메뉴 건너뛰기




Volumn 385, Issue 2, 2009, Pages 558-567

Asp-to-Asn Substitution at the First Position of the DxD TOPRIM Motif of Recombinant Bacterial Topoisomerase I Is Extremely Lethal to E. coli

Author keywords

bactericidal; DNA cleavage; DNA religation; topoisomerase; TOPRIM

Indexed keywords

ARABINOSE; ASPARAGINE; ASPARTIC ACID; BACTERIAL ENZYME; DNA TOPOISOMERASE; GLUCOSE; PROTEIN BAD;

EID: 58149083577     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.10.073     Document Type: Article
Times cited : (32)

References (28)
  • 1
    • 33749658088 scopus 로고    scopus 로고
    • Topoisomerase enzymes as therapeutic targets for cancer chemotherapy
    • Giles G.I., and Sharma R.P. Topoisomerase enzymes as therapeutic targets for cancer chemotherapy. Med. Chem. 1 (2005) 383-394
    • (2005) Med. Chem. , vol.1 , pp. 383-394
    • Giles, G.I.1    Sharma, R.P.2
  • 2
    • 0036781733 scopus 로고    scopus 로고
    • DNA topoisomerases in cancer chemotherapy: using enzymes to generate selective DNA damage
    • Nitiss J.L. DNA topoisomerases in cancer chemotherapy: using enzymes to generate selective DNA damage. Curr. Opin. Invest. Drugs 3 (2002) 1512-1516
    • (2002) Curr. Opin. Invest. Drugs , vol.3 , pp. 1512-1516
    • Nitiss, J.L.1
  • 3
    • 0038121041 scopus 로고    scopus 로고
    • Fluoroquinolones: action and resistance
    • Drlica K., and Malik M. Fluoroquinolones: action and resistance. Curr. Top. Med. Chem. 3 (2003) 249-282
    • (2003) Curr. Top. Med. Chem. , vol.3 , pp. 249-282
    • Drlica, K.1    Malik, M.2
  • 4
    • 33947701471 scopus 로고    scopus 로고
    • Exploring DNA topoisomerases as targets of novel therapeutic agents in the treatment of infectious diseases
    • Tse-Dinh Y.C. Exploring DNA topoisomerases as targets of novel therapeutic agents in the treatment of infectious diseases. Infect. Disord. Drug Targets 7 (2007) 3-9
    • (2007) Infect. Disord. Drug Targets , vol.7 , pp. 3-9
    • Tse-Dinh, Y.C.1
  • 5
    • 33644681603 scopus 로고    scopus 로고
    • Bacterial cell killing mediated by topoisomerase I DNA cleavage activity
    • 10.1074/jbc.M509722200 M509722200 [pii]
    • Cheng B., Shukla S., Vasunilashorn S., Mukhopadhyay S., and Tse-Dinh Y.C. Bacterial cell killing mediated by topoisomerase I DNA cleavage activity. J. Biol. Chem. 280 (2005) 38489-38495 10.1074/jbc.M509722200 M509722200 [pii]
    • (2005) J. Biol. Chem. , vol.280 , pp. 38489-38495
    • Cheng, B.1    Shukla, S.2    Vasunilashorn, S.3    Mukhopadhyay, S.4    Tse-Dinh, Y.C.5
  • 6
    • 0032530488 scopus 로고    scopus 로고
    • Toprim-a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
    • Aravind L., Leipe D.D., and Koonin E.V. Toprim-a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. Nucleic Acids Res. 26 (1998) 4205-4213
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4205-4213
    • Aravind, L.1    Leipe, D.D.2    Koonin, E.V.3
  • 7
    • 0034008773 scopus 로고    scopus 로고
    • The acidic triad conserved in type IA DNA topoisomerases is required for binding of Mg(II) and subsequent conformational change
    • Zhu C.X., and Tse-Dinh Y.C. The acidic triad conserved in type IA DNA topoisomerases is required for binding of Mg(II) and subsequent conformational change. J. Biol. Chem. 275 (2000) 5318-5322
    • (2000) J. Biol. Chem. , vol.275 , pp. 5318-5322
    • Zhu, C.X.1    Tse-Dinh, Y.C.2
  • 8
    • 42549102784 scopus 로고    scopus 로고
    • SOS induction by stabilized topoisomerase IA cleavage complex occurs via the RecBCD pathway
    • 10.1128/JB.01674-07
    • Sutherland J.H., Cheng B., Liu I.F., and Tse-Dinh Y.C. SOS induction by stabilized topoisomerase IA cleavage complex occurs via the RecBCD pathway. J. Bacteriol. 190 (2008) 3399-3403 10.1128/JB.01674-07
    • (2008) J. Bacteriol. , vol.190 , pp. 3399-3403
    • Sutherland, J.H.1    Cheng, B.2    Liu, I.F.3    Tse-Dinh, Y.C.4
  • 9
    • 0026333906 scopus 로고
    • Zinc (II) coordination in Escherichia coli DNA topoisomerase I is required for cleavable complex formation with DNA
    • Tse-Dinh Y.C. Zinc (II) coordination in Escherichia coli DNA topoisomerase I is required for cleavable complex formation with DNA. J. Biol. Chem. 266 (1991) 14317-14320
    • (1991) J. Biol. Chem. , vol.266 , pp. 14317-14320
    • Tse-Dinh, Y.C.1
  • 10
    • 33644800903 scopus 로고    scopus 로고
    • High-throughput cloning for proteomics research
    • Doyle S.A. High-throughput cloning for proteomics research. Methods Mol. Biol. 310 (2005) 107-113
    • (2005) Methods Mol. Biol. , vol.310 , pp. 107-113
    • Doyle, S.A.1
  • 12
    • 0032569735 scopus 로고    scopus 로고
    • pBRINT-Ts: a plasmid family with a temperature-sensitive replicon, designed for chromosomal integration into the lacZ gene of Escherichia coli
    • Le Borgne S., Palmeros B., Valle F., Bolivar F., and Gosset G. pBRINT-Ts: a plasmid family with a temperature-sensitive replicon, designed for chromosomal integration into the lacZ gene of Escherichia coli. Gene 223 (1998) 213-219
    • (1998) Gene , vol.223 , pp. 213-219
    • Le Borgne, S.1    Palmeros, B.2    Valle, F.3    Bolivar, F.4    Gosset, G.5
  • 13
    • 0026641630 scopus 로고
    • Conditional growth of Escherichia coli caused by expression of vaccinia virus DNA topoisomerase I
    • Fernandez-Beros M.E., and Tse-Dinh Y.C. Conditional growth of Escherichia coli caused by expression of vaccinia virus DNA topoisomerase I. J. Bacteriol. 174 (1992) 7059-7062
    • (1992) J. Bacteriol. , vol.174 , pp. 7059-7062
    • Fernandez-Beros, M.E.1    Tse-Dinh, Y.C.2
  • 14
    • 0035216867 scopus 로고    scopus 로고
    • Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter
    • Khlebnikov A., Datsenko K.A., Skaug T., Wanner B.L., and Keasling J.D. Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter. Microbiology 147 (2001) 3241-3247
    • (2001) Microbiology , vol.147 , pp. 3241-3247
    • Khlebnikov, A.1    Datsenko, K.A.2    Skaug, T.3    Wanner, B.L.4    Keasling, J.D.5
  • 15
    • 0025770051 scopus 로고
    • Mechanistic studies on E. coli topoisomerase I: divalent ion effects
    • Domanico P.L., and Tse-Dinh Y.C. Mechanistic studies on E. coli topoisomerase I: divalent ion effects. J. Inorg. Biochem. 42 (1991) 87-96
    • (1991) J. Inorg. Biochem. , vol.42 , pp. 87-96
    • Domanico, P.L.1    Tse-Dinh, Y.C.2
  • 16
    • 0027179285 scopus 로고
    • Crystallization of a 67 kDa fragment of Escherichia coli DNA topoisomerase I
    • 10.1006/jmbi.1993.1474
    • Lima C.D., Wang J.C., and Mondragon A. Crystallization of a 67 kDa fragment of Escherichia coli DNA topoisomerase I. J. Mol. Biol. 232 (1993) 1213-1216 10.1006/jmbi.1993.1474
    • (1993) J. Mol. Biol. , vol.232 , pp. 1213-1216
    • Lima, C.D.1    Wang, J.C.2    Mondragon, A.3
  • 17
    • 0030960325 scopus 로고    scopus 로고
    • Effect of Mg(II) binding on the structure and activity of Escherichia coli DNA topoisomerase I
    • Zhu C.X., Roche C.J., and Tse-Dinh Y.C. Effect of Mg(II) binding on the structure and activity of Escherichia coli DNA topoisomerase I. J. Biol. Chem. 272 (1997) 16206-16210
    • (1997) J. Biol. Chem. , vol.272 , pp. 16206-16210
    • Zhu, C.X.1    Roche, C.J.2    Tse-Dinh, Y.C.3
  • 18
    • 39449084697 scopus 로고    scopus 로고
    • Mutation adjacent to the active site tyrosine can enhance DNA cleavage and cell killing by the TOPRIM Gly to Ser mutant of bacterial topoisomerase I
    • 10.1093/nar/gkm1126
    • Cheng B., Sorokin E.P., and Tse-Dinh Y.C. Mutation adjacent to the active site tyrosine can enhance DNA cleavage and cell killing by the TOPRIM Gly to Ser mutant of bacterial topoisomerase I. Nucleic Acids Res. 36 (2008) 1017-1025 10.1093/nar/gkm1126
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1017-1025
    • Cheng, B.1    Sorokin, E.P.2    Tse-Dinh, Y.C.3
  • 19
    • 0022971385 scopus 로고
    • Uncoupling of the DNA breaking and rejoining steps of Escherichia coli type I DNA topoisomerase. Demonstration of an active covalent protein-DNA complex
    • Tse-Dinh Y.C. Uncoupling of the DNA breaking and rejoining steps of Escherichia coli type I DNA topoisomerase. Demonstration of an active covalent protein-DNA complex. J. Biol. Chem. 261 (1986) 10931-10935
    • (1986) J. Biol. Chem. , vol.261 , pp. 10931-10935
    • Tse-Dinh, Y.C.1
  • 20
    • 34247481823 scopus 로고    scopus 로고
    • Type IA topoisomerases: a simple puzzle?
    • 10.1016/j.biochi.2006.10.013
    • Viard T., and de la Tour C.B. Type IA topoisomerases: a simple puzzle?. Biochimie 89 (2007) 456-467 10.1016/j.biochi.2006.10.013
    • (2007) Biochimie , vol.89 , pp. 456-467
    • Viard, T.1    de la Tour, C.B.2
  • 21
    • 49249107295 scopus 로고    scopus 로고
    • Inhibition of Mg2+ binding and DNA religation by bacterial topoisomerase I via introduction of an additional positive charge into the active site region
    • Sorokin E.P., Cheng B., Rathi S., Aedo S.J., Abrenica M.V., and Tse-Dinh Y.C. Inhibition of Mg2+ binding and DNA religation by bacterial topoisomerase I via introduction of an additional positive charge into the active site region. Nucleic Acids Res. 36 (2008) 4788-4796
    • (2008) Nucleic Acids Res. , vol.36 , pp. 4788-4796
    • Sorokin, E.P.1    Cheng, B.2    Rathi, S.3    Aedo, S.J.4    Abrenica, M.V.5    Tse-Dinh, Y.C.6
  • 22
    • 0024818386 scopus 로고
    • The carboxyl terminal domain of Escherichia coli DNA topoisomerase I confers higher affinity to DNA
    • 10.1002/prot.340060307
    • Beran-Steed R.K., and Tse-Dinh Y.C. The carboxyl terminal domain of Escherichia coli DNA topoisomerase I confers higher affinity to DNA. Proteins 6 (1989) 249-258 10.1002/prot.340060307
    • (1989) Proteins , vol.6 , pp. 249-258
    • Beran-Steed, R.K.1    Tse-Dinh, Y.C.2
  • 23
    • 0042733395 scopus 로고    scopus 로고
    • Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I
    • 10.1074/jbc.M303403200 M303403200 [pii]
    • Cheng B., Zhu C.X., Ji C., Ahumada A., and Tse-Dinh Y.C. Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I. J. Biol. Chem. 278 (2003) 30705-30710 10.1074/jbc.M303403200 M303403200 [pii]
    • (2003) J. Biol. Chem. , vol.278 , pp. 30705-30710
    • Cheng, B.1    Zhu, C.X.2    Ji, C.3    Ahumada, A.4    Tse-Dinh, Y.C.5
  • 24
    • 0242710959 scopus 로고    scopus 로고
    • Structure of a complex between E. coli DNA topoisomerase I and single-stranded DNA
    • Perry K., and Mondragon A. Structure of a complex between E. coli DNA topoisomerase I and single-stranded DNA. Structure 11 (2003) 1349-1358
    • (2003) Structure , vol.11 , pp. 1349-1358
    • Perry, K.1    Mondragon, A.2
  • 25
    • 0036304446 scopus 로고    scopus 로고
    • The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: a proposed two metal-ion mechanism
    • 10.1016/S0022-2836(02)00049-9
    • Noble C.G., and Maxwell A. The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: a proposed two metal-ion mechanism. J. Mol. Biol. 318 (2002) 361-371 10.1016/S0022-2836(02)00049-9
    • (2002) J. Mol. Biol. , vol.318 , pp. 361-371
    • Noble, C.G.1    Maxwell, A.2
  • 26
    • 0017844753 scopus 로고
    • Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein
    • Depew R.E., Liu L.F., and Wang J.C. Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein. J. Biol. Chem. 253 (1978) 511-518
    • (1978) J. Biol. Chem. , vol.253 , pp. 511-518
    • Depew, R.E.1    Liu, L.F.2    Wang, J.C.3
  • 27
    • 0025830670 scopus 로고
    • SOS induction as an in vivo assay of enzyme-DNA interactions
    • Heitman J., and Model P. SOS induction as an in vivo assay of enzyme-DNA interactions. Gene 103 (1991) 1-9
    • (1991) Gene , vol.103 , pp. 1-9
    • Heitman, J.1    Model, P.2
  • 28
    • 4544384634 scopus 로고    scopus 로고
    • Site-directed mutagenesis of residues involved in G strand DNA binding by Escherichia coli DNA topoisomerase I
    • 10.1074/jbc.M405891200
    • Cheng B., Feng J., Mulay V., Gadgil S., and Tse-Dinh Y.C. Site-directed mutagenesis of residues involved in G strand DNA binding by Escherichia coli DNA topoisomerase I. J. Biol. Chem. 279 (2004) 39207-39213 10.1074/jbc.M405891200
    • (2004) J. Biol. Chem. , vol.279 , pp. 39207-39213
    • Cheng, B.1    Feng, J.2    Mulay, V.3    Gadgil, S.4    Tse-Dinh, Y.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.