Alga-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains

Applied and Environmental Microbiology

Volumn 77, Issue 20, 2011, Pages 7307-7315

  Šimek, Karel ^a,b   Kasalický, Vojtěch ^a,b   Zapomělová, Eliška ^a   Horňák, Karel ^a  

^a INSTITUTE OF HYDROBIOLOGY   (Czech Republic)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAL SPECIES; AXENIC CULTURE; BACTERIAL COMMUNITY; BETAPROTEOBACTERIA; CHLAMYDOMONAS; CYANOBACTERIAL CULTURES; EXTRACELLULAR; GROWTH RESPONSE; GROWTH STIMULATION; POPULATION GROWTH;

ALGAE; ALGAE CONTROL; BACTERIA; GALLIUM ALLOYS; POPULATION STATISTICS; SEPARATION;

ECOLOGY;

ALGA; BACTERIUM; EXPERIMENTAL STUDY; MICROBIAL COMMUNITY; POPULATION GROWTH; TAXONOMY;

ARTICLE; BETAPROTEOBACTERIA; CHEMISTRY; CLASSIFICATION; CRYPTOPHYTA; CYANOBACTERIUM; ECOSYSTEM; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; GREEN ALGA; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY;

BETAPROTEOBACTERIA; CHLOROPHYTA; CRYPTOPHYTA; CYANOBACTERIA; ECOSYSTEM; ENVIRONMENTAL MICROBIOLOGY; IN SITU HYBRIDIZATION, FLUORESCENCE;

EID: 82955205951     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05107-11     Document Type: Article

References (41)

1. Alonso, C., M. Zeder, C. Piccini, D. Conde, and J. Pernthaler. 2009. Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon. Environ. Microbiol. 11:867-876.
2. Buck, U., H.-P. Grossart, R. Amann, and J. Pernthaler. 2009. Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake. Environ. Microbiol. 11:1854-1865.
3. Cole, J. J. 1982. Interactions between bacteria and algae in aquatic ecosystems. Annu. Rev. Ecol. Sys. 13:291-314.
4. Giroldo, D., P. I. C. Ortolano, and A. A. H. Vieira. 2007. Bacteria-algae association in batch cultures of phytoplankton from a tropical reservoir: the significance of algal carbohydrates. Fresh. Biol. 52:1281-1289.
5. Giroldo, D., and A. A. H. Vieira. 2005. Polymeric and free sugars released by three phytoplanktonic species from a freshwater tropical eutrophic reservoir. J. Plankton Res. 27:695-705.
6. Grossart, H.-P., F. Levold, M. Allgaier, M. Simon, and T. Brinkhoff. 2005. Marine diatom species harbour distinct bacterial communities. Environ. Microbiol. 7:860-873.
7. Guillard, R. R. L., and C. J. Lorenzen. 1972. Yellow-green algae with chlorophyllide c. J. Phycol. 8:10-14.
8. Hahn, M. W., et al. 2010. Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. Int. J. Syst. Evol. Microbiol. 60:1358-1365.
9. Hahn, M. W., E. Lang, U. Brandt, and C. Spröer. 2011. Polynucleobacter acidiphobus sp. nov., a representative of an abundant group of planktonic freshwater bacteria. Int. J. Syst. Evol. Microbiol. 61:788-794.
10. Hahn, M. W., A. Minasyan, E. Lang, U. Koll, and C. Spröer. 2011. Polynucleobacter difficilis sp. nov., a planktonic freshwater bacterium affiliated with subcluster B1 of the genus Polynucleobacter. Int. J. Syst. Evol. Microbiol. [Epub ahead of print.] doi:10.1099/ijs.0.031393-0.
11. Hahn, M. W., M. Pöckl, and Q. L. Wu. 2005. Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Appl. Environ. Microbiol. 71:4539-4547.
12. Hahn, M. W., P. Stadler, Q. L. Wu, and M. Pöckl. 2004. The filtration- acclimatization method for isolation of an important fraction of the not readily cultivable bacteria. J. Microb. Methods 57:379-390.
13. Horňák, K., J. Jezbera, J. Nedoma, J. Gasol, and K.Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquat. Microb. Ecol. 45:277-289.
14. Horňák, K., J. Jezbera, and K. Šimek. 2008. Effects of a Microcystis aeruginosa bloom and bacterivory on bacterial abundance and activity in a eutrophic reservoir. Aquat. Microb. Ecol. 52:107-117.
15. Horner-Devine, M. C., M. A. Leibold, V. Smith, and B. J. M. Bohannan. 2003. Bacterial diversity patterns along a gradient of primary productivity. Ecol. Lett. 6:613-622.
16. Jezbera, J., K. Horňák, and K.Šimek. 2005. Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of fluorescence in situ hybridization. FEMS Microb. Ecol. 52:351-363.
17. 2 area. Environ. Microbiol. 12:658-669.
18. Kasalický, V., J. K. Jezbera, K. Šimek, and M. W. Hahn. 2010: Limnohabitans planktonicus sp. nov., and Limnohabitans parvus sp. nov., two novel planktonic Betaproteobacteria isolated from a freshwater reservoir. Int. J. Syst. Evol. Microbiol. 60:2710-2714.
19. Lindström, E. S. 2001. Investigating influential factors on bacterioplankton community composition: results from a field study of five mesotrophic lakes. Microb. Ecol. 42:598-605.
20. Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:593-600.
21. Murray, A. E., C. Arnosti, C. L. De La Rocha, H. P. Grossart, and U. Passow. 2007. Microbial dynamics in autotrophic and heterotrophic seawater mesocosms. II. Bacterioplankton community structure and hydrolytic enzyme activities. Aquat. Microb. Ecol. 49:123-141.
22. Newton, R. J., S. E. Jones, A. K. D. Eiler, McMahon, and S. Bertilsson. 2011. A guide to the natural history of freshwater lake bacteria. Microbiol. Mol. Biol. Rev. 75:14-49.
23. Peréz, M. T., and R. Sommaruga. 2006. Differential effect of algal- and soil-derived dissolved organic matter on alpine lake bacterial community composition and activity. Limnol. Oceanogr. 51:2527-2537.
24. Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68:3094-3101.
25. Posch, T., et al. 1999. Predator-induced changes of bacterial size structure and productivity studied on an experimental microbial community. Aquat. Microb. Ecol. 18:235-246.
26. Reynolds, C. S. 1984. The ecology of freshwater phytoplankton. Cambridge University Press, Cambridge, United Kingdom.
27. Rychtecký, P., and P. Znachor. 2011. Spatial heterogeneity and seasonal succession of phytoplankton along the longitudinal gradient in a eutrophic reservoir. Hydrobiologia 663:175-186.
28. Salcher, M. M., J. Pernthaler, M. Zeder, R. Psenner, and T. Posch. 2008. Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake. Environ. Microbiol. 10:2074-2086.
29. Sapp, M., G. Gerdts, M. Wellinger, and A. Wichels. 2008. Consuming algal products: trophic interactions of bacteria and a diatom species determined by RNA stable isotope probing. Helgol. Mar. Res. 62:283-287.
30. Sapp, M., A. Wichels, and G. Gerdts. 2007. Impacts of cultivation of marine diatoms on the associated bacterial community. Appl. Environ. Microbiol. 73:3117-3120.
31. Sekar, R., et al. 2003. An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl. Environ. Microbiol. 69:2928-2935.
32. Šimek, K., et al. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environ. Microbiol. 8:1613-1624.
33. Šimek, K., et al. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquat. Microb. Ecol. 51:249-262.
34. Šimek, K., V. Kasalický, K. Horňák, M. W. Hahn, and M. G. Weinbauer. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Appl. Environ. Microbiol. 76:1406-1416.
35. Šimek, K., et al. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster, representing a core group of the betaproteobacterial genus Limnohabitans. Appl. Environ. Microbiol. 76:631-639.
36. Šimek, K., et al. 2001. Changes in bacterial community composition, dynamics, and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl. Environ. Microbiol. 67:2723-2733.
37. Šimek, K., et al. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Appl. Environ. Microbiol. 63:587-595.
38. Sundh, I. 1992. Biochemical composition of dissolved organic carbon derived from phytoplankton and used by heterotrophic bacteria. Appl. Environ. Microbiol. 58:2938-2947.
39. Wu, Q. L., and M. W. Hahn. 2006. Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake revealed at three phylogenetic levels. FEMS Microb. Ecol. 57:67-79.
40. Wu, Q. L., and M. W. Hahn. 2006. High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake. Environ. Microbiol. 8:1660-1666.
41. Yooseph, S., et al. 2010. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 468:60-66.