Identification of the genus epimedium with DNA barcodes

Journal of Medicinal Plant Research

Volumn 5, Issue 28, 2011, Pages 6413-6417

  Jiang, Yu ^a   Ding, Chun Bang ^a   Zhang, Li ^a   Yang, Ruiwu ^a   Zhou, Yonghong ^a   Tang, Li ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

DNA barcode; Epimedium; ITS; matK; psbA trnH; Rbcl

Indexed keywords

PLANT DNA;

ARTICLE; CONTROLLED STUDY; DNA BARCODING; DNA SEQUENCE; EPIMEDIUM; GENE AMPLIFICATION; GENE LOCUS; GENETIC VARIABILITY; GENUS; MOLECULAR EVOLUTION; NONHUMAN; PLANT IDENTIFICATION; PLANT STRUCTURES; POLYMERASE CHAIN REACTION; SPECIES IDENTIFICATION;

EID: 82955236249     PISSN: None     EISSN: 19960875     Source Type: Journal    
DOI: 10.5897/JMPR11.545     Document Type: Article

References (21)

1. Barraclough TG, Savolainen V (2008). DNA barcoding the floras of biodiversity hotspots. Proc. Natl. Acad. Sci. U.S.A., 105: 2923-2928.
2. CBOL Plant Working Group (2009). DNA barcode for land plant. Proc. Natl. Acad. Sci. U.S.A., 106: 12794-12797.
3. Chase MW, Cowan RS, Hollingsworth PM (2007). A proposal for a standardised protocol to barcode all land plants. TAXON, 56: 295-299.
4. Cuénoud P, Savolainen V, Chatrou LW, Powell M, Grayer RJ, Chase M (2002). Molecular Phylegenetic of Caryophyllales based on Nulear 18S r DNA and Plastid rbcL,atpB, and matK DNA Sequences. Am. J. Bot., 89: 132-144.
5. Gonzalez MA, Baraloto CB, Engel J, Mori SA, Pétronelli, Riéra B, Roger A, Thébaud C, Chavel J (2009). Identification of Amazonian Trees with DNA Barcodes. PLOS ONE, 4: e7483.
6. Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull., 19: 11-15.
7. Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, Newmaster SG, Husband BC, Percy DM, Hajibabaei M, Barrett SCH (2008). Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well. PLOS ONE, 3: e2802.
8. Ford CS, Ayres KL, Toomey N, Haider N, van Alphen SJ (2009). Selection of candidate coding DNA barcoding regions for use on land plants. Bot. J. Linn. Soc., 159: 1-11.
9. Hebert PD, Cywinska A, Ball SL (2003). Biological identifications through DNA barcodes. Proc. R. Soc. Biol. Sci. Ser. B, 270: 313-321.
10. Kondo K, Shiba M, Yamaji H, Morota T, Zhengmin C, Huixia P, Shoyama Y (2007). Species Identification of Licorice Using nrDNA and cpDNA Genetic Markers. Biol. Pharm. Bull., 30: 1497-1502.
11. Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005). Use of DNA barcodes to identify flowering plants. Proc. Natl. Acad. Sci. U.S.A., 102: 8369-8374.
12. Kress WJ, Erickson DL (2007). A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region. PLOS ONE, 6: e508.
13. Meyer CP, Paulay G (2005). DNA barcoding: error rates based on comprehensive sampling. PLoS Biol., 3: e422.
14. Nakai R, Shoyama Y, Shiraishi S (1996). Genetic Characterization of Epimedium Species Using Random Amplified Polymorphic DNA (RAPD) and PCR-Restriction Fragment Length Polymorphism (RFLP) Diagnosis. Biol. Pharm. Bull., 19: 67-70.
15. Newmaster SG, Fazekas AJ, Ragupathy S (2006). DNA barcoding in lant plant: evalution of rbcL in a multigene tiered approach. Can. J. Bot., 84: 335-341.
16. Pharmacopoeia Committee of China (2010). Pharmacopoeia of People's Republic of China. Beijing: Chemical Industry Press.
17. Sass C, Little DP, Stevenson DW, Specht CD (2007). DNA Barcoding in the Cycadales: Testing the Potential of Proposed Barcoding Markers for Species Identification of Cycads. PLOS ONE, 11: e1154.
18. Stearn WT (2002). The Genus Epimedium and Other Herbaceous Berberidaceae. Timber Press, Inc., Portland, OR, USA.
19. Sun Y, Fung KP, Leung PC, Shaw PC (2005). A phylogenetic analysis of Epimedium (Berberidaceae) based on nuclear ribosomal DNA sequences. Mol. Phylogenetics Evol., 35: 287-291.
20. Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, Valentini A, Vermat T, Corthier G, Christian B, Willerslev E (2007). Christian Brochmann and Eske Willerslev. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res., 35: e14.
21. Tamura K, Dudley J, Nei M, Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol. Biol. Evol., 24: 1596-1599.