-
1
-
-
0038056180
-
Proteases in blood clotting
-
Walsh, P. N. and Ahmad, S. S. (2002) Proteases in Blood Clotting. In Essays in Biochemistry: Proteases in Biology and Medicine (Hooper, N. M., Ed.) pp 95-111, Portland Press, London. (Pubitemid 36589197)
-
(2002)
Essays in Biochemistry
, vol.38
, pp. 95-111
-
-
Walsh, P.N.1
Ahmad, S.S.2
-
2
-
-
33751302887
-
Thrombin
-
In (Colman, R. W. Marder, V. J. Clowes, A. W. George, J. N. and Goldhaber, S. Z. Eds.) 5th ed. pp, Lippincott Williams and Wilkins, Philadelphia.
-
Swords Jenny, N., Lundblad, R. L., and Mann, K. G. (2006) Thrombin. In Hemostasis and Thrombosis: Basic Principles and Clinical Practice (Colman, R. W., Marder, V. J., Clowes, A. W., George, J. N., and Goldhaber, S. Z., Eds.) 5th ed., pp 193-213, Lippincott Williams and Wilkins, Philadelphia.
-
(2006)
Hemostasis and Thrombosis: Basic Principles and Clinical Practice
, pp. 193-213
-
-
Swords Jenny, N.1
Lundblad, R.L.2
Mann, K.G.3
-
3
-
-
0027409404
-
A player of many parts: The spotlight falls on thrombin's structure
-
DOI 10.1016/0049-3848(93)90002-6
-
Stubbs, M. T. and Bode, W. (1993) A player of many parts: The spotlight falls on thrombin's structure Thromb. Res. 69, 1-58 (Pubitemid 23068230)
-
(1993)
Thrombosis Research
, vol.69
, Issue.1
, pp. 1-58
-
-
Stubbs, M.T.1
Bode, W.2
-
4
-
-
77956279561
-
NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation
-
Lechtenberg, B. C., Johnson, D. J., Freund, S. M., and Huntington, J. A. (2010) NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation Proc. Natl. Acad. Sci. U.S.A. 107, 14087-14092
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14087-14092
-
-
Lechtenberg, B.C.1
Johnson, D.J.2
Freund, S.M.3
Huntington, J.A.4
-
6
-
-
0022529127
-
Effect of thrombomodulin on the kinetics of the interaction of thrombin with substrates and inhibitors
-
Hofsteenge, J., Taguchi, H., and Stone, S. R. (1986) Effect of thrombomodulin on the kinetics of the interaction of thrombin with substrates and inhibitors Biochem. J. 237, 243-251 (Pubitemid 16063113)
-
(1986)
Biochemical Journal
, vol.237
, Issue.1
, pp. 243-251
-
-
Hofsteenge, J.1
Taguchi, H.2
Stone, S.R.3
-
7
-
-
0037036360
-
Mapping of the catalytic groove preferences of factor Xa reveals an inadequate selectivity for its macromolecule substrates
-
DOI 10.1074/jbc.M201139200
-
Bianchini, E. P., Louvain, V. B., Marque, P. E., Juliano, M. A., Juliano, L., and Le Bonniec, B. F. (2002) Mapping of the catalytic groove preferences of factor Xa reveals an inadequate selectivity for its macromolecule substrates J. Biol. Chem. 277, 20527-20534 (Pubitemid 34967352)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.23
, pp. 20527-20534
-
-
Bianchini, E.P.1
Louvain, V.B.2
Marque, P.-E.3
Juliano, M.A.4
Juliano, L.5
Le Bonniec, B.F.6
-
8
-
-
67649617069
-
Subsite cooperativity in protease specificity
-
Ng, N. M., Pike, R. N., and Boyd, S. E. (2009) Subsite cooperativity in protease specificity Biol. Chem. 390, 401-407
-
(2009)
Biol. Chem.
, vol.390
, pp. 401-407
-
-
Ng, N.M.1
Pike, R.N.2
Boyd, S.E.3
-
9
-
-
0030848495
-
Site-specific dissection of substrate recognition by thrombin
-
Vindigni, A., Dang, Q. D., and Di Cera, E. (1997) Site-specific dissection of substrate recognition by thrombin Nat. Biotechnol. 15, 891-895 (Pubitemid 27391784)
-
(1997)
Nature Biotechnology
, vol.15
, Issue.9
, pp. 891-895
-
-
Vindigni, A.1
Dang, Q.D.2
Cera, E.D.3
-
10
-
-
0035879528
-
A substrate phage enzyme-linked immunosorbent assay to profile panels of proteases
-
DOI 10.1006/abio.2001.5167
-
Kridel, S. J., Chen, E., and Smith, J. W. (2001) A substrate phage enzyme-linked immunosorbent assay to profile panels of proteases Anal. Biochem. 294, 176-184 (Pubitemid 32641764)
-
(2001)
Analytical Biochemistry
, vol.294
, Issue.2
, pp. 176-184
-
-
Kridel, S.J.1
Chen, E.2
Smith, J.W.3
-
11
-
-
0035827522
-
Substrate hydrolysis by matrix metalloproteinase-9
-
Kridel, S. J., Chen, E., Kotra, L. P., Howard, E. W., Mobashery, S., and Smith, J. W. (2001) Substrate hydrolysis by matrix metalloproteinase-9 J. Biol. Chem. 276, 20572-20578
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 20572-20578
-
-
Kridel, S.J.1
Chen, E.2
Kotra, L.P.3
Howard, E.W.4
Mobashery, S.5
Smith, J.W.6
-
12
-
-
77957021680
-
High throughput substrate phage display for protease profiling
-
Ratnikov, B., Cieplak, P., and Smith, J. W. (2009) High throughput substrate phage display for protease profiling Methods Mol. Biol. 539, 93-114
-
(2009)
Methods Mol. Biol.
, vol.539
, pp. 93-114
-
-
Ratnikov, B.1
Cieplak, P.2
Smith, J.W.3
-
13
-
-
0028923753
-
Substrate specificity of tissue type plasminogen activator. Characterization of the fibrin independent specificity of t-PA for plasminogen
-
Madison, E. L., Coombs, G. S., and Corey, D. R. (1995) Substrate specificity of tissue type plasminogen activator. Characterization of the fibrin independent specificity of t-PA for plasminogen J. Biol. Chem. 270, 7558-7562
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 7558-7562
-
-
Madison, E.L.1
Coombs, G.S.2
Corey, D.R.3
-
14
-
-
0029128196
-
Origins of the specificity of tissue-type plasminogen activator
-
Ding, L., Coombs, G. S., Strandberg, L., Navre, M., Corey, D. R., and Madison, E. L. (1995) Origins of the specificity of tissue-type plasminogen activator Proc. Natl. Acad. Sci. U.S.A. 92, 7627-7631
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 7627-7631
-
-
Ding, L.1
Coombs, G.S.2
Strandberg, L.3
Navre, M.4
Corey, D.R.5
Madison, E.L.6
-
16
-
-
69849114679
-
The effects of exosite occupancy on the substrate specificity of thrombin
-
Ng, N. M., Quinsey, N. S., Matthews, A. Y., Kaiserman, D., Wijeyewickrema, L. C., Bird, P. I., Thompson, P. E., and Pike, R. N. (2009) The effects of exosite occupancy on the substrate specificity of thrombin Arch. Biochem. Biophys. 489, 48-54
-
(2009)
Arch. Biochem. Biophys.
, vol.489
, pp. 48-54
-
-
Ng, N.M.1
Quinsey, N.S.2
Matthews, A.Y.3
Kaiserman, D.4
Wijeyewickrema, L.C.5
Bird, P.I.6
Thompson, P.E.7
Pike, R.N.8
-
17
-
-
22544474376
-
Pops: A computational tool for modeling and predicting protease specificity
-
DOI 10.1142/S021972000500117X, PII S021972000500117X
-
Boyd, S. E., Pike, R. N., Rudy, R. B., Whisstock, J. C., and Garcia de la Banda, M. (2005) POPS: A computational tool for modeling and predicting protease specificity J. Bioinf. Comput. Biol. 3, 551-585 (Pubitemid 41015279)
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, Issue.3
, pp. 551-585
-
-
Boyd, S.E.1
Pike, R.N.2
Rudy, G.B.3
Whisstock, J.C.4
De La Banda, M.G.5
-
18
-
-
70349832234
-
Structural and kinetic determinants of protease substrates
-
Timmer, J. C., Zhu, W., Pop, C., Regan, T., Snipas, S. J., Eroshkin, A. M., Riedl, S. J., and Salvesen, G. S. (2009) Structural and kinetic determinants of protease substrates Nat. Struct. Mol. Biol. 16, 1101-1108
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1101-1108
-
-
Timmer, J.C.1
Zhu, W.2
Pop, C.3
Regan, T.4
Snipas, S.J.5
Eroshkin, A.M.6
Riedl, S.J.7
Salvesen, G.S.8
-
19
-
-
0025769350
-
A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G
-
Gronenborn, A. M., Filpula, D. R., Essig, N. Z., Achari, A., Whitlow, M., Wingfield, P. T., and Clore, G. M. (1991) A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G Science 253, 657-661 (Pubitemid 21917198)
-
(1991)
Science
, vol.253
, Issue.5020
, pp. 657-661
-
-
Gronenborn, A.M.1
Filpula, D.R.2
Essig, N.Z.3
Achari, A.4
Whitlow, M.5
Wingfield, P.T.6
Clore, G.M.7
-
20
-
-
0028176595
-
Measurement of the β-sheet-forming propensities of amino acids
-
Minor, D. L., Jr. and Kim, P. S. (1994) Measurement of the β-sheet-forming propensities of amino acids Nature 367, 660-663
-
(1994)
Nature
, vol.367
, pp. 660-663
-
-
Minor Jr., D.L.1
Kim, P.S.2
-
21
-
-
0033042932
-
Molecular dynamics as a tool to detect protein foldability. A mutant of domain B1 of protein G with non-native secondary structure propensities
-
Cregut, D. and Serrano, L. (1999) Molecular dynamics as a tool to detect protein foldability. A mutant of domain B1 of protein G with non-native secondary structure propensities Protein Sci. 8, 271-282 (Pubitemid 29072427)
-
(1999)
Protein Science
, vol.8
, Issue.2
, pp. 271-282
-
-
Cregut, D.1
Serrano, L.2
-
22
-
-
44149110851
-
Configurational entropy modulates the mechanical stability of protein GB1
-
Li, H., Wang, H. C., Cao, Y., Sharma, D., and Wang, M. (2008) Configurational entropy modulates the mechanical stability of protein GB1 J. Mol. Biol. 379, 871-880
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 871-880
-
-
Li, H.1
Wang, H.C.2
Cao, Y.3
Sharma, D.4
Wang, M.5
-
23
-
-
0032548947
-
Directing sequence-specific proteolysis to new targets. The influence of loop size and target sequence on selective proteolysis by tissue-type plasminogen activator and urokinase-type plasminogen activator
-
DOI 10.1074/jbc.273.8.4323
-
Coombs, G. S., Bergstrom, R. C., Madison, E. L., and Corey, D. R. (1998) Directing sequence-specific proteolysis to new targets. The influence of loop size and target sequence on selective proteolysis by tissue-type plasminogen activator and urokinase-type plasminogen activator J. Biol. Chem. 273, 4323-4328 (Pubitemid 28103166)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.8
, pp. 4323-4328
-
-
Coombs, G.S.1
Bergstrom, R.C.2
Madison, E.L.3
Corey, D.R.4
-
24
-
-
0029875848
-
Sequence requirements in the reactive-center loop of plasminogen- activator inhibitor-1 for recognition of plasminogen activators
-
Tucker, H. M. and Gerard, R. D. (1996) Sequence requirements in the reactive-center loop of plasminogen-activator inhibitor-1 for recognition of plasminogen activators Eur. J. Biochem. 237, 180-187 (Pubitemid 26110288)
-
(1996)
European Journal of Biochemistry
, vol.237
, Issue.1
, pp. 180-187
-
-
Tucker, H.M.1
Gerard, R.D.2
-
25
-
-
0025912338
-
Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors
-
Hubbard, S. J., Campbell, S. F., and Thornton, J. M. (1991) Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors J. Mol. Biol. 220, 507-530
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 507-530
-
-
Hubbard, S.J.1
Campbell, S.F.2
Thornton, J.M.3
-
26
-
-
0022982251
-
Degradation of proteins microinjected in HeLa cells. The role of substrate flexibility
-
Rote, K. V. and Rechsteiner, M. (1986) Degradation of proteins microinjected into HeLa cells. The role of substrate flexibility J. Biol. Chem. 261, 15430-15436 (Pubitemid 17208762)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.33
, pp. 15430-15436
-
-
Rote, K.V.1
Rechsteiner, M.2
-
27
-
-
0034611591
-
Conformational selection of inhibitors and substrates by proteolytic enzymes: Implications for drug design and polypeptide processing
-
DOI 10.1021/jm990315t
-
Fairlie, D. P., Tyndall, J. D., Reid, R. C., Wong, A. K., Abbenante, G., Scanlon, M. J., March, D. R., Bergman, D. A., Chai, C. L., and Burkett, B. A. (2000) Conformational selection of inhibitors and substrates by proteolytic enzymes: Implications for drug design and polypeptide processing J. Med. Chem. 43, 1271-1281 (Pubitemid 30212569)
-
(2000)
Journal of Medicinal Chemistry
, vol.43
, Issue.7
, pp. 1271-1281
-
-
Fairlie, D.P.1
Tyndall, J.D.A.2
Reid, R.C.3
Wong, A.K.4
Abbenante, G.5
Scanlon, M.J.6
March, D.R.7
Bergman, D.A.8
Chai, C.L.L.9
Burkett, B.A.10
-
28
-
-
17244364283
-
Proteases universally recognize beta strands in their active sites
-
DOI 10.1021/cr040669e
-
Tyndall, J. D., Nall, T., and Fairlie, D. P. (2005) Proteases universally recognize β strands in their active sites Chem. Rev. 105, 973-999 (Pubitemid 40527381)
-
(2005)
Chemical Reviews
, vol.105
, Issue.3
, pp. 973-999
-
-
Tyndall, J.D.A.1
Nall, T.2
Fairlie, D.P.3
-
29
-
-
67649587108
-
Cooperative effects in the substrate specificity of the complement protease, C1s
-
Boyd, S. E., Kerr, F. K., Albrecht, D. W., de la Banda, M. G., Ng, N., and Pike, R. N. (2009) Cooperative effects in the substrate specificity of the complement protease, C1s Biol. Chem. 390, 503-507
-
(2009)
Biol. Chem.
, vol.390
, pp. 503-507
-
-
Boyd, S.E.1
Kerr, F.K.2
Albrecht, D.W.3
De La Banda, M.G.4
Ng, N.5
Pike, R.N.6
-
30
-
-
0027050807
-
The refined 1.9-Å X-ray crystal structure of D-Phe-Pro-Arg chloromethylketone-inhibited human α-thrombin: Structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships
-
Bode, W., Turk, D., and Karshikov, A. (1992) The refined 1.9-Å crystal structure of d -Phe-Pro-Arg chloromethylketone-inhibited human α-thrombin: Structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships Protein Sci. 1, 426-471 (Pubitemid 23016868)
-
(1992)
Protein Science
, vol.1
, Issue.4
, pp. 426-471
-
-
Bode, W.1
Turk, D.2
Karshikov, A.3
-
31
-
-
0024431034
-
The refined 1.9 Å crystal structure of human α-thrombin: Interaction with D-Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment
-
Bode, W., Mayr, I., Baumann, U., Huber, R., Stone, S. R., and Hofsteenge, J. (1989) The refined 1.9 Å crystal structure of human α-thrombin: Interaction with d -Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment EMBO J. 8, 3467-3475 (Pubitemid 19273577)
-
(1989)
EMBO Journal
, vol.8
, Issue.11
, pp. 3467-3475
-
-
Bode, W.1
Mayr, I.2
Baumann, U.3
Huber, R.4
Stone, S.R.5
Hofsteenge, J.6
|