FNR PROTEIN, E COLI; IRON SULFUR PROTEIN; PURR PROTEIN, E COLI; QUINOLONE DERIVATIVE; REPRESSOR PROTEIN;

ARTICLE; BACTERIAL STRAIN; BIOACCUMULATION; CELL DEATH; CELL PROTECTION; CLONE; CONTROLLED STUDY; CULTURE MEDIUM; DNA PROTEIN COMPLEX; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE DOSAGE; GENE EXPRESSION REGULATION; GENE REPRESSION; GENOME ANALYSIS; LETHALITY; NONHUMAN; OXIDATIVE STRESS; PLASMID; PROTEIN EXPRESSION; PROTEIN FUNCTION; REGULATORY MECHANISM; SURVIVAL RATE; ANTIBIOTIC RESISTANCE; DRUG EFFECT; ENZYMOLOGY; GENETICS; METABOLISM; YERSINIA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

DNA TOPOISOMERASES, TYPE I; DRUG RESISTANCE, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; IRON-SULFUR PROTEINS; NORFLOXACIN; OXIDATIVE STRESS; QUINOLONES; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS; YERSINIA;

EID: 83155185477     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-11-261     Document Type: Article

References (35)

1. DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Schoeffler AJ, Berger JM, Q Rev Biophys 2008 41 1 41 101 18755053
2. DNA topoisomerase poisons as antitumor drugs. Liu LF, Annu Rev Biochem 1989 58 351 375 10.1146/annurev.bi.58.070189.002031 2549853 (Pubitemid 19172974)
3. Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. Bernard P, Couturier M, J Mol Biol 1992 226 3 735 745 10.1016/0022-2836(92)90629-X 1324324
4. Quinolone mode of action. Hooper DC, Drugs 1995 49 Suppl 2 10 15 8549276
5. Mechanism of fluoroquinolone action. Drlica K, Curr Opin Microbiol 1999 2 5 504 508 10.1016/S1369-5274(99)00008-9 10508721 (Pubitemid 29477177)
6. Involvement of reactive oxygen species in the action of ciprofloxacin against Escherichia coli. Goswami M, Mangoli SH, Jawali N, Antimicrob Agents Chemother 2006 50 3 949 954 10.1128/AAC.50.3.949-954.2006 16495256 (Pubitemid 43327799)
7. Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli. Dwyer DJ, Kohanski MA, Hayete B, Collins JJ, Mol Syst Biol 2007 3 91 17353933
8. A common mechanism of cellular death induced by bactericidal antibiotics. Kohanski MA, Dwyer DJ, Hayete B, Lawrence CA, Collins JJ, Cell 2007 130 5 797 810 10.1016/j.cell.2007.06.049 17803904 (Pubitemid 47332566)
9. Contribution of oxidative damage to antimicrobial lethality. Wang X, Zhao X, Antimicrob Agents Chemother 2009 53 4 1395 1402 10.1128/AAC.01087-08 19223646
10. Asp-to-Asn substitution at the first position of the DxD TOPRIM motif of recombinant bacterial topoisomerase I is extremely lethal to E. coli. Cheng B, Annamalai T, Sorokin E, Abrenica M, Aedo S, Tse-Dinh YC, J Mol Biol 2009 385 2 558 567 10.1016/j.jmb.2008.10.073 19013470
11. Bacterial cell killing mediated by topoisomerase I DNA cleavage activity. Cheng B, Shukla S, Vasunilashorn S, Mukhopadhyay S, Tse-Dinh YC, J Biol Chem 2005 280 46 38489 38495 10.1074/jbc.M509722200 16159875 (Pubitemid 43853747)
12. SOS induction by stabilized topoisomerase IA cleavage complex occurs via the RecBCD pathway. Sutherland JH, Cheng B, Liu IF, Tse-Dinh YC, J Bacteriol 2008 190 9 3399 3403 10.1128/JB.01674-07 18310346 (Pubitemid 351581437)
13. Hydroxyl radicals are involved in cell killing by the bacterial topoisomerase I cleavage complex. Liu IF, Annamalai T, Sutherland JH, Tse-Dinh YC, J Bacteriol 2009 191 16 5315 5319 10.1128/JB.00559-09 19525344
14. Escherichia coli Transcriptome Dynamics during the Transition from Anaerobic to Aerobic Conditions. Partridge JD, Scott C, Tang Y, Poole RK, Green J, J Biol Chem 2006 281 38 11230 11237
15. Transition of Escherichia coli from Aerobic to Micro-aerobic Conditions Involves Fast and Slow Reacting Regulatory Components. Partridge JD, Sanguinetti G, Dibden DP, Roberts RE, Poole RK, Green J, J Biol Chem 2007 282 15 11230 11237 10.1074/jbc.M700728200 17307737 (Pubitemid 47100741)
16. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR, J Bacteriol 2005 187 3 1135 1160 10.1128/JB.187.3.1135-1160.2005 15659690 (Pubitemid 40189786)
17. Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. Salmon K, Hung SP, Mekjian K, Baldi P, Hatfield GW, Gunsalus RP, J Biol Chem 2003 278 32 29837 29855 10.1074/jbc.M213060200 12754220 (Pubitemid 36962372)
18. DNA target sequence and FNR-dependent gene expression. Scott C, Partridge JD, Stephenson JR, Green J, FEBS Lett 2003 541 1-3 97 101 10.1016/S0014- 5793(03)00312-0 12706827 (Pubitemid 36428925)
19. Transcription factor distribution in Escherichia coli: studies with FNR protein. Grainger DC, Aiba H, Hurd D, Browning DF, Busby SJ, Nucleic Acids Res 2007 35 1 269 278 17164287 (Pubitemid 46189851)
20. Molecular genetic analysis of FNR-dependent promoters. Eiglmeier K, Honore N, Iuchi S, Lin EC, Cole ST, Mol Microbiol 1989 3 7 869 878 10.1111/j.1365-2958.1989.tb00236.x 2677602 (Pubitemid 19214076)
21. Genes of the Escherichia coli pur regulon are negatively controlled by a repressor-operator interaction. He B, Shiau A, Choi KY, Zalkin H, Smith JM, J Bacteriol 1990 172 8 4555 4562 2198266 (Pubitemid 20236752)
22. FNR and its role in oxygen-regulated gene expression in Escherichia coli. Spiro S, Guest JR, FEMS Microbiol Rev 1990 6 4 399 428 2248796 (Pubitemid 20281613)
23. Role of the purine repressor in the regulation of pyrimidine gene expression in Escherichia coli K-12. Wilson HR, Turnbough CL Jr, J Bacteriol 1990 172 6 3208 3213 1971621 (Pubitemid 20179774)
24. The PurR regulon in Escherichia coli K-12 MG1655. Cho BK, Federowicz SA, Embree M, Park YS, Kim D, Palsson BO, Nucleic Acids Res 2011
25. Role of reactive oxygen species in antibiotic action and resistance. Dwyer DJ, Kohanski MA, Collins JJ, Curr Opin Microbiol 2009 12 5 482 489 10.1016/j.mib.2009.06.018 19647477
26. Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli. Boysen A, Moller-Jensen J, Kallipolitis B, Valentin-Hansen P, Overgaard M, J Biol Chem 2010 285 14 10690 10702 10.1074/jbc.M109.089755 20075074
27. Reprogramming of anaerobic metabolism by the FnrS small RNA. Durand S, Storz G, Mol Microbiol 2010 75 5 1215 1231 10.1111/j.1365-2958.2010.07044.x 20070527
28. Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster. Kiley PJ, Beinert H, FEMS Microbiol Rev 1998 22 5 341 352 10.1111/j.1574-6976.1998.tb00375.x 9990723 (Pubitemid 29074341)
29. Effect of anaerobic growth on quinolone lethality with Escherichia coli. Malik M, Hussain S, Drlica K, Antimicrob Agents Chemother 2007 51 1 28 34 10.1128/AAC.00739-06 17043118 (Pubitemid 46047683)
30. Regulation of acetyl coenzyme A synthetase in Escherichia coli. Kumari S, Beatty CM, Browning DF, Busby SJ, Simel EJ, Hovel-Miner G, Wolfe AJ, J Bacteriol 2000 182 15 4173 4179 10.1128/JB.182.15.4173-4179.2000 10894724 (Pubitemid 30463779)
31. DNA looping and unlooping by AraC protein. Lobell RB, Schleif RF, Science 1990 250 4980 528 532 10.1126/science.2237403 2237403 (Pubitemid 120031777)
32. Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter. Khlebnikov A, Datsenko KA, Skaug T, Wanner BL, Keasling JD, Microbiology 2001 147 Pt 12 3241 3247 11739756 (Pubitemid 33150330)
33. Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. Aravind L, Leipe DD, Koonin EV, Nucleic Acids Res 1998 26 18 4205 4213 10.1093/nar/26.18.4205 9722641 (Pubitemid 28418379)
34. Systematic mutagenesis of the Escherichia coli genome. Kang Y, Durfee T, Glasner JD, Qiu Y, Frisch D, Winterberg KM, Blattner FR, J Bacteriol 2004 186 15 4921 4930 10.1128/JB.186.15.4921-4930.2004 15262929 (Pubitemid 38970819)
35. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H, Mol Syst Biol 2006 2 2006.0008