-
1
-
-
77953658619
-
Molecular beacons and related probes for intracellular RNA imaging
-
Santangelo P.J. Molecular beacons and related probes for intracellular RNA imaging. WIREs: Nanomed Nanobiotechnol 2010, 2:11-19.
-
(2010)
WIREs: Nanomed Nanobiotechnol
, vol.2
, pp. 11-19
-
-
Santangelo, P.J.1
-
2
-
-
77949316240
-
Application of aptamers and autofluorescent proteins for RNA visualization
-
Schifferer M., Griesbeck O. Application of aptamers and autofluorescent proteins for RNA visualization. Integr Biol 2009, 1:499-505.
-
(2009)
Integr Biol
, vol.1
, pp. 499-505
-
-
Schifferer, M.1
Griesbeck, O.2
-
3
-
-
65449131152
-
Imaging intracellular RNA distribution and dynamics in living cells
-
Tyagi S. Imaging intracellular RNA distribution and dynamics in living cells. Nat Methods 2009, 6:331-338.
-
(2009)
Nat Methods
, vol.6
, pp. 331-338
-
-
Tyagi, S.1
-
4
-
-
33645798851
-
The fluorescent toolbox for assessing protein location and function
-
Giepmans B.N.G., Adams S.R., Ellisman M.H., Tsien R.Y. The fluorescent toolbox for assessing protein location and function. Science 2006, 312:217-224.
-
(2006)
Science
, vol.312
, pp. 217-224
-
-
Giepmans, B.N.G.1
Adams, S.R.2
Ellisman, M.H.3
Tsien, R.Y.4
-
5
-
-
0032185810
-
Localization of ASH1 mRNA particles in living yeast
-
Bertrand E., Chartrand P., Schaefer M., Shenoy S.M., Singer R.H., Long R.M. Localization of ASH1 mRNA particles in living yeast. Mol Cell 1998, 2:437-445.
-
(1998)
Mol Cell
, vol.2
, pp. 437-445
-
-
Bertrand, E.1
Chartrand, P.2
Schaefer, M.3
Shenoy, S.M.4
Singer, R.H.5
Long, R.M.6
-
6
-
-
0024264659
-
Ribonucleoprotein complexes of R17 coat protein and a translational operator analog
-
Beckett D., Uhlenbeck O. Ribonucleoprotein complexes of R17 coat protein and a translational operator analog. J Mol Biol 1988, 204:927-938.
-
(1988)
J Mol Biol
, vol.204
, pp. 927-938
-
-
Beckett, D.1
Uhlenbeck, O.2
-
7
-
-
0347156907
-
Single mRNA molecules demonstrate probabilistic movement in living mammalian cells
-
Fusco D., Accornero N., Lavoie B., Shenoy S.M., Blanchard J.-M., Singer R.H., Bertrand B. Single mRNA molecules demonstrate probabilistic movement in living mammalian cells. Curr Biol 2003, 13:161-167.
-
(2003)
Curr Biol
, vol.13
, pp. 161-167
-
-
Fusco, D.1
Accornero, N.2
Lavoie, B.3
Shenoy, S.M.4
Blanchard, J.-M.5
Singer, R.H.6
Bertrand, B.7
-
8
-
-
34547637607
-
λN-GFP: an RNA reporter system for live-cell imaging
-
Daigle N., Ellenberg J. λN-GFP: an RNA reporter system for live-cell imaging. Nat Methods 2007, 4:633-636.
-
(2007)
Nat Methods
, vol.4
, pp. 633-636
-
-
Daigle, N.1
Ellenberg, J.2
-
9
-
-
34250210525
-
Imaging dynamics of endogenous mitochondrial RNA in single living cells
-
Ozawa T., Natori Y., Sato M., Umezawa Y. Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 2007, 4:413-419.
-
(2007)
Nat Methods
, vol.4
, pp. 413-419
-
-
Ozawa, T.1
Natori, Y.2
Sato, M.3
Umezawa, Y.4
-
10
-
-
47849121275
-
Simultaneous transport of different localized mRNA species revealed by live-cell imaging
-
Lange S., Katayama Y., Schmid M., Burkacky O., Bräuchle C., Lamb D.C., Jansen R.-P. Simultaneous transport of different localized mRNA species revealed by live-cell imaging. Traffic 2008, 9:1256-1267.
-
(2008)
Traffic
, vol.9
, pp. 1256-1267
-
-
Lange, S.1
Katayama, Y.2
Schmid, M.3
Burkacky, O.4
Bräuchle, C.5
Lamb, D.C.6
Jansen, R.-P.7
-
11
-
-
0034644645
-
Blue-fluorescent antibodies
-
Simeonov A., Matsushita M., Juban E.A., Thompson E.H.Z., Hoffman T.Z., Beuscher A.E., Taylor M.J., Wirsching P., Rettig W., McCusker J.K., et al. Blue-fluorescent antibodies. Science 2000, 290:307-313.
-
(2000)
Science
, vol.290
, pp. 307-313
-
-
Simeonov, A.1
Matsushita, M.2
Juban, E.A.3
Thompson, E.H.Z.4
Hoffman, T.Z.5
Beuscher, A.E.6
Taylor, M.J.7
Wirsching, P.8
Rettig, W.9
McCusker, J.K.10
-
12
-
-
38949155234
-
Fluorogen-activating single-chain antibodies for imaging cell surface proteins
-
Szent-Gyorgyi C., Schmidt B.F., Creeger Y., Fisher G.W., Zakel K.L., Adler S., Fitzpatrick J.A., Woolford C.A., Yan Q., Vasilev K.V., et al. Fluorogen-activating single-chain antibodies for imaging cell surface proteins. Nat Biotechnol 2007, 26:235-240.
-
(2007)
Nat Biotechnol
, vol.26
, pp. 235-240
-
-
Szent-Gyorgyi, C.1
Schmidt, B.F.2
Creeger, Y.3
Fisher, G.W.4
Zakel, K.L.5
Adler, S.6
Fitzpatrick, J.A.7
Woolford, C.A.8
Yan, Q.9
Vasilev, K.V.10
-
13
-
-
0344430112
-
Aptamers switch on fluorescence of triphenylmethane dyes
-
Babendure J.R., Adams S.R., Tsien R.Y. Aptamers switch on fluorescence of triphenylmethane dyes. J Am Chem Soc 2003, 125:14716-14717.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 14716-14717
-
-
Babendure, J.R.1
Adams, S.R.2
Tsien, R.Y.3
-
14
-
-
44449122485
-
Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules
-
Constantin T., Silva G.L., Robertson K.L., Hamilton T.P., Fague K.M., Waggoner A.S., Armitage B.A. Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules. Org Lett 2008, 10:1561-1564.
-
(2008)
Org Lett
, vol.10
, pp. 1561-1564
-
-
Constantin, T.1
Silva, G.L.2
Robertson, K.L.3
Hamilton, T.P.4
Fague, K.M.5
Waggoner, A.S.6
Armitage, B.A.7
-
15
-
-
50249150245
-
Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA
-
Sando S., Narita A., Hayami M., Aoyama Y. Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA. Chem Commun 2008, 3858-3860.
-
(2008)
Chem Commun
, pp. 3858-3860
-
-
Sando, S.1
Narita, A.2
Hayami, M.3
Aoyama, Y.4
-
16
-
-
34247523672
-
Fluorescent sensors for specific RNA: a general paradigm using chemistry and combinatorial biology
-
Sparano B.A., Koide K. Fluorescent sensors for specific RNA: a general paradigm using chemistry and combinatorial biology. J Am Chem Soc 2007, 129:4785-4794.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 4785-4794
-
-
Sparano, B.A.1
Koide, K.2
-
17
-
-
35148840942
-
Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy
-
Famulok M., Hartig J.S., Mayer G. Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem Rev 2007, 107:3715-3743.
-
(2007)
Chem Rev
, vol.107
, pp. 3715-3743
-
-
Famulok, M.1
Hartig, J.S.2
Mayer, G.3
-
18
-
-
79960959180
-
RNA mimics of green fluorescent protein
-
Paige J.S., Wu K.Y., Jaffrey S.R. RNA mimics of green fluorescent protein. Science 2011, 333:642-646.
-
(2011)
Science
, vol.333
, pp. 642-646
-
-
Paige, J.S.1
Wu, K.Y.2
Jaffrey, S.R.3
-
19
-
-
53349161901
-
Imaging individual mRNA molecules using multiple singly labeled probes
-
Raj A., van den Bogaard P., Rifkin S.A., van Oudenaarden A., Tyagi S. Imaging individual mRNA molecules using multiple singly labeled probes. Nat Methods 2008, 5:877-879.
-
(2008)
Nat Methods
, vol.5
, pp. 877-879
-
-
Raj, A.1
van den Bogaard, P.2
Rifkin, S.A.3
van Oudenaarden, A.4
Tyagi, S.5
-
20
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj A., Peskin C.S., Tranchina D., Vargas D.Y., Tyagi S. Stochastic mRNA synthesis in mammalian cells. PLoS Biol 2006, 4:1707-1719.
-
(2006)
PLoS Biol
, vol.4
, pp. 1707-1719
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
21
-
-
67349101852
-
Single molecule-sensitive probes for imaging RNA in live cells
-
Santangelo P.J., Lifland A.W., Curt P., Sasaki Y., Bassell G.J., Lindquist M.E., Crowe J.E.J. Single molecule-sensitive probes for imaging RNA in live cells. Nat Methods 2009, 6:347-349.
-
(2009)
Nat Methods
, vol.6
, pp. 347-349
-
-
Santangelo, P.J.1
Lifland, A.W.2
Curt, P.3
Sasaki, Y.4
Bassell, G.J.5
Lindquist, M.E.6
Crowe, J.E.J.7
-
22
-
-
77949838467
-
Single molecule sensitive multivalent polyethylene glycol probes for RNA imaging
-
Lifland A.W., Zurla C., Santangelo P.J. Single molecule sensitive multivalent polyethylene glycol probes for RNA imaging. Bioconjug Chem 2010, 21:483-488.
-
(2010)
Bioconjug Chem
, vol.21
, pp. 483-488
-
-
Lifland, A.W.1
Zurla, C.2
Santangelo, P.J.3
-
23
-
-
0002726408
-
Linear 2′-O-methyl RNA probes for the visualization of RNA in living cells
-
Molenaar C., Marras S.A., Slats J.C.M., Truffert J.-C., Lemaitre M., Raap A.K., Dirks R.W., Tanke H.J. Linear 2′-O-methyl RNA probes for the visualization of RNA in living cells. Nucleic Acids Res 2001, 29:e89.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Molenaar, C.1
Marras, S.A.2
Slats, J.C.M.3
Truffert, J.-C.4
Lemaitre, M.5
Raap, A.K.6
Dirks, R.W.7
Tanke, H.J.8
-
24
-
-
0032473890
-
LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine. thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition
-
Koshkin A.A., Singh S.K., Nielsen P., Rajwanshi V.K., Kumar R., Meldgaard M., Olsen C.E., Wengel J. LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine. thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition. Tetrahedron 1998, 54:3607-3630.
-
(1998)
Tetrahedron
, vol.54
, pp. 3607-3630
-
-
Koshkin, A.A.1
Singh, S.K.2
Nielsen, P.3
Rajwanshi, V.K.4
Kumar, R.5
Meldgaard, M.6
Olsen, C.E.7
Wengel, J.8
-
25
-
-
0026341239
-
Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide
-
Nielsen P.E., Egholm M., Berg R.H., Buchardt O. Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science 1991, 254:1498-1500.
-
(1991)
Science
, vol.254
, pp. 1498-1500
-
-
Nielsen, P.E.1
Egholm, M.2
Berg, R.H.3
Buchardt, O.4
-
26
-
-
0027364174
-
PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules
-
Egholm M., Buchardt O., Christensen L., Behrens C., Freier S.M., Driver D.A., Berg R.H., Kim S.K., Nordén B., Nielsen P.E. PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules. Nature 1993, 365:566-568.
-
(1993)
Nature
, vol.365
, pp. 566-568
-
-
Egholm, M.1
Buchardt, O.2
Christensen, L.3
Behrens, C.4
Freier, S.M.5
Driver, D.A.6
Berg, R.H.7
Kim, S.K.8
Nordén, B.9
Nielsen, P.E.10
-
27
-
-
67349155946
-
LNA Flow-FISH: a flow cytometry-fluorescence in situ hybridization method to detect messenger RNA using locked nucleic acid probes
-
Robertson K.L., Thach D.C. LNA Flow-FISH: a flow cytometry-fluorescence in situ hybridization method to detect messenger RNA using locked nucleic acid probes. Anal Biochem 2009, 390:109-114.
-
(2009)
Anal Biochem
, vol.390
, pp. 109-114
-
-
Robertson, K.L.1
Thach, D.C.2
-
28
-
-
69049086730
-
Imaging individual microRNAs in single mammalian cells in situ
-
Liu J., Tsourkas A. Imaging individual microRNAs in single mammalian cells in situ. Nucleic Acids Res 2009, 37:e100.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Liu, J.1
Tsourkas, A.2
-
29
-
-
52949113455
-
Peptide nucleic acids (PNAs) as diagnostic devices for genetic and cytogenetic analysis
-
Pellestor F.C., Paulasova P., Hamamah S. Peptide nucleic acids (PNAs) as diagnostic devices for genetic and cytogenetic analysis. Curr Pharm Des 2008, 14:2439-2444.
-
(2008)
Curr Pharm Des
, vol.14
, pp. 2439-2444
-
-
Pellestor, F.C.1
Paulasova, P.2
Hamamah, S.3
-
30
-
-
33746904737
-
A simple γ-backbone modification preorganizes peptide nucleic acid into a helical structure
-
Dragulescu-Andrasi A., Rapireddy S., Frezza B.M., Gayathri C., Gil R.R., Ly D.H. A simple γ-backbone modification preorganizes peptide nucleic acid into a helical structure. J Am Chem Soc 2006, 128:10258-10267.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 10258-10267
-
-
Dragulescu-Andrasi, A.1
Rapireddy, S.2
Frezza, B.M.3
Gayathri, C.4
Gil, R.R.5
Ly, D.H.6
-
31
-
-
64349120434
-
Synthesis of conformationally preorganized and cell-permeable guanidine-based γ-peptide nucleic acids (γGPNAs)
-
Sahu B., Chenna V., Lathrop K.L., Thomas S.M., Zon G.J.L.K., Ly D.H. Synthesis of conformationally preorganized and cell-permeable guanidine-based γ-peptide nucleic acids (γGPNAs). J Org Chem 2009, 74:1509-1516.
-
(2009)
J Org Chem
, vol.74
, pp. 1509-1516
-
-
Sahu, B.1
Chenna, V.2
Lathrop, K.L.3
Thomas, S.M.4
Zon, G.J.L.K.5
Ly, D.H.6
-
32
-
-
0029670262
-
Molecular beacons: probes that fluoresce upon hybridization
-
Tyagi S., Kramer F.R. Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol 1996, 14:303-308.
-
(1996)
Nat Biotechnol
, vol.14
, pp. 303-308
-
-
Tyagi, S.1
Kramer, F.R.2
-
33
-
-
34548724424
-
Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells
-
Chen A.K., Behlke M.A., Tsourkas A. Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells. Nucleic Acids Res 2007, 35:e105.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Chen, A.K.1
Behlke, M.A.2
Tsourkas, A.3
-
34
-
-
79952348397
-
Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells
-
Okabe K., Harada Y., Zhang J., Tadakuma H., Tani T., Funatsu T. Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells. Nucleic Acids Res 2011, 39:e20.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Okabe, K.1
Harada, Y.2
Zhang, J.3
Tadakuma, H.4
Tani, T.5
Funatsu, T.6
-
35
-
-
73949159432
-
Live FISH: imaging mRNA in living neurons
-
Simon B., Sandhu M., Myhr K.L. Live FISH: imaging mRNA in living neurons. J Neurosci Res 2010, 88:55-63.
-
(2010)
J Neurosci Res
, vol.88
, pp. 55-63
-
-
Simon, B.1
Sandhu, M.2
Myhr, K.L.3
-
36
-
-
77955788881
-
Ratiometric bimolecular beacons for the sensitive detection of RNA in living cells
-
Chen A.K., Davydenko O., Behlke M.A., Tsourkas A. Ratiometric bimolecular beacons for the sensitive detection of RNA in living cells. Nucleic Acids Res 2010, 38:e148.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Chen, A.K.1
Davydenko, O.2
Behlke, M.A.3
Tsourkas, A.4
-
37
-
-
31044444366
-
Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes
-
Abe H., Kool E.T. Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes. Proc Natl Acad Sci USA 2006, 103:263-268.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 263-268
-
-
Abe, H.1
Kool, E.T.2
-
38
-
-
70149090352
-
Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probes
-
Pianowski Z., Gorska K., Oswald L., Merten C.A., Winssinger N. Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probes. J Am Chem Soc 2009, 131:6492-6497.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 6492-6497
-
-
Pianowski, Z.1
Gorska, K.2
Oswald, L.3
Merten, C.A.4
Winssinger, N.5
-
39
-
-
66149188263
-
Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells
-
Furukawa K., Abe H., Hibino K., Sako Y., Tsuneda S., Ito Y. Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells. Bioconjug Chem 2009, 20:1026-1036.
-
(2009)
Bioconjug Chem
, vol.20
, pp. 1026-1036
-
-
Furukawa, K.1
Abe, H.2
Hibino, K.3
Sako, Y.4
Tsuneda, S.5
Ito, Y.6
-
40
-
-
12344280276
-
Forced intercalation probes (FIT probes): thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide-polymorphism detection
-
Köhler O., Jarikote D.V., Seitz O. Forced intercalation probes (FIT probes): thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide-polymorphism detection. ChemBioChem 2005, 6:69-77.
-
(2005)
ChemBioChem
, vol.6
, pp. 69-77
-
-
Köhler, O.1
Jarikote, D.V.2
Seitz, O.3
-
41
-
-
79951806917
-
Fluorescence imaging of influenza H1N1 mRNA in living infected cells using single-chromophore FIT-PNAs
-
Kummer S., Knoll A., Socher E., Bethge L., Herrmann A., Seitz O. Fluorescence imaging of influenza H1N1 mRNA in living infected cells using single-chromophore FIT-PNAs. Angew Chem Int Ed 2011, 50:1931-1934.
-
(2011)
Angew Chem Int Ed
, vol.50
, pp. 1931-1934
-
-
Kummer, S.1
Knoll, A.2
Socher, E.3
Bethge, L.4
Herrmann, A.5
Seitz, O.6
-
42
-
-
77958552723
-
Sets of RNA repeated tags and hybridization-sensitive fluorescent probes for distinct images of RNA in a living cell
-
Kubota T., Ikeda S., Yanagisawa H., Yuki M., Okamoto A. Sets of RNA repeated tags and hybridization-sensitive fluorescent probes for distinct images of RNA in a living cell. PLoS One 2010, 5:e13003.
-
(2010)
PLoS One
, vol.5
-
-
Kubota, T.1
Ikeda, S.2
Yanagisawa, H.3
Yuki, M.4
Okamoto, A.5
-
43
-
-
33847299485
-
Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates
-
Benvin A.L., Creeger Y., Fisher G.W., Ballou B., Waggoner A.S., Armitage B.A. Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates. J Am Chem Soc 2007, 129:2025-2034.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 2025-2034
-
-
Benvin, A.L.1
Creeger, Y.2
Fisher, G.W.3
Ballou, B.4
Waggoner, A.S.5
Armitage, B.A.6
-
44
-
-
63449107981
-
Fluorescent DNA nanotags based on a self-assembled DNA tetrahedron
-
Özhalici-Ünal H., Armitage B.A. Fluorescent DNA nanotags based on a self-assembled DNA tetrahedron. ACS Nano 2009, 3:425-433.
-
(2009)
ACS Nano
, vol.3
, pp. 425-433
-
-
Özhalici-Ünal, H.1
Armitage, B.A.2
-
45
-
-
67849104948
-
Polyfluorophores on a DNA backbone: a multicolor set of labels excited at one wavelength
-
Teo Y.N., Wilson J.N., Kool E.T. Polyfluorophores on a DNA backbone: a multicolor set of labels excited at one wavelength. J Am Chem Soc 2009, 131:3923-3933.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 3923-3933
-
-
Teo, Y.N.1
Wilson, J.N.2
Kool, E.T.3
-
46
-
-
0035230771
-
Using oligonucleotide scanning arrays to find effective antisense reagents
-
Sohail M., Southern E.M. Using oligonucleotide scanning arrays to find effective antisense reagents. Methods Mol Biol 2001, 170:181-199.
-
(2001)
Methods Mol Biol
, vol.170
, pp. 181-199
-
-
Sohail, M.1
Southern, E.M.2
|