Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 16, 2006, Pages 6368-6373

  Mulligan, Megan K ^a   Ponomarev, Igor ^a   Hitzemann, Robert J ^b,c   Belknap, John K ^b,c   Tabakoff, Boris ^d   Harris, R Adron ^a   Crabbe, John C ^b,c   Blednov, Yuri A ^a   Grahame, Nicholas J ^e   Phillips, Tamara J ^b,c   Finn, Deborah A ^b,c   Hoffman, Paula L ^d   Iyer, Vishwanath R ^a   Koob, George F ^f   Bergeson, Susan E ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^c OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^d UNIVERSITY OF COLORADO   (United States)

^e INDIANA UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Alcoholism; Gene expression; Microarray

Indexed keywords

ALCOHOL DRINKING; ALCOHOLISM; ANIMALS; BRAIN; GENE EXPRESSION REGULATION; GENETIC PREDISPOSITION TO DISEASE; HUMANS; MICE; MICE, INBRED STRAINS; OLIGODEOXYRIBONUCLEOTIDES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; QUANTITATIVE TRAIT LOCI; TRANSCRIPTION, GENETIC;

ANIMALIA; RODENTIA;

EID: 33646574675     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0510188103     Document Type: Article

References (39)

1. Crabbe, J. C. (2002) Am. J. Med. Genet. 114, 969-974.
2. McClearn, G., Wilson, J. & Meredith, W. (1970) The Use of Isogenic and Heterogenic Mouse Stocks in Behavioral Research (Appleton-Century-Crofts, New York).
3. Belknap, J. K. & Atkins, A. L. (2001) Mamm. Genome 12, 893-899.
4. Blednov, Y. A., Metten, P., Finn, D. A., Rhodes, J. S., Bergeson, S. E., Harris, R. A. & Crabbe, J. C. (2005) Alcohol. Clin. Exp. Res. 29, 1949-1958.
5. Phillips, T. J., Crabbe, J. C., Metten, P. & Belknap, J. K. (1994) Alcohol. Clin. Exp. Res. 18, 931-941.
6. Grahame, N. J., Li, T. K. & Lumeng, L. (1999) Behav. Genet. 29, 47-57.
7. Wang, J., Williams, R. W. & Manly, K. F. (2003) Neuroinformatics 1, 299-308.
8. Phillips, T. J., Terdal, E. S. & Crabbe, J. C. (1990) Behav. Genet. 20, 473-480.
9. Phillips, T. J., Belknap, J. K., Hitzemann, R. J., Buck, K. J., Cunningham, C. L. & Crabbe, J. C. (2002) Genes Brain Behav. 1, 14-26.
10. Rhodes, D. R., Yu, J., Shanker, K., Deshpande, N., Varambally, R., Ghosh, D., Barrette, T., Pandey, A. & Chinnaiyan, A. M. (2004) Proc. Natl. Acad. Sci. USA 101, 9309-9314.
11. Moreau, Y., Aerts, S., De Moor, B., De Strooper, B. & Dabrowski, M. (2003) Trends Genet. 19, 570-577.
12. Rosenthal, D. (1994) Parametric Measures of Effect Size (Russell Sage Found., New York).
13. Huh, G. S., Boulanger, L. M., Du, H., Riquelme, P. A., Brotz, T. M. & Shatz, C. J. (2000) Science 290, 2155-2159.
14. Yu, F. H., Westenbroek, R. E., Silos-Santiago, I., McCormick, K. A., Lawson, D., Ge, P., Ferriera, H., Lilly, J., DiStefano, P. S., Catterall, W. A., et al. (2003) J. Neurosci. 23, 7577-7585.
15. Grieco, T. M., Malhotra, J. D., Chen, C., Isom, L. L. & Raman, I. M. (2005) Neuron 45, 233-244.
16. Hodge, C. W., Mehmert, K. K., Kelley, S. P., McMahon, T., Haywood, A., Olive, M. F., Wang, D., Sanchez-Perez, A. M. & Messing, R. O. (1999) Nat. Neurosci. 2, 997-1002.
17. Ho Sui, S. J., Mortimer, J. R., Arenillas, D. J., Brumm, J., Walsh, C. J., Kennedy, B. P. & Wasserman, W. W. (2005) Nucleic Acids Res. 33, 3154-3164.
18. Harris, M. A., Clark, J., Ireland, A., Lomax, J., Ashburner, M., Foulger, R., Eilbeck, K., Lewis, S., Marshall, B., Mungall, C., et al. (2004) Nucleic Acids Res. 32, D258-D261.
19. Zhang, B., Kirov, S. & Snoddy, J. (2005) Nucleic Acids Res. 33, W741-W748.
20. Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H. & Kanehisa, M. (1999) Nucleic Acids Res. 27, 29-34.
21. Jeong, H. J., Hong, S. H., Park, R. K., An, N. H. & Kim, H. M. (2005) Life Sci. 77, 2179-2192.
22. Diehn, M., Sherlock, G., Binkley, G., Jin, H., Matese, J. C., Hernandez-Boussard, T., Rees, C. A., Cherry, J. M., Holstein, D., Brown, P. O. & Alizadeh, A. A. (2003) Nucleic Acids Res. 31, 219-223.
23. Foroud, T., Edenberg, H. J., Goate, A., Rice, J., Flury, L., Koller, D. L., Bierut, L. J., Conneally, P. M., Nurnberger, J. I., Bucholz, K. K., et al. (2000) Alcohol. Clin. Exp. Res. 24, 933-945.
24. Engracia, V., Leite, M. M., Pagotto, R. C., Zucoloto, S., Barbosa, C. A. & Mestriner, M. A. (2003) Am. J. Med. Genet. 123, 257-260.
25. Blednov, Y. A., Bergeson, S. E., Walker, D., Ferreira, V. M., Kuziel, W. A. & Harris, R. A. (2005) Behav. Brain Res. 165, 110-125.
26. Carr, L. G., Habegger, K., Spence, J., Ritchotte, A., Liu, L., Lumeng, L., Li, T. K. & Foroud, T. (2003) Alcohol. Clin. Exp. Res. 27, 1710-1717.
27. Bice, P., Foroud, T., Bo, R., Castelluccio, P., Lumeng, L., Li, T. K. & Carr, L. G. (1998) Mamm. Genome 9, 949-955.
28. Liang, T., Habegger, K., Spence, J. P., Foroud, T., Ellison, J. A., Lumeng, L., Li, T. K. & Carr, L. G. (2004) Alcohol. Clin. Exp. Res. 28, 1622-1628.
29. Saba, L., Bhave, S., Lapadat, R., Hoffman, P. L., Belknap, J. K. & Tabakoff, B. (2006) Mamm. Genome, in press.
30. Finn, D. A., Belknap, J. K., Cronise, K., Yoneyama, N., Murillo, A. & Crabbe, J. C. (2005) Psychopharmacology 178, 471-480.
31. Rhodes, J. S., Best, K., Belknap, J. K., Finn, D. A. & Crabbe, J. C. (2005) Physiol. Behav. 84, 53-63.
32. O'Dell, L. E., Roberts, A. J., Smith, R. T. & Koob, G. F. (2004) Alcohol. Clin. Exp. Res. 28, 1676-1682.
33. Roberts, A. J., Heyser, C. J., Cole, M., Griffin, P. & Koob, G. F. (2000) Neuropsychopharmacology 22, 581-594.
34. McClung, C. A. & Nestler, E. J. (2003) Nat. Neurosci. 6, 1208-1215.
35. Yao, W. D., Gainetdinov, R. R., Arbuckle, M. I., Sotnikova, T. D., Cyr, M., Beaulieu, J. M., Torres, G. E., Grant, S. G. & Caron, M. G. (2004) Neuron 41, 625-638.
36. National Research Council (1996) Guide for the Care and Use of Laboratory Animals (Nat. Res. Council, Washington, DC).
37. DeRisi, J. L., Iyer, V. R. & Brown, P. O. (1997) Science 278, 680-686.
38. Storey, J. D. & Tibshirani, R. (2003) Proc. Natl. Acad. Sci. USA 100, 9440-9445.
39. Storey, J. D. & Tibshirani, R. (2003) Methods Mol. Biol. 224, 149-157.