-
1
-
-
33846978784
-
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
-
Dupuy A, Simon RM, (2007) Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 99: 147-157.
-
(2007)
J Natl Cancer Inst
, vol.99
, pp. 147-157
-
-
Dupuy, A.1
Simon, R.M.2
-
2
-
-
77955362168
-
Clinically relevant characterization of lung adenocarcinoma subtypes based on cellular pathways: an international validation study
-
Bryant CM, Albertus DL, Kim S, Chen G, Brambilla C, et al. (2010) Clinically relevant characterization of lung adenocarcinoma subtypes based on cellular pathways: an international validation study. PLoS One 5: e11712.
-
(2010)
PLoS One
, vol.5
-
-
Bryant, C.M.1
Albertus, D.L.2
Kim, S.3
Chen, G.4
Brambilla, C.5
-
3
-
-
34547844100
-
Meta-Analysis of Gene Expression Data: A Predictor-Based Approach
-
Fishel I, Kaufman A, Ruppin E, (2007) Meta-Analysis of Gene Expression Data: A Predictor-Based Approach. Bioinformatics.
-
(2007)
Bioinformatics
-
-
Fishel, I.1
Kaufman, A.2
Ruppin, E.3
-
4
-
-
13444249852
-
Prediction of cancer outcome with microarrays: a multiple random validation strategy
-
Michiels S, Koscielny S, Hill C, (2005) Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 365: 488-492.
-
(2005)
Lancet
, vol.365
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
-
5
-
-
33748093767
-
Linking oncogenic pathways with therapeutic opportunities
-
Bild AH, Potti A, Nevins JR, (2006) Linking oncogenic pathways with therapeutic opportunities. Nat Rev Cancer 6: 735-741.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 735-741
-
-
Bild, A.H.1
Potti, A.2
Nevins, J.R.3
-
6
-
-
61449106520
-
Survival-related profile, pathways, and transcription factors in ovarian cancer
-
Crijns AP, Fehrmann RS, de Jong S, Gerbens F, Meersma GJ, et al. (2009) Survival-related profile, pathways, and transcription factors in ovarian cancer. PLoS Med 6: e24.
-
(2009)
PLoS Med
, vol.6
-
-
Crijns, A.P.1
Fehrmann, R.S.2
de Jong, S.3
Gerbens, F.4
Meersma, G.J.5
-
7
-
-
0012949538
-
Optimal gene expression analysis by microarrays
-
Miller LD, Long PM, Wong L, Mukherjee S, McShane LM, et al. (2002) Optimal gene expression analysis by microarrays. Cancer Cell 2: 353-361.
-
(2002)
Cancer Cell
, vol.2
, pp. 353-361
-
-
Miller, L.D.1
Long, P.M.2
Wong, L.3
Mukherjee, S.4
McShane, L.M.5
-
8
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, et al. (2002) A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 347: 1999-2009.
-
(2002)
N Engl J Med
, vol.347
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
-
9
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, et al. (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 346: 1937-1947.
-
(2002)
N Engl J Med
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
-
10
-
-
33846425793
-
The prognostic role of a gene signature from tumorigenic breast-cancer cells
-
Liu R, Wang X, Chen GY, Dalerba P, Gurney A, et al. (2007) The prognostic role of a gene signature from tumorigenic breast-cancer cells. N Engl J Med 356: 217-226.
-
(2007)
N Engl J Med
, vol.356
, pp. 217-226
-
-
Liu, R.1
Wang, X.2
Chen, G.Y.3
Dalerba, P.4
Gurney, A.5
-
11
-
-
79961102335
-
Gene expression profiling reveals novel biomarkers in nonsmall cell lung cancer
-
Sanchez-Palencia A, Gomez-Morales M, Gomez-Capilla JA, Pedraza V, Boyero L, et al. (2010) Gene expression profiling reveals novel biomarkers in nonsmall cell lung cancer. Int J Cancer.
-
(2010)
Int J Cancer
-
-
Sanchez-Palencia, A.1
Gomez-Morales, M.2
Gomez-Capilla, J.A.3
Pedraza, V.4
Boyero, L.5
-
12
-
-
78649680251
-
Prognostic and predictive gene signature for adjuvant chemotherapy in resected non-small-cell lung cancer
-
Zhu CQ, Ding K, Strumpf D, Weir BA, Meyerson M, et al. (2010) Prognostic and predictive gene signature for adjuvant chemotherapy in resected non-small-cell lung cancer. J Clin Oncol 28: 4417-4424.
-
(2010)
J Clin Oncol
, vol.28
, pp. 4417-4424
-
-
Zhu, C.Q.1
Ding, K.2
Strumpf, D.3
Weir, B.A.4
Meyerson, M.5
-
13
-
-
19344363035
-
Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds
-
Chang HY, Sneddon JB, Alizadeh AA, Sood R, West RB, et al. (2004) Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds. PLoS Biol 2: E7.
-
(2004)
PLoS Biol
, vol.2
-
-
Chang, H.Y.1
Sneddon, J.B.2
Alizadeh, A.A.3
Sood, R.4
West, R.B.5
-
14
-
-
33644551073
-
Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers
-
Chi JT, Wang Z, Nuyten DS, Rodriguez EH, Schaner ME, et al. (2006) Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers. PLoS Med 3: e47.
-
(2006)
PLoS Med
, vol.3
-
-
Chi, J.T.1
Wang, Z.2
Nuyten, D.S.3
Rodriguez, E.H.4
Schaner, M.E.5
-
15
-
-
34250323878
-
Impact of supervised gene signatures of early hypoxia on patient survival
-
Seigneuric R, Starmans MH, Fung G, Krishnapuram B, Nuyten DS, et al. (2007) Impact of supervised gene signatures of early hypoxia on patient survival. Radiother Oncol 83: 374-382.
-
(2007)
Radiother Oncol
, vol.83
, pp. 374-382
-
-
Seigneuric, R.1
Starmans, M.H.2
Fung, G.3
Krishnapuram, B.4
Nuyten, D.S.5
-
16
-
-
77950571895
-
Gene expression-based prognostic signatures in lung cancer: ready for clinical use?
-
Subramanian J, Simon R, (2010) Gene expression-based prognostic signatures in lung cancer: ready for clinical use? J Natl Cancer Inst 102: 464-474.
-
(2010)
J Natl Cancer Inst
, vol.102
, pp. 464-474
-
-
Subramanian, J.1
Simon, R.2
-
17
-
-
37649004550
-
Three-gene prognostic classifier for early-stage non small-cell lung cancer
-
Lau SK, Boutros PC, Pintilie M, Blackhall FH, Zhu CQ, et al. (2007) Three-gene prognostic classifier for early-stage non small-cell lung cancer. J Clin Oncol 25: 5562-5569.
-
(2007)
J Clin Oncol
, vol.25
, pp. 5562-5569
-
-
Lau, S.K.1
Boutros, P.C.2
Pintilie, M.3
Blackhall, F.H.4
Zhu, C.Q.5
-
18
-
-
33746910265
-
Concordance among gene-expression-based predictors for breast cancer
-
Fan C, Oh DS, Wessels L, Weigelt B, Nuyten DS, et al. (2006) Concordance among gene-expression-based predictors for breast cancer. N Engl J Med 355: 560-569.
-
(2006)
N Engl J Med
, vol.355
, pp. 560-569
-
-
Fan, C.1
Oh, D.S.2
Wessels, L.3
Weigelt, B.4
Nuyten, D.S.5
-
19
-
-
62449271525
-
Prognostic gene signatures for non-small-cell lung cancer
-
Boutros PC, Lau SK, Pintilie M, Liu N, Shepherd FA, et al. (2009) Prognostic gene signatures for non-small-cell lung cancer. Proc Natl Acad Sci U S A 106: 2824-2828.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 2824-2828
-
-
Boutros, P.C.1
Lau, S.K.2
Pintilie, M.3
Liu, N.4
Shepherd, F.A.5
-
20
-
-
77958524801
-
Should we abandon the t-test in the analysis of gene expression microarray data: a comparison of variance modeling strategies
-
Jeanmougin M, de Reynies A, Marisa L, Paccard C, Nuel G, et al. (2010) Should we abandon the t-test in the analysis of gene expression microarray data: a comparison of variance modeling strategies. PLoS One 5: e12336.
-
(2010)
PLoS One
, vol.5
-
-
Jeanmougin, M.1
de Reynies, A.2
Marisa, L.3
Paccard, C.4
Nuel, G.5
-
21
-
-
74549174585
-
DNA microarrays are predictive of cancer prognosis: a re-evaluation
-
Fan X, Shi L, Fang H, Cheng Y, Perkins R, et al. (2010) DNA microarrays are predictive of cancer prognosis: a re-evaluation. Clin Cancer Res 16: 629-636.
-
(2010)
Clin Cancer Res
, vol.16
, pp. 629-636
-
-
Fan, X.1
Shi, L.2
Fang, H.3
Cheng, Y.4
Perkins, R.5
-
22
-
-
13444282534
-
Outcome signature genes in breast cancer: is there a unique set?
-
Ein-Dor L, Kela I, Getz G, Givol D, Domany E, (2005) Outcome signature genes in breast cancer: is there a unique set? Bioinformatics 21: 171-178.
-
(2005)
Bioinformatics
, vol.21
, pp. 171-178
-
-
Ein-Dor, L.1
Kela, I.2
Getz, G.3
Givol, D.4
Domany, E.5
-
23
-
-
77954168391
-
Effect of training-sample size and classification difficulty on the accuracy of genomic predictors
-
Popovici V, Chen W, Gallas BG, Hatzis C, Shi W, et al. (2010) Effect of training-sample size and classification difficulty on the accuracy of genomic predictors. Breast Cancer Res 12: R5.
-
(2010)
Breast Cancer Res
, vol.12
-
-
Popovici, V.1
Chen, W.2
Gallas, B.G.3
Hatzis, C.4
Shi, W.5
-
24
-
-
69249085408
-
Stability and aggregation of ranked gene lists
-
Boulesteix AL, Slawski M, (2009) Stability and aggregation of ranked gene lists. Brief Bioinform 10: 556-568.
-
(2009)
Brief Bioinform
, vol.10
, pp. 556-568
-
-
Boulesteix, A.L.1
Slawski, M.2
-
25
-
-
77956582675
-
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
-
Xu WW, Carter CJ, (2010) Parallel multiplicity and error discovery rate (EDR) in microarray experiments. BMC Bioinformatics 11: 465.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 465
-
-
Xu, W.W.1
Carter, C.J.2
-
26
-
-
0242361278
-
Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment
-
Ntzani EE, Ioannidis JP, (2003) Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment. Lancet 362: 1439-1444.
-
(2003)
Lancet
, vol.362
, pp. 1439-1444
-
-
Ntzani, E.E.1
Ioannidis, J.P.2
-
27
-
-
0242606431
-
Microarrays: how many do you need?
-
Zien A, Fluck J, Zimmer R, Lengauer T, (2003) Microarrays: how many do you need? J Comput Biol 10: 653-667.
-
(2003)
J Comput Biol
, vol.10
, pp. 653-667
-
-
Zien, A.1
Fluck, J.2
Zimmer, R.3
Lengauer, T.4
-
28
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, et al. (2005) Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc Natl Acad Sci U S A 102: 3738-3743.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
-
29
-
-
26444546442
-
An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
-
Miller LD, Smeds J, George J, Vega VB, Vergara L, et al. (2005) An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. Proc Natl Acad Sci U S A 102: 13550-13555.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 13550-13555
-
-
Miller, L.D.1
Smeds, J.2
George, J.3
Vega, V.B.4
Vergara, L.5
-
30
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y, Sieuwerts AM, Look MP, et al. (2005) Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365: 671-679.
-
(2005)
Lancet
, vol.365
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
Sieuwerts, A.M.4
Look, M.P.5
|