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Volumn 15, Issue 6, 2011, Pages 806-812

Imaging of RNA in live cells

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; FLUORESCENT DYE; HYBRID PROTEIN; PEPTIDE NUCLEIC ACID; PROTEIN MS2; RNA; UNCLASSIFIED DRUG; GREEN FLUORESCENT PROTEIN; RNA BINDING PROTEIN;

EID: 83055184268     PISSN: 13675931     EISSN: 18790402     Source Type: Journal    
DOI: 10.1016/j.cbpa.2011.10.006     Document Type: Review
Times cited : (78)

References (46)
  • 1
    • 77953658619 scopus 로고    scopus 로고
    • Molecular beacons and related probes for intracellular RNA imaging
    • Santangelo P.J. Molecular beacons and related probes for intracellular RNA imaging. WIREs: Nanomed Nanobiotechnol 2010, 2:11-19.
    • (2010) WIREs: Nanomed Nanobiotechnol , vol.2 , pp. 11-19
    • Santangelo, P.J.1
  • 2
    • 77949316240 scopus 로고    scopus 로고
    • Application of aptamers and autofluorescent proteins for RNA visualization
    • Schifferer M., Griesbeck O. Application of aptamers and autofluorescent proteins for RNA visualization. Integr Biol 2009, 1:499-505.
    • (2009) Integr Biol , vol.1 , pp. 499-505
    • Schifferer, M.1    Griesbeck, O.2
  • 3
    • 65449131152 scopus 로고    scopus 로고
    • Imaging intracellular RNA distribution and dynamics in living cells
    • Tyagi S. Imaging intracellular RNA distribution and dynamics in living cells. Nat Methods 2009, 6:331-338.
    • (2009) Nat Methods , vol.6 , pp. 331-338
    • Tyagi, S.1
  • 4
    • 33645798851 scopus 로고    scopus 로고
    • The fluorescent toolbox for assessing protein location and function
    • Giepmans B.N.G., Adams S.R., Ellisman M.H., Tsien R.Y. The fluorescent toolbox for assessing protein location and function. Science 2006, 312:217-224.
    • (2006) Science , vol.312 , pp. 217-224
    • Giepmans, B.N.G.1    Adams, S.R.2    Ellisman, M.H.3    Tsien, R.Y.4
  • 6
    • 0024264659 scopus 로고
    • Ribonucleoprotein complexes of R17 coat protein and a translational operator analog
    • Beckett D., Uhlenbeck O. Ribonucleoprotein complexes of R17 coat protein and a translational operator analog. J Mol Biol 1988, 204:927-938.
    • (1988) J Mol Biol , vol.204 , pp. 927-938
    • Beckett, D.1    Uhlenbeck, O.2
  • 8
    • 34547637607 scopus 로고    scopus 로고
    • λN-GFP: an RNA reporter system for live-cell imaging
    • Daigle N., Ellenberg J. λN-GFP: an RNA reporter system for live-cell imaging. Nat Methods 2007, 4:633-636.
    • (2007) Nat Methods , vol.4 , pp. 633-636
    • Daigle, N.1    Ellenberg, J.2
  • 9
    • 34250210525 scopus 로고    scopus 로고
    • Imaging dynamics of endogenous mitochondrial RNA in single living cells
    • Ozawa T., Natori Y., Sato M., Umezawa Y. Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 2007, 4:413-419.
    • (2007) Nat Methods , vol.4 , pp. 413-419
    • Ozawa, T.1    Natori, Y.2    Sato, M.3    Umezawa, Y.4
  • 10
  • 13
    • 0344430112 scopus 로고    scopus 로고
    • Aptamers switch on fluorescence of triphenylmethane dyes
    • Babendure J.R., Adams S.R., Tsien R.Y. Aptamers switch on fluorescence of triphenylmethane dyes. J Am Chem Soc 2003, 125:14716-14717.
    • (2003) J Am Chem Soc , vol.125 , pp. 14716-14717
    • Babendure, J.R.1    Adams, S.R.2    Tsien, R.Y.3
  • 15
    • 50249150245 scopus 로고    scopus 로고
    • Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA
    • Sando S., Narita A., Hayami M., Aoyama Y. Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA. Chem Commun 2008, 3858-3860.
    • (2008) Chem Commun , pp. 3858-3860
    • Sando, S.1    Narita, A.2    Hayami, M.3    Aoyama, Y.4
  • 16
    • 34247523672 scopus 로고    scopus 로고
    • Fluorescent sensors for specific RNA: a general paradigm using chemistry and combinatorial biology
    • Sparano B.A., Koide K. Fluorescent sensors for specific RNA: a general paradigm using chemistry and combinatorial biology. J Am Chem Soc 2007, 129:4785-4794.
    • (2007) J Am Chem Soc , vol.129 , pp. 4785-4794
    • Sparano, B.A.1    Koide, K.2
  • 17
    • 35148840942 scopus 로고    scopus 로고
    • Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy
    • Famulok M., Hartig J.S., Mayer G. Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem Rev 2007, 107:3715-3743.
    • (2007) Chem Rev , vol.107 , pp. 3715-3743
    • Famulok, M.1    Hartig, J.S.2    Mayer, G.3
  • 18
    • 79960959180 scopus 로고    scopus 로고
    • RNA mimics of green fluorescent protein
    • Paige J.S., Wu K.Y., Jaffrey S.R. RNA mimics of green fluorescent protein. Science 2011, 333:642-646.
    • (2011) Science , vol.333 , pp. 642-646
    • Paige, J.S.1    Wu, K.Y.2    Jaffrey, S.R.3
  • 22
    • 77949838467 scopus 로고    scopus 로고
    • Single molecule sensitive multivalent polyethylene glycol probes for RNA imaging
    • Lifland A.W., Zurla C., Santangelo P.J. Single molecule sensitive multivalent polyethylene glycol probes for RNA imaging. Bioconjug Chem 2010, 21:483-488.
    • (2010) Bioconjug Chem , vol.21 , pp. 483-488
    • Lifland, A.W.1    Zurla, C.2    Santangelo, P.J.3
  • 24
    • 0032473890 scopus 로고    scopus 로고
    • LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine. thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition
    • Koshkin A.A., Singh S.K., Nielsen P., Rajwanshi V.K., Kumar R., Meldgaard M., Olsen C.E., Wengel J. LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine. thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition. Tetrahedron 1998, 54:3607-3630.
    • (1998) Tetrahedron , vol.54 , pp. 3607-3630
    • Koshkin, A.A.1    Singh, S.K.2    Nielsen, P.3    Rajwanshi, V.K.4    Kumar, R.5    Meldgaard, M.6    Olsen, C.E.7    Wengel, J.8
  • 25
    • 0026341239 scopus 로고
    • Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide
    • Nielsen P.E., Egholm M., Berg R.H., Buchardt O. Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science 1991, 254:1498-1500.
    • (1991) Science , vol.254 , pp. 1498-1500
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 27
    • 67349155946 scopus 로고    scopus 로고
    • LNA Flow-FISH: a flow cytometry-fluorescence in situ hybridization method to detect messenger RNA using locked nucleic acid probes
    • Robertson K.L., Thach D.C. LNA Flow-FISH: a flow cytometry-fluorescence in situ hybridization method to detect messenger RNA using locked nucleic acid probes. Anal Biochem 2009, 390:109-114.
    • (2009) Anal Biochem , vol.390 , pp. 109-114
    • Robertson, K.L.1    Thach, D.C.2
  • 28
    • 69049086730 scopus 로고    scopus 로고
    • Imaging individual microRNAs in single mammalian cells in situ
    • Liu J., Tsourkas A. Imaging individual microRNAs in single mammalian cells in situ. Nucleic Acids Res 2009, 37:e100.
    • (2009) Nucleic Acids Res , vol.37
    • Liu, J.1    Tsourkas, A.2
  • 29
    • 52949113455 scopus 로고    scopus 로고
    • Peptide nucleic acids (PNAs) as diagnostic devices for genetic and cytogenetic analysis
    • Pellestor F.C., Paulasova P., Hamamah S. Peptide nucleic acids (PNAs) as diagnostic devices for genetic and cytogenetic analysis. Curr Pharm Des 2008, 14:2439-2444.
    • (2008) Curr Pharm Des , vol.14 , pp. 2439-2444
    • Pellestor, F.C.1    Paulasova, P.2    Hamamah, S.3
  • 30
    • 33746904737 scopus 로고    scopus 로고
    • A simple γ-backbone modification preorganizes peptide nucleic acid into a helical structure
    • Dragulescu-Andrasi A., Rapireddy S., Frezza B.M., Gayathri C., Gil R.R., Ly D.H. A simple γ-backbone modification preorganizes peptide nucleic acid into a helical structure. J Am Chem Soc 2006, 128:10258-10267.
    • (2006) J Am Chem Soc , vol.128 , pp. 10258-10267
    • Dragulescu-Andrasi, A.1    Rapireddy, S.2    Frezza, B.M.3    Gayathri, C.4    Gil, R.R.5    Ly, D.H.6
  • 31
    • 64349120434 scopus 로고    scopus 로고
    • Synthesis of conformationally preorganized and cell-permeable guanidine-based γ-peptide nucleic acids (γGPNAs)
    • Sahu B., Chenna V., Lathrop K.L., Thomas S.M., Zon G.J.L.K., Ly D.H. Synthesis of conformationally preorganized and cell-permeable guanidine-based γ-peptide nucleic acids (γGPNAs). J Org Chem 2009, 74:1509-1516.
    • (2009) J Org Chem , vol.74 , pp. 1509-1516
    • Sahu, B.1    Chenna, V.2    Lathrop, K.L.3    Thomas, S.M.4    Zon, G.J.L.K.5    Ly, D.H.6
  • 32
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: probes that fluoresce upon hybridization
    • Tyagi S., Kramer F.R. Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol 1996, 14:303-308.
    • (1996) Nat Biotechnol , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 33
    • 34548724424 scopus 로고    scopus 로고
    • Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells
    • Chen A.K., Behlke M.A., Tsourkas A. Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells. Nucleic Acids Res 2007, 35:e105.
    • (2007) Nucleic Acids Res , vol.35
    • Chen, A.K.1    Behlke, M.A.2    Tsourkas, A.3
  • 34
    • 79952348397 scopus 로고    scopus 로고
    • Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells
    • Okabe K., Harada Y., Zhang J., Tadakuma H., Tani T., Funatsu T. Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells. Nucleic Acids Res 2011, 39:e20.
    • (2011) Nucleic Acids Res , vol.39
    • Okabe, K.1    Harada, Y.2    Zhang, J.3    Tadakuma, H.4    Tani, T.5    Funatsu, T.6
  • 35
    • 73949159432 scopus 로고    scopus 로고
    • Live FISH: imaging mRNA in living neurons
    • Simon B., Sandhu M., Myhr K.L. Live FISH: imaging mRNA in living neurons. J Neurosci Res 2010, 88:55-63.
    • (2010) J Neurosci Res , vol.88 , pp. 55-63
    • Simon, B.1    Sandhu, M.2    Myhr, K.L.3
  • 36
    • 77955788881 scopus 로고    scopus 로고
    • Ratiometric bimolecular beacons for the sensitive detection of RNA in living cells
    • Chen A.K., Davydenko O., Behlke M.A., Tsourkas A. Ratiometric bimolecular beacons for the sensitive detection of RNA in living cells. Nucleic Acids Res 2010, 38:e148.
    • (2010) Nucleic Acids Res , vol.38
    • Chen, A.K.1    Davydenko, O.2    Behlke, M.A.3    Tsourkas, A.4
  • 37
    • 31044444366 scopus 로고    scopus 로고
    • Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes
    • Abe H., Kool E.T. Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes. Proc Natl Acad Sci USA 2006, 103:263-268.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 263-268
    • Abe, H.1    Kool, E.T.2
  • 38
    • 70149090352 scopus 로고    scopus 로고
    • Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probes
    • Pianowski Z., Gorska K., Oswald L., Merten C.A., Winssinger N. Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probes. J Am Chem Soc 2009, 131:6492-6497.
    • (2009) J Am Chem Soc , vol.131 , pp. 6492-6497
    • Pianowski, Z.1    Gorska, K.2    Oswald, L.3    Merten, C.A.4    Winssinger, N.5
  • 39
    • 66149188263 scopus 로고    scopus 로고
    • Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells
    • Furukawa K., Abe H., Hibino K., Sako Y., Tsuneda S., Ito Y. Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells. Bioconjug Chem 2009, 20:1026-1036.
    • (2009) Bioconjug Chem , vol.20 , pp. 1026-1036
    • Furukawa, K.1    Abe, H.2    Hibino, K.3    Sako, Y.4    Tsuneda, S.5    Ito, Y.6
  • 40
    • 12344280276 scopus 로고    scopus 로고
    • Forced intercalation probes (FIT probes): thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide-polymorphism detection
    • Köhler O., Jarikote D.V., Seitz O. Forced intercalation probes (FIT probes): thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide-polymorphism detection. ChemBioChem 2005, 6:69-77.
    • (2005) ChemBioChem , vol.6 , pp. 69-77
    • Köhler, O.1    Jarikote, D.V.2    Seitz, O.3
  • 41
    • 79951806917 scopus 로고    scopus 로고
    • Fluorescence imaging of influenza H1N1 mRNA in living infected cells using single-chromophore FIT-PNAs
    • Kummer S., Knoll A., Socher E., Bethge L., Herrmann A., Seitz O. Fluorescence imaging of influenza H1N1 mRNA in living infected cells using single-chromophore FIT-PNAs. Angew Chem Int Ed 2011, 50:1931-1934.
    • (2011) Angew Chem Int Ed , vol.50 , pp. 1931-1934
    • Kummer, S.1    Knoll, A.2    Socher, E.3    Bethge, L.4    Herrmann, A.5    Seitz, O.6
  • 42
    • 77958552723 scopus 로고    scopus 로고
    • Sets of RNA repeated tags and hybridization-sensitive fluorescent probes for distinct images of RNA in a living cell
    • Kubota T., Ikeda S., Yanagisawa H., Yuki M., Okamoto A. Sets of RNA repeated tags and hybridization-sensitive fluorescent probes for distinct images of RNA in a living cell. PLoS One 2010, 5:e13003.
    • (2010) PLoS One , vol.5
    • Kubota, T.1    Ikeda, S.2    Yanagisawa, H.3    Yuki, M.4    Okamoto, A.5
  • 43
    • 33847299485 scopus 로고    scopus 로고
    • Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates
    • Benvin A.L., Creeger Y., Fisher G.W., Ballou B., Waggoner A.S., Armitage B.A. Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates. J Am Chem Soc 2007, 129:2025-2034.
    • (2007) J Am Chem Soc , vol.129 , pp. 2025-2034
    • Benvin, A.L.1    Creeger, Y.2    Fisher, G.W.3    Ballou, B.4    Waggoner, A.S.5    Armitage, B.A.6
  • 44
    • 63449107981 scopus 로고    scopus 로고
    • Fluorescent DNA nanotags based on a self-assembled DNA tetrahedron
    • Özhalici-Ünal H., Armitage B.A. Fluorescent DNA nanotags based on a self-assembled DNA tetrahedron. ACS Nano 2009, 3:425-433.
    • (2009) ACS Nano , vol.3 , pp. 425-433
    • Özhalici-Ünal, H.1    Armitage, B.A.2
  • 45
    • 67849104948 scopus 로고    scopus 로고
    • Polyfluorophores on a DNA backbone: a multicolor set of labels excited at one wavelength
    • Teo Y.N., Wilson J.N., Kool E.T. Polyfluorophores on a DNA backbone: a multicolor set of labels excited at one wavelength. J Am Chem Soc 2009, 131:3923-3933.
    • (2009) J Am Chem Soc , vol.131 , pp. 3923-3933
    • Teo, Y.N.1    Wilson, J.N.2    Kool, E.T.3
  • 46
    • 0035230771 scopus 로고    scopus 로고
    • Using oligonucleotide scanning arrays to find effective antisense reagents
    • Sohail M., Southern E.M. Using oligonucleotide scanning arrays to find effective antisense reagents. Methods Mol Biol 2001, 170:181-199.
    • (2001) Methods Mol Biol , vol.170 , pp. 181-199
    • Sohail, M.1    Southern, E.M.2


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