Interfacial orientation and secondary structure change in tachyplesin I: Molecular dynamics and sum frequency generation spectroscopy studies

Langmuir

Volumn 27, Issue 23, 2011, Pages 14343-14351

  Boughton, Andrew P ^a   Nguyen, Khoi ^a,b   Andricioaei, Ioan ^c   Chen, Zhan ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b INTERNATIONAL UNIVERSITY   (Viet Nam)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATR FTIR; ATTENUATED TOTAL REFLECTANCE FOURIER TRANSFORM INFRARED; DISULFIDE BONDS; EXPERIMENTAL MEASUREMENTS; IN-SITU; INTERFACIAL ORIENTATION; INTERFACIAL STRUCTURES; LOCAL DEVIATION; MOLECULAR DYNAMICS SIMULATIONS; POLYSTYRENE/WATER INTERFACE; PRIOR KNOWLEDGE; PROTEIN STRUCTURES; SECONDARY STRUCTURES; STRUCTURAL DEFORMATION; SUM FREQUENCY GENERATION; SUM-FREQUENCY GENERATION SPECTROSCOPY; TACHYPLESIN; TWIST ANGLES; VIBRATIONAL SPECTROSCOPIC MEASUREMENTS;

ADDITIVES; COVALENT BONDS; DEFORMATION; DYNAMICS; MOLECULAR DYNAMICS; PEPTIDES; POLYSTYRENES;

MOLECULAR ORIENTATION;

ANTIMICROBIAL CATIONIC PEPTIDE; CYCLOPEPTIDE; DNA BINDING PROTEIN; TACHYPLESIN PEPTIDE, TACHYPLEUS TRIDENTATUS;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; INFRARED SPECTROPHOTOMETRY; MOLECULAR DYNAMICS; PROTEIN SECONDARY STRUCTURE;

ANTIMICROBIAL CATIONIC PEPTIDES; DNA-BINDING PROTEINS; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; PEPTIDES, CYCLIC; PROTEIN STRUCTURE, SECONDARY; SPECTROPHOTOMETRY, INFRARED;

EID: 82455191715     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la203192c     Document Type: Article

References (74)

1. Gray, J. J. Curr. Opin. Struct. Biol. 2004, 14, 110-115
2. Yebra, D. M.; Kiil, S.; Dam-Johansen, K. Prog. Org. Coat. 2004, 50, 75-104
3. Lee, J. M.; Park, H. K.; Jung, Y.; Kim, J. K.; Jung, S. O.; Chung, B. H. Anal. Chem. 2007, 79, 2680-2687
4. Holland-Nell, K.; Beck-Sickinger, A. G. ChemBioChem 2007, 8, 1071-1076
5. Tamm, L. K.; Tatulian, S. A. Q. Rev. Biophys. 1997, 30, 365-429
6. Barth, A.; Zscherp, C. Q. Rev. Biophys. 2002, 35, 369-430
7. Laederach, A.; Andreotti, A. H.; Fulton, D. B. Biochemistry 2002, 41, 12359-12368
8. Whitmore, L.; Wallace, B. A. Biopolymers 2008, 89, 392-400
9. Wang, J.; Buck, S. M.; Even, M. A.; Chen, Z. J. Am. Chem. Soc. 2002, 124, 13302-13305
10. Wang, J.; Clarke, M. L.; Zhang, Y.; Chen, X.; Chen, Z. Langmuir 2003, 19, 7862-7866
11. Wang, J.; Even, M. A.; Chen, X.; Schmaier, A. H.; Waite, J. H.; Chen, Z. J. Am. Chem. Soc. 2003, 125, 9914-9915
12. Chen, X.; Wang, J.; Sniadecki, J. J.; Even, M. A.; Chen, Z. Langmuir 2005, 21, 2662-2664
13. Wang, J.; Clarke, M. L.; Chen, X.; Even, M. A.; Johnson, W. C.; Chen, Z. Surf. Sci. 2005, 587, 1-11
14. Wang, J.; Paszti, Z.; Clarke, M. L.; Chen, X.; Chen, Z. J. Phys. Chem. B 2007, 111, 6088-6095
15. Wang, J.; Lee, S.-H.; Chen, Z. J. Phys. Chem. B 2008, 112, 2281-2290
16. Nguyen, K. T.; Le Clair, S. V.; Ye, S.; Chen, Z. J. Phys. Chem B 2009, 113, 12169-12180
17. Nguyen, K. T.; King, J. T.; Chen, Z. J. Phys. Chem. B 2010, 114, 8291-8300
18. Boughton, A. P.; Andricioaei, I.; Chen, Z. Langmuir 2010, 26, 16031-16036
19. Chen, Z.; Ward, R.; Tian, Y.; Malizia, F.; Gracias, D. H.; Shen, Y. R.; Somorjai, G. A. J. Biomed. Mater. Res. 2002, 62, 254-264
20. Mermut, O.; Phillips, D. C.; York, R. L.; McCrea, K. R.; Ward, R. S.; Somorjai, G. A. J. Am. Chem. Soc. 2006, 128, 3598-3607
21. Phillips, D. C.; York, R. L.; Mermut, O.; McCrea, K. R.; Ward, R. S.; Somorjai, G. A. J. Phys. Chem. C 2007, 111, 255-261
22. York, R. L.; Browne, W. K.; Geissler, P. L.; Somorjai, G. A. Isr. J. Chem. 2007, 47, 51-58
23. Weidner, T.; Apte, J. S.; Gamble, L. J.; Castner, D. G. Langmuir 2010, 26, 3433-3440
24. Baugh, L.; Weidner, T.; Baio, J. E.; Nguyen, P.-C.; Gamble, L. J.; Stayton, P. S.; Castner, D. G. Langmuir 2010, 26, 16434-16441
25. Fu, L.; Ma, G.; Yan, E. C. J. Am. Chem. Soc. 2010, 132, 5405-5412
26. Anglin, T. C.; Liu, J.; Conboy, J. C. Biophys. J. 2007, 92, L01-3
27. Anglin, T. C.; Brown, K. L.; Conboy, J. C. J. Struct. Biol. 2009, 168, 37-52
28. Jung, S. Y.; Lim, S. M.; Albertorio, F.; Kim, G.; Gurau, M. C.; Yang, R. D.; Holden, M. A.; Cremer, P. S. J. Am. Chem. Soc. 2003, 125, 12782-12786
29. Chen, X.; Sagle, L. B.; Cremer, P. S. J. Am. Chem. Soc. 2007, 129, 15104-15105
30. Hall, S. A.; Jena, K. C.; Trudeau, T. G.; Hore, D. K. J. Phys. Chem. C 2011, 110516065918031
31. Wang, J.; Paszti, Z.; Even, M. A.; Chen, Z. J. Phys. Chem. B 2004, 108, 3625-3632
32. Ye, S.; Nguyen, K. T.; Chen, Z. J. Phys. Chem. B 2010, 114, 3334-3340
33. Pauling, L.; Corey, R. B. Proc. Natl. Acad. Sci. U.S.A. 1951, 37, 251-256
34. Pauling, L.; Corey, R. B. Proc. Natl. Acad. Sci. U.S.A. 1951, 37, 729-740
35. Pauling, L.; Corey, R. B. Proc. Natl. Acad. Sci. U.S.A. 1953, 39, 247-252
36. Wang, J.; Chen, X.; Clarke, M. L.; Chen, Z. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 4978-4983
37. Oishi, O.; Yamashita, S.; Nishimoto, E.; Lee, S.; Sugihara, G.; Ohno, M. Biochemistry 1997, 36, 4352-4359
38. Matsuzaki, K.; Shioyama, T.; Okamura, E.; Umemura, J.; Takenaka, T.; Takaishi, Y.; Fujita, T.; Miyajima, K. Biochim. Biophys. Acta 1991, 1070, 419-428
39. Rodionova, N. A.; Tatulian, S. A.; Surrey, T.; Jaehnig, F.; Tamm, L. K. Biochemistry 1995, 34, 1921-1929
40. Marsh, D. Biophys. J. 1997, 72, 2710-2718
41. Páli, T.; Marsh, D. Biophys. J. 2001, 80, 2789-2797
42. Chothia, C. J. Mol. Biol. 1973, 75, 295-302
43. Salemme, F. J. Mol. Biol. 1981, 146, 143-156
44. Salemme, F. R. Prog. Biophys. Mol. Biol. 1983, 42, 95-133
45. Nesloney, C. Bioorg. Med. Chem. 1996, 4, 739-766
46. Wang, L.; O'Connell, T.; Tropsha, A.; Hermans, J. J. Mol. Biol. 1996, 262, 283-293
47. Collier, G.; Vellore, N. A.; Latour, R. A.; Stuart, S. J. Biointerphases 2009, 4, 57-64
48. Sun, Y.; Dominy, B. N.; Latour, R. A. J. Comput. Chem. 2007, 28, 1883-1892
49. Sun, Y.; Welsh, W. J.; Latour, R. A. Langmuir 2005, 21, 5616-5626
50. Vellore, N. A.; Yancey, J. A.; Collier, G.; Latour, R. A.; Stuart, S. J. Langmuir 2010, 26, 7396-7404
51. Wang, Q.; Zhao, C.; Zhao, J.; Wang, J.; Yang, J. C.; Yu, X.; Zheng, J. Langmuir 2010, 26, 3308-3316
52. He, Y.; Hower, J.; Chen, S.; Bernards, M. T.; Chang, Y.; Jiang, S. Langmuir 2008, 24, 10358-10364
53. Kandasamy, S. K.; Larson, R. G. Chem. Phys. Lipids 2004, 132, 113-132
54. Lee, H.; Larson, R. G. Molecules 2009, 14, 423-438
55. Wei, Y.; Latour, R. A. Langmuir 2009, 25, 5637-5646
56. Vallone, B.; Miele, A. E.; Vecchini, P.; Chiancone, E.; Brunori, M. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 6103-6107
57. Chipot, C.; Maigret, B.; Pohorille, A. Proteins: Struct., Funct., Bioinf. 1999, 36, 383-399
58. Brooks, B.; Bruccoleri, R.; Olafson, B.; States, D.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187-217
59. MacKerell, A. D., Jr.; Bashford, D.; Bellott, M.; Dunbrack, R. L., Jr.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E., III; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiórkiewicz-Kuczera, J.; Yin, D.; Karplus, M. J. Phys. Chem. B 1998, 102, 3586-3616
60. Matsuzaki, K.; Nakayama, M.; Fukui, M.; Otaka, A.; Funakoshi, S.; Fujii, N.; Bessho, K.; Miyajima, K. Biochemistry 1993, 32, 11704-11710
61. Humphrey, W. J. Mol. Graphics 1996, 14, 33-38
62. Frishman, D.; Argos, P. Proteins 1995, 23, 566-579
63. Lee, B.; Richards, F. M. J. Mol. Biol. 1971, 55, 379-400
64. Yang, A. S.; Honig, B. J. Mol. Biol. 1995, 252, 366-376
65. Lambert, A.; Davies, P.; Neivandt, D. Appl. Spectrosc. Rev. 2005, 40, 103-145
66. Zhuang, X.; Miranda, P. B.; Kim, D.; Shen, Y. R. Phys. Rev. B 1999, 59, 12632-12640
67. Hecht, E. Optics, 4 th ed.; Addison Wesley: Boston, MA, 2001.
68. Zbinden, R. Infrared Spectroscopy of High Polymers; Academic Press: New York, 1964.
69. Ramakrishnan, M.; Qu, J.; Pocanschi, C. L.; Kleinschmidt, J. H.; Marsh, D. Biochemistry 2005, 44, 3515-3523
70. Miyazawa, T. J. Chem. Phys. 1960, 32, 1647-1652
71. Hu, X.; Shin, K.; Rafailovich, M.; Sokolov, J.; Stein, R.; Chan, Y.; Wlwu, K. W.; Wu, W. L.; Kolb, R. High Perform. Polym. 2000, 12, 621-629
72. Malitson, I. H. Appl.Opt. 1963, 2, 1103-1107
73. CRC Handbook of Chemistry and Physics, 91 st ed.; CRC Press: New York, 2010.
74. Boughton, A. P.; Yang, P; Tesmer, V; Ding, B; Tesmer, J. J. G.; Chen, Z. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, E667-E673