메뉴 건너뛰기




Volumn 35, Issue SUPPL. 1, 2011, Pages

Analysis of exome sequences with and without incorporating prior biological knowledge

Author keywords

Association analysis; Bayesian network; Biological information; Population structure; Rare variant; Receiver operating characteristic; Risk prediction model

Indexed keywords

AGE DISTRIBUTION; ARTICLE; BAYESIAN LEARNING; DISEASE PREDISPOSITION; EXOME; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC TRAIT; GENETIC VARIABILITY; HUMAN; POPULATION STRUCTURE; RECEIVER OPERATING CHARACTERISTIC; RISK ASSESSMENT; SEQUENCE ANALYSIS; SEX DIFFERENCE; SINGLE NUCLEOTIDE POLYMORPHISM; SMOKING;

EID: 82455172162     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20649     Document Type: Article
Times cited : (5)

References (33)
  • 3
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont MA, Rannala B. 2004. The Bayesian revolution in genetics. Nat Rev Genet 5:251-261.
    • (2004) Nat Rev Genet , vol.5 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57:289-300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 78649522135 scopus 로고    scopus 로고
    • Using biological knowledge to discover higher order interactions in genetic association studies
    • Chen GK, Thomas DC. 2010. Using biological knowledge to discover higher order interactions in genetic association studies. Genet Epidemiol 34:863-878.
    • (2010) Genet Epidemiol , vol.34 , pp. 863-878
    • Chen, G.K.1    Thomas, D.C.2
  • 6
    • 34547788766 scopus 로고    scopus 로고
    • Enriching the analysis of genome-wide association studies with hierarchical modeling
    • Chen GK, Witte JS. 2007. Enriching the analysis of genome-wide association studies with hierarchical modeling. Am J Hum Genet 81:397-404.
    • (2007) Am J Hum Genet , vol.81 , pp. 397-404
    • Chen, G.K.1    Witte, J.S.2
  • 7
    • 82455192533 scopus 로고    scopus 로고
    • Statistical analysis of rare sequence variants: an overview of collapsing methods
    • this issue.
    • Dering C, Pugh E, Ziegler A. 2011. Statistical analysis of rare sequence variants: an overview of collapsing methods. Genet Epidemiol, this issue.
    • (2011) Genet Epidemiol
    • Dering, C.1    Pugh, E.2    Ziegler, A.3
  • 8
    • 79958077854 scopus 로고    scopus 로고
    • Detecting rare and common variants for complex traits: sibpair and odds ratio weighted sum statistics (SPWSS, ORWSS)
    • Feng T, Elston RC, Zhu X. 2000. Detecting rare and common variants for complex traits: sibpair and odds ratio weighted sum statistics (SPWSS, ORWSS). Genet Epidemiol. 35:398-409.
    • (2000) Genet Epidemiol. , vol.35 , pp. 398-409
    • Feng, T.1    Elston, R.C.2    Zhu, X.3
  • 9
    • 0033926130 scopus 로고    scopus 로고
    • Linkage disequilibrium and allele-frequency distributions for 114 single-nucleotide polymorphisms in five populations
    • Goddard KA, Hopkins PJ, Hall JM, Witte JS. 2000. Linkage disequilibrium and allele-frequency distributions for 114 single-nucleotide polymorphisms in five populations. Am J Hum Genet 66:216-234.
    • (2000) Am J Hum Genet , vol.66 , pp. 216-234
    • Goddard, K.A.1    Hopkins, P.J.2    Hall, J.M.3    Witte, J.S.4
  • 10
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings WK. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57:97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 11
    • 79959462191 scopus 로고    scopus 로고
    • Exploration of empirical Bayes hierarchical modeling for the analysis of genome-wide association study data
    • Heron EA, O'Dushlaine C, Segurado R, Gallagher L, Gill M. 2007. Exploration of empirical Bayes hierarchical modeling for the analysis of genome-wide association study data. Biostatistics 12:445-461.
    • (2007) Biostatistics , vol.12 , pp. 445-461
    • Heron, E.A.1    O'Dushlaine, C.2    Segurado, R.3    Gallagher, L.4    Gill, M.5
  • 13
    • 65249164859 scopus 로고    scopus 로고
    • Validating, augmenting, and refining genome-wide association signals
    • Ioannidis JP, Thomas G, Daly MJ. 2009. Validating, augmenting, and refining genome-wide association signals. Nat Rev Genet 10:318-329.
    • (2009) Nat Rev Genet , vol.10 , pp. 318-329
    • Ioannidis, J.P.1    Thomas, G.2    Daly, M.J.3
  • 14
    • 82455183179 scopus 로고    scopus 로고
    • Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data
    • Kang J, Zheng W, Li L, Lee JS, Yan X, Zhao HY. 2011. Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data. BMC Proc 5:S37.
    • (2011) BMC Proc , vol.5
    • Kang, J.1    Zheng, W.2    Li, L.3    Lee, J.S.4    Yan, X.5    Zhao, H.Y.6
  • 15
    • 38049023107 scopus 로고    scopus 로고
    • Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation
    • Lewinger JP, Conti DV, Baurley JW, Triche TJ, Thomas DC. 2007. Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation. Genet Epidemiol 31:871-882.
    • (2007) Genet Epidemiol , vol.31 , pp. 871-882
    • Lewinger, J.P.1    Conti, D.V.2    Baurley, J.W.3    Triche, T.J.4    Thomas, D.C.5
  • 16
    • 50949095168 scopus 로고    scopus 로고
    • Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data
    • Li BS, Leal SM. 2008. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 83:311-321.
    • (2008) Am J Hum Genet , vol.83 , pp. 311-321
    • Li, B.S.1    Leal, S.M.2
  • 17
    • 82455200164 scopus 로고    scopus 로고
    • Using the posterior distribution of deviance to measure evidence of association for rare susceptibility variants
    • Lorenzo Bermejo J, Beckmann L, Chang-Claude J, Fischer C. 2011. Using the posterior distribution of deviance to measure evidence of association for rare susceptibility variants. BMC Proc 5:S38.
    • (2011) BMC Proc , vol.5
    • Lorenzo Bermejo, J.1    Beckmann, L.2    Chang-Claude, J.3    Fischer, C.4
  • 18
    • 61449168010 scopus 로고    scopus 로고
    • A groupwise association test for rare mutations using a weighted sum statistic
    • Madsen B, Browning S. 2009. A groupwise association test for rare mutations using a weighted sum statistic. PLoS Genet 5:e1000384.
    • (2009) PLoS Genet , vol.5
    • Madsen, B.1    Browning, S.2
  • 21
    • 0034973984 scopus 로고    scopus 로고
    • High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence
    • Rannala B, Reeve JP. 2001. High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence. Am J Hum Genet 69:159-178.
    • (2001) Am J Hum Genet , vol.69 , pp. 159-178
    • Rannala, B.1    Reeve, J.P.2
  • 22
    • 82455183181 scopus 로고    scopus 로고
    • Rare variant density across the genome and across populations
    • Raska P, Zhu X. 2011. Rare variant density across the genome and across populations. BMC Proc 5:S39.
    • (2011) BMC Proc , vol.5
    • Raska, P.1    Zhu, X.2
  • 23
    • 3442879338 scopus 로고    scopus 로고
    • Assessing the function of genetic variants in candidate gene association studies
    • Rebbeck TR, Spitz M, Wu X. 2004. Assessing the function of genetic variants in candidate gene association studies. Nat Rev Genet 5:589-594.
    • (2004) Nat Rev Genet , vol.5 , pp. 589-594
    • Rebbeck, T.R.1    Spitz, M.2    Wu, X.3
  • 24
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 25
    • 82455214951 scopus 로고    scopus 로고
    • Prioritizing single-nucleotide variations that potentially regulate alternative splicing
    • Teng M, Wang Y, Wang G, Jung J, Edenberg HJ, Sanford JR, Liu Y. 2011. Prioritizing single-nucleotide variations that potentially regulate alternative splicing. BMC Proc 5:S40.
    • (2011) BMC Proc , vol.5
    • Teng, M.1    Wang, Y.2    Wang, G.3    Jung, J.4    Edenberg, H.J.5    Sanford, J.R.6    Liu, Y.7
  • 26
    • 82455194299 scopus 로고    scopus 로고
    • Comparison of SNP-based and gene-based association studies in detecting rare variants using unrelated individuals
    • Tong L, Tayo B, Yang J, Cooper RS. 2011. Comparison of SNP-based and gene-based association studies in detecting rare variants using unrelated individuals. BMC Proc 5:S41.
    • (2011) BMC Proc , vol.5
    • Tong, L.1    Tayo, B.2    Yang, J.3    Cooper, R.S.4
  • 27
  • 28
    • 79951997040 scopus 로고    scopus 로고
    • Adjustment for local ancestry in genetic association analysis of admixed populations
    • Wang X, Zhu X, Qin H, Cooper RS, Ewens WJ, Li C, Li M. 2011 Adjustment for local ancestry in genetic association analysis of admixed populations. Bioinformatics 27:670-677.
    • (2011) Bioinformatics , vol.27 , pp. 670-677
    • Wang, X.1    Zhu, X.2    Qin, H.3    Cooper, R.S.4    Ewens, W.J.5    Li, C.6    Li, M.7
  • 29
    • 82455214950 scopus 로고    scopus 로고
    • Collapsing ROC approach for risk prediction research on both common and rare variants
    • Wei C, Lu Q. 2011. Collapsing ROC approach for risk prediction research on both common and rare variants. BMC Proc 5:S42.
    • (2011) BMC Proc , vol.5
    • Wei, C.1    Lu, Q.2
  • 31
    • 82455170532 scopus 로고    scopus 로고
    • Region-based and pathway-based QTL mapping using a P-value combination method
    • Yang HC, Chen CW. 2011. Region-based and pathway-based QTL mapping using a P-value combination method. BMC Proc 5:S43.
    • (2011) BMC Proc , vol.5
    • Yang, H.C.1    Chen, C.W.2
  • 32
    • 79960749427 scopus 로고    scopus 로고
    • A nonparametric method for building predictive genetic tests on high-dimensional data
    • Ye C, Cui Y, Wei C, Elston RC, Zhu J, Lu Q. 2011. A nonparametric method for building predictive genetic tests on high-dimensional data. Hum Hered 71:161-170.
    • (2011) Hum Hered , vol.71 , pp. 161-170
    • Ye, C.1    Cui, Y.2    Wei, C.3    Elston, R.C.4    Zhu, J.5    Lu, Q.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.