Evidence for ATP-dependent structural rearrangement of nuclease catalytic site in DNA mismatch repair endonuclease MutL

Journal of Biological Chemistry

Volumn 286, Issue 49, 2011, Pages 42337-42348

  Yamamoto, Tatsuya ^a,c   Iino, Hitoshi ^a   Kim, Kwang ^b   Kuramitsu, Seiki ^a,b   Fukui, Kenji ^a  

^a RIKEN SPring 8 Center   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c KEIO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ATP BINDING; ATPASE DOMAIN; C-TERMINAL DOMAINS; CATALYTIC SITES; DAUGHTER STRANDS; ENDONUCLEASE ACTIVITIES; ENDONUCLEASES; FUNCTIONAL CHANGES; HUMAN DISEASE; HYDROGEN/DEUTERIUM EXCHANGE; IN-VITRO; MISMATCH REPAIR; N-TERMINAL DOMAINS; N-TERMINALS; REGULATORY MECHANISM; SINGLE-STRANDED DNA; STRUCTURAL CHANGE; STRUCTURAL REARRANGEMENT;

BINDING SITES; EXPERIMENTS; MASS SPECTROMETRY;

DNA;

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; PROTEIN MUTL;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME STRUCTURE; MASS SPECTROMETRY; MISMATCH REPAIR; MOLECULAR MODEL; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; BACILLUS SUBTILIS; CATALYSIS; CATALYTIC DOMAIN; CHROMATOGRAPHY; CROSS-LINKING REAGENTS; DNA; DNA MISMATCH REPAIR; ENDONUCLEASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HUMANS; MASS SPECTROMETRY; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; SCATTERING, RADIATION; SEQUENCE HOMOLOGY, AMINO ACID; X-RAYS;

EID: 82755163144     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.277335     Document Type: Article

References (43)

1. Friedberg, E. C., Walker, G. C., and Siede, W. (1995) DNA Repair and Mutagenesis, pp. 1-58, American Society for Microbiology, Washington, D. C.
2. Kunkel, T. A., and Erie, D. A. (2005) Annu. Rev. Biochem. 74, 681-710
3. Morita, R., Nakane, S., Shimada, A., Inoue, M., Iino, H., Wakamatsu, T., Fukui, K., Nakagawa, N., Masui, R., and Kuramitsu, S. (2010) J. Nucleic Acids 2010, 179594
4. Fishel, R., and Kolodner, R. D. (1995) Curr. Opin. Genet. Dev. 5, 382-395
5. Fishel, R., Lescoe, M. K., Rao, M. R., Copeland, N. G., Jenkins, N. A., Garber, J., Kane, M., and Kolodner, R. (1993) Cell 75, 1027-1038
6. Kadyrov, F. A., Dzantiev, L., Constantin, N., and Modrich, P. (2006) Cell 126, 297-308
7. Modrich, P. (2006) J. Biol. Chem. 281, 30305-30309
8. Fukui, K. (2010) J. Nucleic Acids 2010, 260512
9. Fukui, K., Nishida, M., Nakagawa, N., Masui, R., and Kuramitsu, S. (2008) J. Biol. Chem. 283, 12136-12145
10. Kosinski, J., Plotz, G., Guarné, A., Bujnicki, J. M., and Friedhoff, P. (2008) J. Mol. Biol. 382, 610-627
11. Duppatla, V., Bodda, C., Urbanke, C., Friedhoff, P., and Rao, D. N. (2009) Biochem. J. 423, 265-277
12. Mauris, J., and Evans, T. C. (2009) PLoS One 4, e7175
13. Pillon, M. C., Lorenowicz, J. J., Uckelmann, M., Klocko, A. D., Mitchell, R. R., Chung, Y. S., Modrich, P., Walker, G. C., Simmons, L. A., Friedhoff, P., and Guarné, A. (2010) Mol. Cell 39, 145-151
14. Kadyrov, F. A., Holmes, S. F., Arana, M. E., Lukianova, O. A., O'Donnell, M., Kunkel, T. A., and Modrich, P. (2007) J. Biol. Chem. 282, 37181-37190
15. Yang, W. (2007) DNA Repair 6, 135-139
16. Sacho, E. J., Kadyrov, F. A., Modrich, P., Kunkel, T. A., and Erie, D. A. (2008) Mol. Cell 29, 112-121
17. Ban, C., and Yang, W. (1998) Cell 95, 541-552
18. Ban, C., Junop, M., and Yang, W. (1999) Cell 97, 85-97
19. Guarné, A., Junop, M. S., and Yang, W. (2001) EMBO J. 20, 5521-5531
20. Dutta, R., and Inouye, M. (2000) Trends Biochem. Sci. 25, 24-28
21. Iino, H., Kim, K., Shimada, A., Masui, R., Kuramitsu, S., and Fukui, K. (2011) Biosci. Rep. 31, 309-322
22. Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G., and Thompson, J. D. (2003) Nucleic Acids Res. 31, 3497-3500
23. Kuramitsu, S., Hiromi, K., Hayashi, H., Morino, Y., and Kagamiyama, H. (1990) Biochemistry 29, 5469-5476
24. Konarev, P. V., Volkov, V. V., Sokolova, A. V., Kock, M. H. J., and Svergun, D. I. (2003) J. Appl. Crystallogr. 36, 1277-1282
25. Svergun, D. I. (1992) J. Appl. Crystallogr. 25, 495-503
26. Svergun, D. I. (1999) Biophys. J. 76, 2879-2886
27. Volkov, V. V., and Svergun, D. I. (2003) J. Appl. Crystallogr. 36, 860-864
28. Arai, R., Wriggers, W., Nishikawa, Y., Nagamune, T., and Fujisawa, T. (2004) Proteins 57, 829-838
29. Yamamoto, T., Shimizu, Y., Ueda, T., and Shiro, Y. (2010) J. Biol. Chem. 285, 5646-5652
30. Yamamoto, T., Izumi, S., and Gekko, K. (2006) FEBS Lett. 580, 3638-3642
31. Yamamoto, T., Izumi, S., and Gekko, K. (2004) J. Biochem. 135, 663- 671
32. Fukui, K., Kosaka, H., Kuramitsu, S., and Masui, R. (2007) Nucleic Acids Res. 35, 850-860
33. Levitt, M. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 11079-11084
34. Vajda, T., and Szabó, T. (1976) Acta Biochim. Biophys. Acad. Sci. Hung. 11, 287-294
35. Mendillo, M. L., Hargreaves, V. V., Jamison, J. W., Mo, A. O., Li, S., Putnam, C. D., Woods, V. L., Jr., and Kolodner, R. D. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 22223-22228
36. Mendillo, M. L., Putnam, C. D., Mo, A. O., Jamison, J. W., Li, S., Woods, V. L., Jr., and Kolodner, R. D. (2010) J. Biol. Chem. 285, 13170-13182
37. Namadurai, S., Jain, D., Kulkarni, D. S., Tabib, C. R., Friedhoff, P., Rao, D. N., and Nair, D. T. (2010) PLoS One 5, e13726
38. Kosinski, J., Steindorf, I., Bujnicki, J. M., Giron-Monzon, L., and Friedhoff, P. (2005) J. Mol. Biol. 351, 895-909
39. Kosinski, J., Hinrichsen, I., Bujnicki, J. M., Friedhoff, P., and Plotz, G. (2010) Hum. Mutat. 31, 975-982
40. Kondo, E., Horii, A., and Fukushige, S. (2001) Nucleic Acids Res. 29, 1695-1702
41. Mueller, J., Gazzoli, I., Bandipalliam, P., Garber, J. E., Syngal, S., and Kolodner, R. D. (2009) Cancer Res. 69, 7053-7061
42. Kiefer, F., Arnold, K., Künzli, M., Bordoli, L., and Schwede, T. (2009) Nucleic Acids Res. 37, D387-D392
43. Schwede, T., Kopp, J., Guex, N., and Peitsch, M. C. (2003) Nucleic Acids Res. 31, 3381-3385