-
1
-
-
0032573579
-
Zebrafish hox clusters and vertebrate genome evolution
-
Amores A, Force A, Yan YL, Joly L, Amemiya C, et al. (1998) Zebrafish hox clusters and vertebrate genome evolution. Science 282: 1711-1714.
-
(1998)
Science
, vol.282
, pp. 1711-1714
-
-
Amores, A.1
Force, A.2
Yan, Y.L.3
Joly, L.4
Amemiya, C.5
-
2
-
-
0028088884
-
Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster
-
Lukowitz W, Schroder C, Glaser G, Hulskamp M, Tautz D (1994) Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster. Mech Dev 45: 105-115.
-
(1994)
Mech Dev
, vol.45
, pp. 105-115
-
-
Lukowitz, W.1
Schroder, C.2
Glaser, G.3
Hulskamp, M.4
Tautz, D.5
-
3
-
-
0031889035
-
Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
-
Ludwig MZ, Patel NH, Kreitman M (1998) Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. Development 125: 949-958.
-
(1998)
Development
, vol.125
, pp. 949-958
-
-
Ludwig, M.Z.1
Patel, N.H.2
Kreitman, M.3
-
4
-
-
0041677607
-
Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation
-
Romano LA, Wray GA (2003) Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. Development 130: 4187-4199.
-
(2003)
Development
, vol.130
, pp. 4187-4199
-
-
Romano, L.A.1
Wray, G.A.2
-
5
-
-
46249134068
-
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation
-
doi:10.1371/journal.pgen.1000106
-
Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB (2008) Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation. PLoS Genet 4: e1000106. doi:10.1371/journal.pgen.1000106.
-
(2008)
PLoS Genet
, vol.4
-
-
Hare, E.E.1
Peterson, B.K.2
Iyer, V.N.3
Meier, R.4
Eisen, M.B.5
-
6
-
-
33645028299
-
Evolutionary and functional analysis of the tailless enhancer in Musca domestica and Drosophila melanogaster
-
Wratten NS, McGregor AP, Shaw PJ, Dover GA (2006) Evolutionary and functional analysis of the tailless enhancer in Musca domestica and Drosophila melanogaster. Evol Dev 8: 6-15.
-
(2006)
Evol Dev
, vol.8
, pp. 6-15
-
-
Wratten, N.S.1
McGregor, A.P.2
Shaw, P.J.3
Dover, G.A.4
-
7
-
-
70149102036
-
Conservation of enhancer location in divergent insects
-
Cande J, Goltsev Y, Levine MS (2009) Conservation of enhancer location in divergent insects. Proc Natl Acad Sci U S A 106: 14414-14419.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 14414-14419
-
-
Cande, J.1
Goltsev, Y.2
Levine, M.S.3
-
8
-
-
0036337804
-
Reciprocal functions of the Drosophila Yellow and Ebony proteins in the development and evolution of pigment patterns
-
Wittkopp PJ, True JR, Carroll SB (2002) Reciprocal functions of the Drosophila Yellow and Ebony proteins in the development and evolution of pigment patterns. Development 129: 1849-1858.
-
(2002)
Development
, vol.129
, pp. 1849-1858
-
-
Wittkopp, P.J.1
True, J.R.2
Carroll, S.B.3
-
9
-
-
61849127221
-
Yellow and ebony are the responsible genes for the larval color mutants of the silkworm Bombyx mori
-
Futahashi R, Sato J, Meng Y, Okamoto S, Daimon T, et al. (2008) yellow and ebony are the responsible genes for the larval color mutants of the silkworm Bombyx mori. Genetics 180: 1995-2005.
-
(2008)
Genetics
, vol.180
, pp. 1995-2005
-
-
Futahashi, R.1
Sato, J.2
Meng, Y.3
Okamoto, S.4
Daimon, T.5
-
10
-
-
77950520330
-
Identification, mRNA expression and functional analysis of several yellow family genes in Tribolium castaneum
-
Arakane Y, Dittmer NT, Tomoyasu Y, Kramer KJ, Muthukrishnan S, et al. (2010) Identification, mRNA expression and functional analysis of several yellow family genes in Tribolium castaneum. Insect Biochem Mol Biol 40: 259-266.
-
(2010)
Insect Biochem Mol Biol
, vol.40
, pp. 259-266
-
-
Arakane, Y.1
Dittmer, N.T.2
Tomoyasu, Y.3
Kramer, K.J.4
Muthukrishnan, S.5
-
11
-
-
13444304173
-
Chance caught on the wing: Cis-regulatory evolution and the origin of pigment patterns in Drosophila
-
Gompel N, Prud'homme B, Wittkopp PJ, Kassner VA, Carroll SB (2005) Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433: 481-487.
-
(2005)
Nature
, vol.433
, pp. 481-487
-
-
Gompel, N.1
Prud'homme, B.2
Wittkopp, P.J.3
Kassner, V.A.4
Carroll, S.B.5
-
12
-
-
0037125954
-
Evolution of yellow gene regulation and pigmentation in Drosophila
-
Wittkopp PJ, Vaccaro K, Carroll SB (2002) Evolution of yellow gene regulation and pigmentation in Drosophila. Curr Biol 12: 1547-1556.
-
(2002)
Curr Biol
, vol.12
, pp. 1547-1556
-
-
Wittkopp, P.J.1
Vaccaro, K.2
Carroll, S.B.3
-
13
-
-
33646191543
-
Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
-
Prud'homme B, Gompel N, Rokas A, Kassner VA, Williams TM, et al. (2006) Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene. Nature 440: 1050-1053.
-
(2006)
Nature
, vol.440
, pp. 1050-1053
-
-
Prud'homme, B.1
Gompel, N.2
Rokas, A.3
Kassner, V.A.4
Williams, T.M.5
-
14
-
-
33745227338
-
Regulation of body pigmentation by the Abdominal-B Hox protein and its gain and loss in Drosophila evolution
-
Jeong S, Rokas A, Carroll SB (2006) Regulation of body pigmentation by the Abdominal-B Hox protein and its gain and loss in Drosophila evolution. Cell 125: 1387-1399.
-
(2006)
Cell
, vol.125
, pp. 1387-1399
-
-
Jeong, S.1
Rokas, A.2
Carroll, S.B.3
-
15
-
-
0023445598
-
Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in Drosophila melanogaster
-
Geyer PK, Corces VG (1987) Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in Drosophila melanogaster. Genes Dev 1: 996-1004.
-
(1987)
Genes Dev
, vol.1
, pp. 996-1004
-
-
Geyer, P.K.1
Corces, V.G.2
-
16
-
-
0024402035
-
Regulatory elements involved in the tissuespecific expression of the yellow gene of Drosophila
-
Martin M, Meng YB, Chia W (1989) Regulatory elements involved in the tissuespecific expression of the yellow gene of Drosophila. Mol Gen Genet 218: 118-126.
-
(1989)
Mol Gen Genet
, vol.218
, pp. 118-126
-
-
Martin, M.1
Meng, Y.B.2
Chia, W.3
-
17
-
-
77951623809
-
Generation of a novel wing colour pattern by the Wingless morphogen
-
Werner T, Koshikawa S, Williams TM, Carroll SB (2010) Generation of a novel wing colour pattern by the Wingless morphogen. Nature 464: 1143-1148.
-
(2010)
Nature
, vol.464
, pp. 1143-1148
-
-
Werner, T.1
Koshikawa, S.2
Williams, T.M.3
Carroll, S.B.4
-
18
-
-
0036243079
-
Molecular phylogeny of the Drosophila virilis species group (Diptera: Drosophilidae) inferred from mitochondrial 12S and 16S ribosomal RNA genes
-
Spicer GS, Bell CD (2002) Molecular phylogeny of the Drosophila virilis species group (Diptera: Drosophilidae) inferred from mitochondrial 12S and 16S ribosomal RNA genes. Annuals of the Entomological Society of America 95: 156-161.
-
(2002)
Annuals of the Entomological Society of America
, vol.95
, pp. 156-161
-
-
Spicer, G.S.1
Bell, C.D.2
-
19
-
-
0028910659
-
Molecular phylogeny and divergence times of drosophilid species
-
Russo CA, Takezaki N, Nei M (1995) Molecular phylogeny and divergence times of drosophilid species. Mol Biol Evol 12: 391-404.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 391-404
-
-
Russo, C.A.1
Takezaki, N.2
Nei, M.3
-
20
-
-
2442458847
-
Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31
-
Groth AC, Fish M, Nusse R, Calos MP (2004) Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31. Genetics 166: 1775-1782.
-
(2004)
Genetics
, vol.166
, pp. 1775-1782
-
-
Groth, A.C.1
Fish, M.2
Nusse, R.3
Calos, M.P.4
-
21
-
-
38349076024
-
Regulatory divergence modifies limb length between mammals
-
Cretekos CJ, Wang Y, Green ED, Martin JF, Rasweiler JJt, et al. (2008) Regulatory divergence modifies limb length between mammals. Genes Dev 22: 141-151.
-
(2008)
Genes Dev
, vol.22
, pp. 141-151
-
-
Cretekos, C.J.1
Wang, Y.2
Green, E.D.3
Martin, J.F.4
Rasweiler, J.J.5
-
22
-
-
77954960062
-
Phenotypic robustness conferred by apparently redundant transcriptional enhancers
-
Frankel N, Davis GK, Vargas D, Wang S, Payre F, et al. (2010) Phenotypic robustness conferred by apparently redundant transcriptional enhancers. Nature 466: 490-493.
-
(2010)
Nature
, vol.466
, pp. 490-493
-
-
Frankel, N.1
Davis, G.K.2
Vargas, D.3
Wang, S.4
Payre, F.5
-
23
-
-
0034029614
-
Autoregulation and multiple enhancers control Math1 expression in the developing nervous system
-
Helms AW, Abney AL, Ben-Arie N, Zoghbi HY, Johnson JE (2000) Autoregulation and multiple enhancers control Math1 expression in the developing nervous system. Development 127: 1185-1196.
-
(2000)
Development
, vol.127
, pp. 1185-1196
-
-
Helms, A.W.1
Abney, A.L.2
Ben-Arie, N.3
Zoghbi, H.Y.4
Johnson, J.E.5
-
24
-
-
51149097760
-
Shadow enhancers as a source of evolutionary novelty
-
Hong JW, Hendrix DA, Levine MS (2008) Shadow enhancers as a source of evolutionary novelty. Science 321: 1314.
-
(2008)
Science
, vol.321
, pp. 1314
-
-
Hong, J.W.1
Hendrix, D.A.2
Levine, M.S.3
-
25
-
-
33645073400
-
A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies longrange ventral forebrain enhancers
-
Jeong Y, El-Jaick K, Roessler E, Muenke M, Epstein DJ (2006) A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies longrange ventral forebrain enhancers. Development 133: 761-772.
-
(2006)
Development
, vol.133
, pp. 761-772
-
-
Jeong, Y.1
El-Jaick, K.2
Roessler, E.3
Muenke, M.4
Epstein, D.J.5
-
26
-
-
21644473565
-
Dual regulation and redundant function of two eye-specific enhancers of the Drosophila retinal determination gene dachshund
-
Pappu KS, Ostrin EJ, Middlebrooks BW, Sili BT, Chen R, et al. (2005) Dual regulation and redundant function of two eye-specific enhancers of the Drosophila retinal determination gene dachshund. Development 132: 2895-2905.
-
(2005)
Development
, vol.132
, pp. 2895-2905
-
-
Pappu, K.S.1
Ostrin, E.J.2
Middlebrooks, B.W.3
Sili, B.T.4
Chen, R.5
-
27
-
-
12944307837
-
Comparative functional genomics revealed conservation and diversification of three enhancers of the isl1 gene for motor and sensory neuron-specific expression
-
Uemura O, Okada Y, Ando H, Guedj M, Higashijima S, et al. (2005) Comparative functional genomics revealed conservation and diversification of three enhancers of the isl1 gene for motor and sensory neuron-specific expression. Dev Biol 278: 587-606.
-
(2005)
Dev Biol
, vol.278
, pp. 587-606
-
-
Uemura, O.1
Okada, Y.2
Ando, H.3
Guedj, M.4
Higashijima, S.5
-
28
-
-
62149133491
-
Development and evolution of insect pigmentation: Genetic mechanisms and the potential consequences of pleiotropy
-
Wittkopp PJ, Beldade P (2008) Development and evolution of insect pigmentation: genetic mechanisms and the potential consequences of pleiotropy. Semin Cell Dev Biol 20: 65-71.
-
(2008)
Semin Cell Dev Biol
, vol.20
, pp. 65-71
-
-
Wittkopp, P.J.1
Beldade, P.2
-
29
-
-
0028268258
-
The bipartite D. melanogaster twist promoter is reorganized in D. virilis
-
Pan D, Valentine SA, Courey AJ (1994) The bipartite D. melanogaster twist promoter is reorganized in D. virilis. Mech Dev 46: 41-53.
-
(1994)
Mech Dev
, vol.46
, pp. 41-53
-
-
Pan, D.1
Valentine, S.A.2
Courey, A.J.3
-
30
-
-
54949151898
-
Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species
-
doi:10.1371/journal.pbio.0060261
-
Hauenschild A, Ringrose L, Altmutter C, Paro R, Rehmsmeier M (2008) Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species. PLoS Biol 6: e261. doi:10.1371/journal.pbio.0060261.
-
(2008)
PLoS Biol
, vol.6
-
-
Hauenschild, A.1
Ringrose, L.2
Altmutter, C.3
Paro, R.4
Rehmsmeier, M.5
-
31
-
-
33747885768
-
Evolution of cis-regulatory sequence and function in Diptera
-
Wittkopp PJ (2006) Evolution of cis-regulatory sequence and function in Diptera. Heredity 97: 139-147.
-
(2006)
Heredity
, vol.97
, pp. 139-147
-
-
Wittkopp, P.J.1
-
33
-
-
0033652644
-
A versatile vector set for animal transgenesis
-
Horn C, Wimmer EA (2000) A versatile vector set for animal transgenesis. Dev Genes Evol 210: 630-637.
-
(2000)
Dev Genes Evol
, vol.210
, pp. 630-637
-
-
Horn, C.1
Wimmer, E.A.2
-
34
-
-
33847660443
-
An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases
-
Bischof J, Maeda RK, Hediger M, Karch F, Basler K (2007) An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases. Proc Natl Acad Sci U S A 104: 3312-3317.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 3312-3317
-
-
Bischof, J.1
Maeda, R.K.2
Hediger, M.3
Karch, F.4
Basler, K.5
-
35
-
-
41349092785
-
Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes
-
Markstein M, Pitsouli C, Villalta C, Celniker SE, Perrimon N (2008) Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes. Nat Genet 40: 476-483.
-
(2008)
Nat Genet
, vol.40
, pp. 476-483
-
-
Markstein, M.1
Pitsouli, C.2
Villalta, C.3
Celniker, S.E.4
Perrimon, N.5
-
36
-
-
75549089967
-
The UCSC Genome Browser database: Update 2010
-
Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, et al. (2010) The UCSC Genome Browser database: update 2010. Nucleic Acids Res 38: D613-D619.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
-
37
-
-
33748324384
-
A language and environment for statistical computing
-
Vienna, Austria: R Foundation for Statistical Computing
-
RDC T (2005) A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2005)
-
-
Rdc, T.1
-
38
-
-
0034199476
-
The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences
-
Stothard P (2000) The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28: 1102-1104.
-
(2000)
Biotechniques
, vol.28
, pp. 1102-1104
-
-
Stothard, P.1
-
39
-
-
33644766962
-
A cisregulatory sequence within the yellow locus of Drosophila melanogaster required for normal male mating success
-
Drapeau MD, Cyran SA, Viering MM, Geyer PK, Long AD (2006) A cisregulatory sequence within the yellow locus of Drosophila melanogaster required for normal male mating success. Genetics 172: 1009-1030.
-
(2006)
Genetics
, vol.172
, pp. 1009-1030
-
-
Drapeau, M.D.1
Cyran, S.A.2
Viering, M.M.3
Geyer, P.K.4
Long, A.D.5
-
40
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14: 708-715.
-
(2004)
Genome Res
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.5
-
41
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
-
42
-
-
75549089967
-
The UCSC Genome Browser database: Update 2010
-
Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, et al. (2010) The UCSC Genome Browser database: update 2010. Nucleic Acids Res 38: D613-D619.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
|