Dichroic ratios in polarized Fourier transform infrared for nonaxial symmetry of β-sheet structures

Biophysical Journal

Volumn 72, Issue 6, 1997, Pages 2710-2718

  Marsh, Derek ^a  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

OUTER MEMBRANE PROTEIN; PORIN;

ARTICLE; ESCHERICHIA COLI; FOURIER TRANSFORMATION; LINEAR DICHROISM; NONHUMAN; PROTEIN LIPID INTERACTION; PROTEIN SECONDARY STRUCTURE;

EID: 0030928208     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(97)78914-8     Document Type: Article

References (34)

1. Aggeli, A., N. Boden, Y.-L. Cheng, J. B. C. Findlay, P. F. Knowles, P. Kovatchev, P. J. H. Turnbull, L. I. Horváth, and D. Marsh. 1996. Peptides modelled on the transmembrane region of the slow voltage-gated IsK potassium channel: structural characterization of peptide assemblies in the β-strand conformation. Biochemistry. 35:16213-16221.
2. Arkin, I. T., M. Rothman, C. F. C. Ludlam, S. Aimoto, D. M. Engelman, K. J. Rothschild, and S. O. Smith. 1995. Structural model of the phospholamban ion channel complex in phospholipid membranes. J. Mol. Biol. 248:824-834.
3. Axelsen, P. H., B. K. Kaufman, R. N. McElhaney, and R. N. A. H. Lewis. 1995. The infrared dichroism of transmembrane helical polypeptides. Biophys. J. 69:2770-2781.
4. Bandekar, J., and S. Krimm. 1988. Vibrational spectrum of the parallel-chain β-sheet. Biopolymers. 27:909-921.
5. Bradbury, E. M., L. Brown, A. R. Downie, A. Elliot, R. D. B. Fraser, and W. E. Handby. 1962. The structure of the co-form of poly-β-benzyl-L-aspartate. J. Mol. Biol. 5:230-247.
6. Chirgadze, Yu. N., and N. A. Nevskaya. 1976a. Infrared spectra and resonance interaction of amide-I vibration of the parallel-chain pleated sheet. Biopolymers. 15:627-636.
7. Chirgadze, Yu. N., and N. A. Nevskaya. 1976b. Infrared spectra and resonance interaction of amide-I vibration of the antiparallel-chain pleated sheet. Biopolymers. 15:607-625.
8. Cowan, S. W., T. Schirmer, G. Rummel, M. Steiert, R. Ghosh, R. A. Pauptit, J. N. Jansonius, and J. P. Rosenbusch. 1992. Crystal structures explain functional properties of two E. coli porins. Nature. 358:727-733.
9. Fraser, R. D. B., and T. P. MacRae. 1973. Conformation in Fibrous Proteins and Related Synthetic Peptides. Academic Press, New York.
10. Fraser, R. D. B., and E. Suzuki. 1970. A quantitative study of the amide I vibrations in the infra-red spectrum of β-keratin. Spectrochim. Acta. 26A:423-426.
11. Frey, S., and L. K. Tamm. 1991. Orientation of melittin in phospholipid bilayers. A polarized attenuated total reflection infrared study. Biophys. J. 60:922-930.
12. Goormaghtigh, E., V. Cabiaux, and J.-M. Ruysschaert. 1990. Secondary structure and dosage of soluble and membrane proteins by attenuated total reflection Fourier-transform infrared spectroscopy on hydrated films. Eur. J. Biochem. 193:409-420.
13. Görne-Tschelnokow, U., A. Strecker, C. Kaduk, D. Naumann, and F. Hucho. 1994. The transmembrane domains of the nicotinic acetylcholine receptor contain α-helical and β structures. EMBO J. 13:338-391.
14. Harrick, N. J. 1967. Internal Reflection Spectroscopy. Wiley, New York.
15. + channel-associated peptide in a lipid bilayer: conformation, lipid-protein interactions, and rotational diffusion. Biochemistry. 34:3964-3971.
16. Krimm, S., and Y. Abe. 1972. Intermolecular effects in the amide I vibrations of β polypeptides. Proc. Natl. Acad. Sci. USA. 69:2788-2792.
17. Krimm, S., and J. Bandekar. 1986. Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins. Adv. Protein Chem. 38:181-364.
18. Manella, C. A., M. Forte, and M. Columbini. 1992. Toward the molecular structure of the mitochondrial channel, VDAC. J. Bioenerg. Biomembr. 24:7-19.
19. Marsh, D. 1996. Peptide models for membrane channels. Biochem. J. 315:345-361.
20. Miyazawa, T. 1960. Perturbation treatment of the characteristic vibrations of polypeptide chains in various configurations. J. Chem. Phys. 32: 1647-1652.
21. Miyazawa, T., and E. R. Blout. 1961. The infrared spectra of polypeptides in various conformations: amide I and amide II bands. J. Am. Chem. Soc. 83:712-719.
22. Nabedryk, E., and J. Breton. 1981. Orientation of intrinsic proteins in photosynthetic membranes. Polarized infrared spectroscopy of chloroplasts and chromatophores. Biochim. Biophys. Acta. 635:515-524.
23. Nabedryk, E., R. M. Garavito, and J. Breton. 1988. The orientation of β-sheets in porin. A polarized Fourier transform infrared spectroscopic investigation. Biophys. J. 53:671-676.
24. Nevskaya, N. A., and Yu. N. Chirgadze. 1976. Infrared spectra and resonance interaction of amide I and amide II vibrations of α-helix. Biopolymers. 15:637-648.
25. Rodionova, N. A., S. A. Tatulian, T. Surrey, F. Jähnig, and L. K. Tamm. 1995. Characterization of two membrane-bound forms of OmpA. Biochemistry. 34:1921-1929.
26. Rothschild, K. J., and N. A. Clark. 1979. Polarized infrared spectroscopy of the purple membrane. Biophys. J. 25:473-488.
27. Rothschild, K. J., R. Sanches, T. L. Hsiao, and N. A. Clark. 1980. A spectroscopic study of rhodopsin alpha-helix orientation. Biophys. J. 31:53-64.
28. Suzuki, E. 1967. A quantitative study of the amide vibrations in the infra-red spectrum of silk fibroin. Spectrochim. Acta. 23A:2303-2308.
29. Takumi, T., H. Ohkubo, and S. Nakanishi. 1988. Cloning of a membrane protein that induces a slow voltage-gated potassium current. Science 242:1042-1045.
30. Tsuboi, M. 1962. Infrared dichroism and molecular conformation of α-form poly-γ-benzyl-L-glutamate. J. Polym. Sci. 59:139-153.
31. Unwin, N. 1993. Nicotinic acetylcholine receptor at 9 Å resolution. J. Mol. Biol. 229:1101-1124.
32. +-ATPase and its membrane-associated proteolytic peptides. J. Biol. Chem. 270: 17685-17696.
33. Weiss, M. S., T. Wacker, J. Weckesser, W. Weite, and G. E. Schulz. 1990. The three-dimensional structure of porin from Rhodobacter capsulatus at 3 Å resolution. FEBS Lett. 267:268-272.
34. Zbinden, R. 1964. Infrared Spectroscopy of High Polymers. Academic Press, New York.