-
1
-
-
47849125967
-
A multidimensional chromatography technology for in-depth phosphoproteome analysis
-
Albuquerque CP, Smolka MB, Payne SH, Bafna V, Eng J, Zhou H. 2008. A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics 7: 1389-1396.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1389-1396
-
-
Albuquerque, C.P.1
Smolka, M.B.2
Payne, S.H.3
Bafna, V.4
Eng, J.5
Zhou, H.6
-
2
-
-
0041828954
-
FACT facilitates transcriptiondependent nucleosome alteration
-
Belotserkovskaya R, Oh S, Bondarenko VA, Orphanides G, Studitsky VM, Reinberg D. 2003. FACT facilitates transcriptiondependent nucleosome alteration. Science 301: 1090-1093.
-
(2003)
Science
, vol.301
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
Oh, S.2
Bondarenko, V.A.3
Orphanides, G.4
Studitsky, V.M.5
Reinberg, D.6
-
3
-
-
21744445074
-
The yeast FACT complex has a role in transcriptional initiation
-
Biswas D, Yu Y, Prall M, Formosa T, Stillman DJ. 2005. The yeast FACT complex has a role in transcriptional initiation. Mol Cell Biol 25: 5812-5822.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 5812-5822
-
-
Biswas, D.1
Yu, Y.2
Prall, M.3
Formosa, T.4
Stillman, D.J.5
-
4
-
-
33847784791
-
Multiple levels of cyclin specificity in cell-cycle control
-
Bloom J, Cross FR. 2007. Multiple levels of cyclin specificity in cell-cycle control. Nat Rev Mol Cell Biol 8: 149-160.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 149-160
-
-
Bloom, J.1
Cross, F.R.2
-
5
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, et al. 2010. A global protein kinase and phosphatase interaction network in yeast. Science 328: 1043-1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
Larsen, B.6
Lin, Z.Y.7
Breitkreutz, B.J.8
Stark, C.9
Liu, G.10
-
6
-
-
77956914230
-
Functional characterization of ATAD2 as a new cancer/testis factor and a predictor of poor prognosis in breast and lung cancers
-
Caron C, Lestrat C, Marsal S, Escoffier E, Curtet S, Virolle V, Barbry P, Debernardi A, Brambilla C, Brambilla E, et al. 2010. Functional characterization of ATAD2 as a new cancer/testis factor and a predictor of poor prognosis in breast and lung cancers. Oncogene 29: 5171-5181.
-
(2010)
Oncogene
, vol.29
, pp. 5171-5181
-
-
Caron, C.1
Lestrat, C.2
Marsal, S.3
Escoffier, E.4
Curtet, S.5
Virolle, V.6
Barbry, P.7
Debernardi, A.8
Brambilla, C.9
Brambilla, E.10
-
7
-
-
33847778786
-
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
-
Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF. 2007. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc Natl Acad Sci 104: 2193-2198.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 2193-2198
-
-
Chi, A.1
Huttenhower, C.2
Geer, L.Y.3
Coon, J.J.4
Syka, J.E.5
Bai, D.L.6
Shabanowitz, J.7
Burke, D.J.8
Troyanskaya, O.G.9
Hunt, D.F.10
-
8
-
-
0035893314
-
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
-
Cho EJ, Kobor MS, Kim M, Greenblatt J, Buratowski S. 2001. Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes & Dev 15: 3319-3329.
-
(2001)
Genes & Dev
, vol.15
, pp. 3319-3329
-
-
Cho, E.J.1
Kobor, M.S.2
Kim, M.3
Greenblatt, J.4
Buratowski, S.5
-
9
-
-
0035163845
-
Transcriptional regulation and function during the human cell cycle
-
Cho RJ, Huang M, Campbell MJ, Dong H, Steinmetz L, Sapinoso L, Hampton G, Elledge SJ, Davis RW, Lockhart DJ. 2001. Transcriptional regulation and function during the human cell cycle. Nat Genet 27: 48-54.
-
(2001)
Nat Genet
, vol.27
, pp. 48-54
-
-
Cho, R.J.1
Huang, M.2
Campbell, M.J.3
Dong, H.4
Steinmetz, L.5
Sapinoso, L.6
Hampton, G.7
Elledge, S.J.8
Davis, R.W.9
Lockhart, D.J.10
-
10
-
-
70350537013
-
ATAD2 is a novel cofactor for MYC, overexpressed and amplified in aggressive tumors
-
Ciro M, Prosperini E, Quarto M, Grazini U, Walfridsson J, McBlane F, Nucifero P, Pacchiana G, Capra M, Christensen J, et al. 2009. ATAD2 is a novel cofactor for MYC, overexpressed and amplified in aggressive tumors. Cancer Res 69: 8491-8498.
-
(2009)
Cancer Res
, vol.69
, pp. 8491-8498
-
-
Ciro, M.1
Prosperini, E.2
Quarto, M.3
Grazini, U.4
Walfridsson, J.5
McBlane, F.6
Nucifero, P.7
Pacchiana, G.8
Capra, M.9
Christensen, J.10
-
11
-
-
2942739030
-
CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast
-
Costanzo M, Nishikawa JL, Tang X, Millman JS, Schub O, Breitkreuz K, Dewar D, Rupes I, Andrews B, Tyers M. 2004. CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast. Cell 117: 899-913.
-
(2004)
Cell
, vol.117
, pp. 899-913
-
-
Costanzo, M.1
Nishikawa, J.L.2
Tang, X.3
Millman, J.S.4
Schub, O.5
Breitkreuz, K.6
Dewar, D.7
Rupes, I.8
Andrews, B.9
Tyers, M.10
-
12
-
-
53749085710
-
Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation
-
doi:10.1371/journal.pone.0003273
-
Dermody JL, Dreyfuss JM, Villen J, Ogundipe B, Gygi SP, Park PJ, Ponticelli AS, Moore CL, Buratowski S, Bucheli ME. 2008. Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation. PLoS ONE 3: e3273. doi:10.1371/journal.pone.0003273.
-
(2008)
PLoS ONE
, vol.3
-
-
Dermody, J.L.1
Dreyfuss, J.M.2
Villen, J.3
Ogundipe, B.4
Gygi, S.P.5
Park, P.J.6
Ponticelli, A.S.7
Moore, C.L.8
Buratowski, S.9
Bucheli, M.E.10
-
13
-
-
0033166338
-
A role for transcriptional repressors in targeting the yeast Swi/Snf complex
-
Dimova D, Nackerdien Z, Furgeson S, Eguchi S, Osley MA. 1999. A role for transcriptional repressors in targeting the yeast Swi/Snf complex. Mol Cell 4: 75-83.
-
(1999)
Mol Cell
, vol.4
, pp. 75-83
-
-
Dimova, D.1
Nackerdien, Z.2
Furgeson, S.3
Eguchi, S.4
Osley, M.A.5
-
14
-
-
77952088459
-
An overview of Cdk1-controlled targets and processes
-
doi:10.1186/1747-1028-5-11
-
Enserink JM, Kolodner RD. 2010. An overview of Cdk1-controlled targets and processes. Cell Div 5: 11. doi:10.1186/1747-1028-5-11.
-
(2010)
Cell Div
, vol.5
, pp. 11
-
-
Enserink, J.M.1
Kolodner, R.D.2
-
15
-
-
79958830520
-
The Saccharomyces cerevisiae histone chaperone Rtt106 mediates the cell cycle recruitment of SWI/SNF and RSC to the HIR-dependent histone genes
-
doi:10.1371/journal/pone.0021113
-
Ferreira ME, Flaherty K, Prochasson P. 2011. The Saccharomyces cerevisiae histone chaperone Rtt106 mediates the cell cycle recruitment of SWI/SNF and RSC to the HIR-dependent histone genes. PLoS ONE 6: e21113. doi:10.1371/journal/pone.0021113.
-
(2011)
PLoS ONE
, vol.6
-
-
Ferreira, M.E.1
Flaherty, K.2
Prochasson, P.3
-
16
-
-
68349136923
-
Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression
-
Fillingham J, Kainth P, Lambert JP, van Bakel H, Tsui K, Pena-Castillo L, Nislow C, Figeys D, Hughes TR, Greenblatt J, et al. 2009. Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Mol Cell 35: 340-351.
-
(2009)
Mol Cell
, vol.35
, pp. 340-351
-
-
Fillingham, J.1
Kainth, P.2
Lambert, J.P.3
van Bakel, H.4
Tsui, K.5
Pena-Castillo, L.6
Nislow, C.7
Figeys, D.8
Hughes, T.R.9
Greenblatt, J.10
-
17
-
-
0036964090
-
Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: Polymerase passage may degrade chromatin structure
-
Formosa T, Ruone S, Adams MD, Olsen AE, Eriksson P, Yu Y, Rhoades AR, Kaufman PD, Stillman DJ. 2002. Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: Polymerase passage may degrade chromatin structure. Genetics 162: 1557-1571.
-
(2002)
Genetics
, vol.162
, pp. 1557-1571
-
-
Formosa, T.1
Ruone, S.2
Adams, M.D.3
Olsen, A.E.4
Eriksson, P.5
Yu, Y.6
Rhoades, A.R.7
Kaufman, P.D.8
Stillman, D.J.9
-
18
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dumpelfeld B, et al. 2006. Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
-
19
-
-
44149105911
-
PHOSIDA (phosphorylation site database): Management, structural and evolutionary investigation, and prediction of phosphosites
-
doi: 10.1186/gb-2007-8-11-r250
-
Gnad F, Ren S, Cox J, Olsen JV, Macek B, Oroshi M, Mann M. 2007. PHOSIDA (phosphorylation site database): Management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol 8: R250. doi: 10.1186/gb-2007-8-11-r250.
-
(2007)
Genome Biol
, vol.8
-
-
Gnad, F.1
Ren, S.2
Cox, J.3
Olsen, J.V.4
Macek, B.5
Oroshi, M.6
Mann, M.7
-
20
-
-
52049112154
-
Saccharomyces cerevisiae Yta7 regulates histone gene expression
-
Gradolatto A, Rogers RS, Lavender H, Taverna SD, Allis CD, Aitchison JD, Tackett AJ. 2008. Saccharomyces cerevisiae Yta7 regulates histone gene expression. Genetics 179: 291-304.
-
(2008)
Genetics
, vol.179
, pp. 291-304
-
-
Gradolatto, A.1
Rogers, R.S.2
Lavender, H.3
Taverna, S.D.4
Allis, C.D.5
Aitchison, J.D.6
Tackett, A.J.7
-
21
-
-
68849107666
-
A noncanonical bromodomain in the AAA ATPase protein Yta7 directs chromosomal positioning and barrier chromatin activity
-
Gradolatto A, Smart SK, Byrum S, Blair LP, Rogers RS, Kolar EA, Lavender H, Larson SK, Aitchison JD, Taverna SD, et al. 2009. A noncanonical bromodomain in the AAA ATPase protein Yta7 directs chromosomal positioning and barrier chromatin activity. Mol Cell Biol 29: 4604-4611.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 4604-4611
-
-
Gradolatto, A.1
Smart, S.K.2
Byrum, S.3
Blair, L.P.4
Rogers, R.S.5
Kolar, E.A.6
Lavender, H.7
Larson, S.K.8
Aitchison, J.D.9
Taverna, S.D.10
-
22
-
-
27844525514
-
Replication-independent histone deposition by the HIR complex and Asf1
-
Green EM, Antczak AJ, Bailey AO, Franco AA, Wu KJ, Yates JR 3rd, Kaufman PD. 2005. Replication-independent histone deposition by the HIR complex and Asf1. Curr Biol 15: 2044-2049.
-
(2005)
Curr Biol
, vol.15
, pp. 2044-2049
-
-
Green, E.M.1
Antczak, A.J.2
Bailey, A.O.3
Franco, A.A.4
Wu, K.J.5
Yates III., J.R.6
Kaufman, P.D.7
-
23
-
-
21244491441
-
Regulation of histone synthesis and nucleosome assembly
-
Gunjan A, Paik J, Verreault A. 2005. Regulation of histone synthesis and nucleosome assembly. Biochimie 87: 625-635.
-
(2005)
Biochimie
, vol.87
, pp. 625-635
-
-
Gunjan, A.1
Paik, J.2
Verreault, A.3
-
24
-
-
0023666061
-
Histone H2B repression causes cell-cycle-specific arrest in yeast: Effects on chromosomal segregation, replication, and transcription
-
Han M, Chang M, Kim UJ, Grunstein M. 1987. Histone H2B repression causes cell-cycle-specific arrest in yeast: Effects on chromosomal segregation, replication, and transcription. Cell 48: 589-597.
-
(1987)
Cell
, vol.48
, pp. 589-597
-
-
Han, M.1
Chang, M.2
Kim, U.J.3
Grunstein, M.4
-
26
-
-
70349546862
-
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution
-
Holt LJ, Tuch BB, Villen J, Johnson AD, Gygi SP, Morgan DO. 2009. Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325: 1682-1686.
-
(2009)
Science
, vol.325
, pp. 1682-1686
-
-
Holt, L.J.1
Tuch, B.B.2
Villen, J.3
Johnson, A.D.4
Gygi, S.P.5
Morgan, D.O.6
-
27
-
-
34147092780
-
Approaching a complete repository of sequence-verified protein- encoding clones for Saccharomyces cerevisiae
-
Hu Y, Rolfs A, Bhullar B, Murthy TV, Zhu C, Berger MF, Camargo AA, Kelley F, McCarron S, Jepson D, et al. 2007. Approaching a complete repository of sequence-verified protein- encoding clones for Saccharomyces cerevisiae. Genome Res 17: 536-543.
-
(2007)
Genome Res
, vol.17
, pp. 536-543
-
-
Hu, Y.1
Rolfs, A.2
Bhullar, B.3
Murthy, T.V.4
Zhu, C.5
Berger, M.F.6
Camargo, A.A.7
Kelley, F.8
McCarron, S.9
Jepson, D.10
-
28
-
-
26444591572
-
Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing
-
Huang S, Zhou H, Katzmann D, Hochstrasser M, Atanasova E, Zhang Z. 2005. Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing. Proc Natl Acad Sci 102: 13410-13415.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 13410-13415
-
-
Huang, S.1
Zhou, H.2
Katzmann, D.3
Hochstrasser, M.4
Atanasova, E.5
Zhang, Z.6
-
29
-
-
34247626968
-
A novel role for histone chaperones CAF-1 and Rtt106p in heterochromatin silencing
-
Huang S, Zhou H, Tarara J, Zhang Z. 2007. A novel role for histone chaperones CAF-1 and Rtt106p in heterochromatin silencing. EMBO J 26: 2274-2283.
-
(2007)
EMBO J
, vol.26
, pp. 2274-2283
-
-
Huang, S.1
Zhou, H.2
Tarara, J.3
Zhang, Z.4
-
30
-
-
70349774419
-
Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls G1 transcription in budding yeast
-
doi:10.1371/journal.pbio.1000188
-
Huang D, Kaluarachchi S, van Dyk D, Friesen H, Sopko R, Ye W, Bastajian N, Moffat J, Sassi H, Costanzo M, et al. 2009. Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls G1 transcription in budding yeast. PLoS Biol 7: e1000188. doi:10.1371/journal.pbio.1000188.
-
(2009)
PLoS Biol
, vol.7
-
-
Huang, D.1
Kaluarachchi, S.2
van Dyk, D.3
Friesen, H.4
Sopko, R.5
Ye, W.6
Bastajian, N.7
Moffat, J.8
Sassi, H.9
Costanzo, M.10
-
31
-
-
78549291781
-
ANCCA/ATAD2 overexpression identifies breast cancer patients with poor prognosis, acting to drive proliferation and survival of triple-negative cells through control of B-Myb and EZH2
-
Kalashnikova EV, Revenko AS, Gemo AT, Andrews NP, Tepper CG, Zou JX, Cardiff RD, Borowsky AD, Chen HW. 2010. ANCCA/ATAD2 overexpression identifies breast cancer patients with poor prognosis, acting to drive proliferation and survival of triple-negative cells through control of B-Myb and EZH2. Cancer Res 70: 9402-9412.
-
(2010)
Cancer Res
, vol.70
, pp. 9402-9412
-
-
Kalashnikova, E.V.1
Revenko, A.S.2
Gemo, A.T.3
Andrews, N.P.4
Tepper, C.G.5
Zou, J.X.6
Cardiff, R.D.7
Borowsky, A.D.8
Chen, H.W.9
-
32
-
-
1542290655
-
Transitions in RNA polymerase II elongation complexes at the 39 ends of genes
-
Kim M, Ahn SH, Krogan NJ, Greenblatt JF, Buratowski S. 2004. Transitions in RNA polymerase II elongation complexes at the 39 ends of genes. EMBO J 23: 354-364.
-
(2004)
EMBO J
, vol.23
, pp. 354-364
-
-
Kim, M.1
Ahn, S.H.2
Krogan, N.J.3
Greenblatt, J.F.4
Buratowski, S.5
-
33
-
-
0036787862
-
RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach
-
Krogan NJ, Kim M, Ahn SH, Zhong G, Kobor MS, Cagney G, Emili A, Shilatifard A, Buratowski S, Greenblatt JF. 2002. RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach. Mol Cell Biol 22: 6979-6992.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6979-6992
-
-
Krogan, N.J.1
Kim, M.2
Ahn, S.H.3
Zhong, G.4
Kobor, M.S.5
Cagney, G.6
Emili, A.7
Shilatifard, A.8
Buratowski, S.9
Greenblatt, J.F.10
-
34
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, et al. 2006. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
-
35
-
-
58149308056
-
Cdk1/Cdc28-dependent activation of the major triacylglycerol lipase Tgl4 in yeast links lipolysis to cell-cycle progression
-
Kurat CF, Wolinski H, Petschnigg J, Kaluarachchi S, Andrews B, Natter K, Kohlwein SD. 2009. Cdk1/Cdc28-dependent activation of the major triacylglycerol lipase Tgl4 in yeast links lipolysis to cell-cycle progression. Mol Cell 33: 53-63.
-
(2009)
Mol Cell
, vol.33
, pp. 53-63
-
-
Kurat, C.F.1
Wolinski, H.2
Petschnigg, J.3
Kaluarachchi, S.4
Andrews, B.5
Natter, K.6
Kohlwein, S.D.7
-
36
-
-
66149100528
-
A novel proteomics approach for the discovery of chromatinassociated protein networks
-
Lambert JP, Mitchell L, Rudner A, Baetz K, Figeys D. 2009. A novel proteomics approach for the discovery of chromatinassociated protein networks. Mol Cell Proteomics 8: 870-882.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 870-882
-
-
Lambert, J.P.1
Mitchell, L.2
Rudner, A.3
Baetz, K.4
Figeys, D.5
-
37
-
-
78650643943
-
Defining the Budding Yeast Chromatin-associated Interactome
-
doi:10,1038/msb.2010.104
-
Lambert JP, Fillingham J, Siahbazi M, Greenblatt J, Baetz K, Figeys D. 2010. Defining the budding yeast chromatin-associated interactome. Mol Syst Biol 6: 448. doi:10,1038/msb.2010.104.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 448
-
-
Lambert, J.P.1
Fillingham, J.2
Siahbazi, M.3
Greenblatt, J.4
Baetz, K.5
Figeys, D.6
-
38
-
-
0034671792
-
Global analysis of the genetic network controlling a bacterial cell cycle
-
Laub MT, McAdams HH, Feldblyum T, Fraser CM, Shapiro L. 2000. Global analysis of the genetic network controlling a bacterial cell cycle. Science 290: 2144-2148.
-
(2000)
Science
, vol.290
, pp. 2144-2148
-
-
Laub, M.T.1
McAdams, H.H.2
Feldblyum, T.3
Fraser, C.M.4
Shapiro, L.5
-
39
-
-
33947584417
-
Large-scale phosphorylation analysis of a-factor-arrested Saccharomyces cerevisiae
-
Li X, Gerber SA, Rudner AD, Beausoleil SA, Haas W, Villen J, Elias JE, Gygi SP. 2007. Large-scale phosphorylation analysis of a-factor-arrested Saccharomyces cerevisiae. J Proteome Res 6: 1190-1197.
-
(2007)
J Proteome Res
, vol.6
, pp. 1190-1197
-
-
Li, X.1
Gerber, S.A.2
Rudner, A.D.3
Beausoleil, S.A.4
Haas, W.5
Villen, J.6
Elias, J.E.7
Gygi, S.P.8
-
40
-
-
14544270984
-
Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates
-
Loog M, Morgan DO. 2005. Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates. Nature 434: 104-108.
-
(2005)
Nature
, vol.434
, pp. 104-108
-
-
Loog, M.1
Morgan, D.O.2
-
41
-
-
38549103074
-
Combined analysis reveals a core set of cycling genes
-
doi:10.1186/gb-2007-8-7-r146
-
Lu Y, Mahony S, Benos PV, Rosenfeld R, Simon I, Breeden LL, Bar-Joseph Z. 2007. Combined analysis reveals a core set of cycling genes. Genome Biol 8: R146. doi:10.1186/gb-2007-8-7-r146.
-
(2007)
Genome Biol
, vol.8
-
-
Lu, Y.1
Mahony, S.2
Benos, P.V.3
Rosenfeld, R.4
Simon, I.5
Breeden, L.L.6
Bar-Joseph, Z.7
-
42
-
-
0034665635
-
Cell cycleregulated phosphorylation of p220(NPAT) by cyclin E/Cdk2 in Cajal bodies promotes histone gene transcription
-
Ma T, Van Tine BA, Wei Y, Garrett MD, Nelson D, Adams PD, Wang J, Qin J, Chow LT, Harper JW. 2000. Cell cycleregulated phosphorylation of p220(NPAT) by cyclin E/Cdk2 in Cajal bodies promotes histone gene transcription. Genes Dev 14: 2298-2313.
-
(2000)
Genes Dev
, vol.14
, pp. 2298-2313
-
-
Ma, T.1
van Tine, B.A.2
Wei, Y.3
Garrett, M.D.4
Nelson, D.5
Adams, P.D.6
Wang, J.7
Qin, J.8
Chow, L.T.9
Harper, J.W.10
-
43
-
-
0242579933
-
The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo
-
Mason PB, Struhl K. 2003. The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo. Mol Cell Biol 23: 8323-8333.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 8323-8333
-
-
Mason, P.B.1
Struhl, K.2
-
44
-
-
0037334895
-
One-thousand-and-one substrates of protein kinase CK2?
-
Meggio F, Pinna LA. 2003. One-thousand-and-one substrates of protein kinase CK2? FASEB J 17: 349-368.
-
(2003)
FASEB J
, vol.17
, pp. 349-368
-
-
Meggio, F.1
Pinna, L.A.2
-
45
-
-
0031737085
-
Regulation of Cdc28 cyclindependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae
-
Mendenhall MD, Hodge AE. 1998. Regulation of Cdc28 cyclindependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae. Microbiol Mol Biol Rev 62: 1191-1243.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 1191-1243
-
-
Mendenhall, M.D.1
Hodge, A.E.2
-
46
-
-
0031466305
-
Cyclin-dependent kinases: Engines, clocks, and microprocessors
-
Morgan DO. 1997. Cyclin-dependent kinases: Engines, clocks, and microprocessors. Annu Rev Cell Dev Biol 13: 261-291.
-
(1997)
Annu Rev Cell Dev Biol
, vol.13
, pp. 261-291
-
-
Morgan, D.O.1
-
47
-
-
0035969559
-
Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication
-
Nash P, Tang X, Orlicky S, Chen Q, Gertler FB, Mendenhall MD, Sicheri F, Pawson T, Tyers M. 2001. Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication. Nature 414: 514-521.
-
(2001)
Nature
, vol.414
, pp. 514-521
-
-
Nash, P.1
Tang, X.2
Orlicky, S.3
Chen, Q.4
Gertler, F.B.5
Mendenhall, M.D.6
Sicheri, F.7
Pawson, T.8
Tyers, M.9
-
48
-
-
0036205048
-
Genome-wide location and regulated recruitment of the RSC nucleosomeremodeling complex
-
Ng HH, Robert F, Young RA, Struhl K. 2002. Genome-wide location and regulated recruitment of the RSC nucleosomeremodeling complex. Genes Dev 16: 806-819.
-
(2002)
Genes Dev
, vol.16
, pp. 806-819
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
49
-
-
22744437234
-
The cell cycle-regulated genes of Schizosaccharomyces pombe
-
doi:10.1371/journal.pbio.0030225
-
Oliva A, Rosebrock A, Ferrezuelo F, Pyne S, Chen H, Skiena S, Futcher B, Leatherwood J. 2005. The cell cycle-regulated genes of Schizosaccharomyces pombe. PLoS Biol 3: e225. doi:10.1371/journal.pbio.0030225.
-
(2005)
PLoS Biol
, vol.3
-
-
Oliva, A.1
Rosebrock, A.2
Ferrezuelo, F.3
Pyne, S.4
Chen, H.5
Skiena, S.6
Futcher, B.7
Leatherwood, J.8
-
50
-
-
0032498273
-
FACT, a factor that facilitates transcript elongation through nucleosomes
-
Orphanides G, LeRoy G, Chang CH, Luse DS, Reinberg D. 1998. FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92: 105-116.
-
(1998)
Cell
, vol.92
, pp. 105-116
-
-
Orphanides, G.1
Leroy, G.2
Chang, C.H.3
Luse, D.S.4
Reinberg, D.5
-
51
-
-
0033566129
-
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
-
Orphanides G, Wu WH, Lane WS, Hampsey M, Reinberg D. 1999. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400: 284-288.
-
(1999)
Nature
, vol.400
, pp. 284-288
-
-
Orphanides, G.1
Wu, W.H.2
Lane, W.S.3
Hampsey, M.4
Reinberg, D.5
-
52
-
-
0023478786
-
Trans-acting regulatory mutations that alter transcription of Saccharomyces cerevisiae histone genes
-
Osley MA, Lycan D. 1987. Trans-acting regulatory mutations that alter transcription of Saccharomyces cerevisiae histone genes. Mol Cell Biol 7: 4204-4210.
-
(1987)
Mol Cell Biol
, vol.7
, pp. 4204-4210
-
-
Osley, M.A.1
Lycan, D.2
-
53
-
-
0023055514
-
Identification of sequences in a yeast histone promoter involved in periodic transcription
-
Osley MA, Gould J, Kim S, Kane MY, Hereford L. 1986. Identification of sequences in a yeast histone promoter involved in periodic transcription. Cell 45: 537-544.
-
(1986)
Cell
, vol.45
, pp. 537-544
-
-
Osley, M.A.1
Gould, J.2
Kim, S.3
Kane, M.Y.4
Hereford, L.5
-
54
-
-
0034599529
-
Histone H2A is required for normal centromere function in Saccharomyces cerevisiae
-
Pinto I, Winston F. 2000. Histone H2A is required for normal centromere function in Saccharomyces cerevisiae. EMBO J 19: 1598-1612.
-
(2000)
EMBO J
, vol.19
, pp. 1598-1612
-
-
Pinto, I.1
Winston, F.2
-
55
-
-
27644470214
-
The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF
-
Prochasson P, Florens L, Swanson SK, Washburn MP, Workman JL. 2005. The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF. Genes Dev 19: 2534-2539.
-
(2005)
Genes Dev
, vol.19
, pp. 2534-2539
-
-
Prochasson, P.1
Florens, L.2
Swanson, S.K.3
Washburn, M.P.4
Workman, J.L.5
-
56
-
-
3543042493
-
Periodic gene expression program of the fission yeast cell cycle
-
Rustici G, Mata J, Kivinen K, Lio P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bahler J. 2004. Periodic gene expression program of the fission yeast cell cycle. Nat Genet 36: 809-817.
-
(2004)
Nat Genet
, vol.36
, pp. 809-817
-
-
Rustici, G.1
Mata, J.2
Kivinen, K.3
Lio, P.4
Penkett, C.J.5
Burns, G.6
Hayles, J.7
Brazma, A.8
Nurse, P.9
Bahler, J.10
-
57
-
-
8644287437
-
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
-
Schwabish MA, Struhl K. 2004. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol Cell Biol 24: 10111-10117.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 10111-10117
-
-
Schwabish, M.A.1
Struhl, K.2
-
58
-
-
68249119759
-
Prolyl isomerase Pin1 acts as a switch to control the degree of substrate ubiquitylation
-
Siepe D, Jentsch S. 2009. Prolyl isomerase Pin1 acts as a switch to control the degree of substrate ubiquitylation. Nat Cell Biol 11: 967-972.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 967-972
-
-
Siepe, D.1
Jentsch, S.2
-
59
-
-
34547499407
-
Proteome- wide identification of in vivo targets of DNA damage checkpoint kinases
-
Smolka MB, Albuquerque CP, Chen SH, Zhou H. 2007. Proteome- wide identification of in vivo targets of DNA damage checkpoint kinases. Proc Natl Acad Sci 104: 10364-10369.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 10364-10369
-
-
Smolka, M.B.1
Albuquerque, C.P.2
Chen, S.H.3
Zhou, H.4
-
60
-
-
31544482407
-
Mapping pathways and phenotypes by systematic gene overexpression
-
Sopko R, Huang D, Preston N, Chua G, Papp B, Kafadar K, Snyder M, Oliver SG, Cyert M, Hughes TR, et al. 2006. Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell 21: 319-330.
-
(2006)
Mol Cell
, vol.21
, pp. 319-330
-
-
Sopko, R.1
Huang, D.2
Preston, N.3
Chua, G.4
Papp, B.5
Kafadar, K.6
Snyder, M.7
Oliver, S.G.8
Cyert, M.9
Hughes, T.R.10
-
61
-
-
17644367887
-
Proteomic and genomic characterization of chromatin complexes at a boundary
-
Tackett AJ, Dilworth DJ, Davey MJ, O'Donnell M, Aitchison JD, Rout MP, Chait BT. 2005. Proteomic and genomic characterization of chromatin complexes at a boundary. J Cell Biol 169: 35-47.
-
(2005)
J Cell Biol
, vol.169
, pp. 35-47
-
-
Tackett, A.J.1
Dilworth, D.J.2
Davey, M.J.3
O'Donnell, M.4
Aitchison, J.D.5
Rout, M.P.6
Chait, B.T.7
-
62
-
-
0242300176
-
Targets of the cyclindependent kinase Cdk1
-
Ubersax JA, Woodbury EL, Quang PN, Paraz M, Blethrow JD, Shah K, Shokat KM, Morgan DO. 2003. Targets of the cyclindependent kinase Cdk1. Nature 425: 859-864.
-
(2003)
Nature
, vol.425
, pp. 859-864
-
-
Ubersax, J.A.1
Woodbury, E.L.2
Quang, P.N.3
Paraz, M.4
Blethrow, J.D.5
Shah, K.6
Shokat, K.M.7
Morgan, D.O.8
-
63
-
-
18344386042
-
Cell cycle-dependent transcription in yeast: Promoters, transcription factors, and transcriptomes
-
Wittenberg C, Reed SI. 2005. Cell cycle-dependent transcription in yeast: Promoters, transcription factors, and transcriptomes. Oncogene 24: 2746-2755.
-
(2005)
Oncogene
, vol.24
, pp. 2746-2755
-
-
Wittenberg, C.1
Reed, S.I.2
-
64
-
-
18844413266
-
Acetylation in histone H3 globular domain regulates gene expression in yeast
-
Xu F, Zhang K, Grunstein M. 2005. Acetylation in histone H3 globular domain regulates gene expression in yeast. Cell 121: 375-385.
-
(2005)
Cell
, vol.121
, pp. 375-385
-
-
Xu, F.1
Zhang, K.2
Grunstein, M.3
-
65
-
-
0242468997
-
The cyclin E/Cdk2 substrate p220(NPAT) is required for S-phase entry, histone gene expression, and Cajal body maintenance in human somatic cells
-
Ye X, Wei Y, Nalepa G, Harper JW. 2003. The cyclin E/Cdk2 substrate p220(NPAT) is required for S-phase entry, histone gene expression, and Cajal body maintenance in human somatic cells. Mol Cell Biol 23: 8586-8600.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 8586-8600
-
-
Ye, X.1
Wei, Y.2
Nalepa, G.3
Harper, J.W.4
-
66
-
-
0032520093
-
Expression of NPAT, a novel substrate of cyclin E-CDK2, promotes S-phase entry
-
Zhao J, Dynlacht B, Imai T, Hori T, Harlow E. 1998. Expression of NPAT, a novel substrate of cyclin E-CDK2, promotes S-phase entry. Genes Dev 12: 456-461.
-
(1998)
Genes Dev
, vol.12
, pp. 456-461
-
-
Zhao, J.1
Dynlacht, B.2
Imai, T.3
Hori, T.4
Harlow, E.5
-
67
-
-
0034665757
-
NPAT links cyclin E-Cdk2 to the regulation of replication-dependent histone gene transcription
-
Zhao J, Kennedy BK, Lawrence BD, Barbie DA, Matera AG, Fletcher JA, Harlow E. 2000. NPAT links cyclin E-Cdk2 to the regulation of replication-dependent histone gene transcription. Genes Dev 14: 2283-2297.
-
(2000)
Genes Dev
, vol.14
, pp. 2283-2297
-
-
Zhao, J.1
Kennedy, B.K.2
Lawrence, B.D.3
Barbie, D.A.4
Matera, A.G.5
Fletcher, J.A.6
Harlow, E.7
|