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Volumn 12, Issue 3, 2010, Pages 679-688

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; AMMONIA MONOOXYGENASE; OXIDOREDUCTASE; RNA 16S; SEA WATER;

EID: 77953940648     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2009.02108.x     Document Type: Article
Times cited : (174)

References (52)
  • 1
    • 57649114800 scopus 로고    scopus 로고
    • Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
    • Agogue, H., Brink, M., Dinasquet, J., and Herndl, G.J. (2008) Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456: 788-792.
    • (2008) Nature , vol.456 , pp. 788-792
    • Agogue, H.1    Brink, M.2    Dinasquet, J.3    Herndl, G.J.4
  • 2
    • 42049122119 scopus 로고    scopus 로고
    • Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
    • Beman, J.M., Popp, B.N., and Francis, C.A. (2008) Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J 2: 429-441.
    • (2008) ISME J , vol.2 , pp. 429-441
    • Beman, J.M.1    Popp, B.N.2    Francis, C.A.3
  • 3
    • 34249801778 scopus 로고    scopus 로고
    • Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation
    • Berube, P.M., Samudrala, R., and Stahl, D.A. (2007) Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation. J Bacteriol 189: 3935-3944.
    • (2007) J Bacteriol , vol.189 , pp. 3935-3944
    • Berube, P.M.1    Samudrala, R.2    Stahl, D.A.3
  • 4
    • 0000885453 scopus 로고
    • Comparison and evaluation of currently employed modifications of the Winkler method for determining dissolved oxygen is seawater: a NASCO report
    • Carritt, D.E., and Carpenter, J.H. (1966) Comparison and evaluation of currently employed modifications of the Winkler method for determining dissolved oxygen is seawater: a NASCO report. J Mar Res 24: 286-318.
    • (1966) J Mar Res , vol.24 , pp. 286-318
    • Carritt, D.E.1    Carpenter, J.H.2
  • 5
    • 25144513151 scopus 로고    scopus 로고
    • Temporal patterns of nitrogenase (nifH) gene expression in the oligotrophic North Pacific Ocean
    • Church, M.J., Short, C.M., Jenkins, B.D., Karl, D.M., and Zehr, J.P. (2005) Temporal patterns of nitrogenase (nifH) gene expression in the oligotrophic North Pacific Ocean. Appl Environ Microbiol 71: 5362-5370.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5362-5370
    • Church, M.J.1    Short, C.M.2    Jenkins, B.D.3    Karl, D.M.4    Zehr, J.P.5
  • 6
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • Delong, E.F. (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89: 5685-5689.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 7
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.U., et al. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5    Frigaard, N.U.6
  • 8
    • 0000571837 scopus 로고    scopus 로고
    • Nitrification in the euphotic zone as a source for nitrite, nitrate, and nitrous oxide at Station ALOHA
    • Dore, J.E., and Karl, D.M. (1996a) Nitrification in the euphotic zone as a source for nitrite, nitrate, and nitrous oxide at Station ALOHA. Limnol Oceanogr 41: 1619-1628.
    • (1996) Limnol Oceanogr , vol.41 , pp. 1619-1628
    • Dore, J.E.1    Karl, D.M.2
  • 9
    • 0029750009 scopus 로고    scopus 로고
    • Nitrite distributions and dynamics at station ALOHA
    • Dore, J.E., and Karl, D.M. (1996b) Nitrite distributions and dynamics at station ALOHA. Deep Sea Res II 43: 385-402.
    • (1996) Deep Sea Res II , vol.43 , pp. 385-402
    • Dore, J.E.1    Karl, D.M.2
  • 10
    • 0032487959 scopus 로고    scopus 로고
    • A large source of atmospheric nitrous oxide from subtropical North Pacific surface waters
    • Dore, J.E., Popp, B.N., Karl, D.M., and Sansone, F.J. (1998) A large source of atmospheric nitrous oxide from subtropical North Pacific surface waters. Nature 396: 63-66.
    • (1998) Nature , vol.396 , pp. 63-66
    • Dore, J.E.1    Popp, B.N.2    Karl, D.M.3    Sansone, F.J.4
  • 11
    • 52949110149 scopus 로고    scopus 로고
    • Ammonia-dependent differential regulation of the gene cluster that encodes ammonia monooxygenase in Nitrosococcus oceani ATCC 19707
    • El Sheikh, A.F., and Klotz, M.G. (2008) Ammonia-dependent differential regulation of the gene cluster that encodes ammonia monooxygenase in Nitrosococcus oceani ATCC 19707. Environ Microbiol 10: 3026-3035.
    • (2008) Environ Microbiol , vol.10 , pp. 3026-3035
    • El Sheikh, A.F.1    Klotz, M.G.2
  • 12
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammoniaoxidizing Archaea in water columns and sediments of the ocean
    • Francis, C.A., Roberts, K.J., Beman, J.M., Santoro, A.E., and Oakley, B.B. (2005) Ubiquity and diversity of ammoniaoxidizing Archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102: 14683-14688.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 13
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J.A., McCallum, K., and Davis, A.A. (1992) Novel major archaebacterial group from marine plankton. Nature 356: 148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 14
    • 0020219103 scopus 로고
    • A chemi-luminescent technique for the determination of nanomolar concentrations of nitrate and nitrite in seawater
    • Garside, C. (1982) A chemi-luminescent technique for the determination of nanomolar concentrations of nitrate and nitrite in seawater. Mar Chem 11: 159-167.
    • (1982) Mar Chem , vol.11 , pp. 159-167
    • Garside, C.1
  • 15
    • 84882884095 scopus 로고    scopus 로고
    • The marine nitrogen cycle: overview and challenges
    • Capone, D.G., Bronk, D.A., Mulholland, M.R., and Carpenter, E.J. (eds). Amsterdam, The Netherlands: Elsevier
    • Gruber, N. (2008) The marine nitrogen cycle: overview and challenges. In Nitrogen in the Marine Environment. Capone, D.G., Bronk, D.A., Mulholland, M.R., and Carpenter, E.J. (eds). Amsterdam, The Netherlands: Elsevier, pp. 1-50.
    • (2008) Nitrogen in the Marine Environment , pp. 1-50
    • Gruber, N.1
  • 16
    • 0029664181 scopus 로고    scopus 로고
    • Photoinhibition of marine nitrifying bacteria. 1. Wavelength-dependent response
    • Guerrero, M.A., and Jones, R.D. (1996) Photoinhibition of marine nitrifying bacteria. 1. Wavelength-dependent response. Mar Ecol Prog Ser 141: 183-192.
    • (1996) Mar Ecol Prog Ser , vol.141 , pp. 183-192
    • Guerrero, M.A.1    Jones, R.D.2
  • 18
    • 33646260901 scopus 로고    scopus 로고
    • Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
    • Hallam, S.J., Mincer, T.J., Schleper, C., Preston, C.M., Roberts, K., Richardson, P.M., et al. (2006b) Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4: 520-536.
    • (2006) PLoS Biol , vol.4 , pp. 520-536
    • Hallam, S.J.1    Mincer, T.J.2    Schleper, C.3    Preston, C.M.4    Roberts, K.5    Richardson, P.M.6
  • 21
    • 0016262982 scopus 로고
    • Photoinactivation of ammonia oxidation in Nitrosomonas
    • Hooper, A.B., and Terry, K.R. (1974) Photoinactivation of ammonia oxidation in Nitrosomonas. J Bacteriol 119: 899-906.
    • (1974) J Bacteriol , vol.119 , pp. 899-906
    • Hooper, A.B.1    Terry, K.R.2
  • 22
    • 84988146006 scopus 로고
    • Oceanic and estuarine ammonium oxidation - effects of light
    • Horrigan, S.G., and Springer, A.L. (1990) Oceanic and estuarine ammonium oxidation - effects of light. Limnol Oceanogr 35: 479-482.
    • (1990) Limnol Oceanogr , vol.35 , pp. 479-482
    • Horrigan, S.G.1    Springer, A.L.2
  • 23
    • 0026610274 scopus 로고
    • 2 labeling studies of the de novo synthesis of polypeptides by Nitrosomonas europaea during recovery from acetylene and light inactivation of ammonia monooxygenase
    • 2 labeling studies of the de novo synthesis of polypeptides by Nitrosomonas europaea during recovery from acetylene and light inactivation of ammonia monooxygenase. J Biol Chem 267: 1534-1545.
    • (1992) J Biol Chem , vol.267 , pp. 1534-1545
    • Hyman, M.R.1    Arp, D.J.2
  • 25
    • 0021613580 scopus 로고
    • Bacterial chemolithotrophy in the ocean is associated with sinking particles
    • Karl, D.M., Knauer, G.A., Martin, J.H., and Ward, B.B. (1984) Bacterial chemolithotrophy in the ocean is associated with sinking particles. Nature 309: 54-56.
    • (1984) Nature , vol.309 , pp. 54-56
    • Karl, D.M.1    Knauer, G.A.2    Martin, J.H.3    Ward, B.B.4
  • 26
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M.B., DeLong, E.F., and Karl, D.M. (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 29
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of an abyssal microbial community from 4000 m deep at Station ALOHA in the North Pacific Subtropical Gyre
    • Konstantinidis, K.T., Braff, J., Karl, D.M., and DeLong, E.F. (2009) Comparative metagenomic analysis of an abyssal microbial community from 4000 m deep at Station ALOHA in the North Pacific Subtropical Gyre. Appl Environ Microbiol 75: 5345-5355.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    DeLong, E.F.4
  • 32
    • 0029777724 scopus 로고    scopus 로고
    • Seasonal and interannual variations in photosynthetic carbon assimilation at Station ALOHA
    • Letelier, R.M., Dore, J.E., Winn, C.D., and Karl, D.M. (1996) Seasonal and interannual variations in photosynthetic carbon assimilation at Station ALOHA. Deep Sea Res II 43: 467-490.
    • (1996) Deep Sea Res II , vol.43 , pp. 467-490
    • Letelier, R.M.1    Dore, J.E.2    Winn, C.D.3    Karl, D.M.4
  • 33
    • 0035038404 scopus 로고    scopus 로고
    • A time-series assessment of the nitrogen cycle at BATS
    • Lipschultz, F. (2001) A time-series assessment of the nitrogen cycle at BATS. Deep Sea Res II 48: 1897-1924.
    • (2001) Deep Sea Res II , vol.48 , pp. 1897-1924
    • Lipschultz, F.1
  • 34
    • 49449099818 scopus 로고    scopus 로고
    • Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
    • Martin-Cuadrado, A.B., Rodriguez-Valera, F., Moreira, D., Alba, J.C., Ivars-Martinez, E., Henn, M.R., et al. (2008) Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions. ISME J 2: 865-886.
    • (2008) ISME J , vol.2 , pp. 865-886
    • Martin-Cuadrado, A.B.1    Rodriguez-Valera, F.2    Moreira, D.3    Alba, J.C.4    Ivars-Martinez, E.5    Henn, M.R.6
  • 35
    • 0034114417 scopus 로고    scopus 로고
    • A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
    • Massana, R., DeLong, E.F., and Pedros-Alio, C. (2000) A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl Environ Microbiol 66: 1777-1787.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1777-1787
    • Massana, R.1    DeLong, E.F.2    Pedros-Alio, C.3
  • 36
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer, T.J., Church, M.J., Taylor, L.T., Preston, C., Karl, D.M., and DeLong, E.F. (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9: 1162-1175.
    • (2007) Environ Microbiol , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 37
    • 0000047626 scopus 로고
    • 15N tracer studies of the primary nitrite maximum
    • 15N tracer studies of the primary nitrite maximum. J Mar Res 39: 203-226.
    • (1981) J Mar Res , vol.39 , pp. 203-226
    • Olson, R.J.1
  • 38
    • 0000047630 scopus 로고
    • Differential photoinhibition of marine nitrifying bacteria - a possible mechanism for the formation of the primary nitrite maximum
    • Olson, R.J. (1981b) Differential photoinhibition of marine nitrifying bacteria - a possible mechanism for the formation of the primary nitrite maximum. J Mar Res 39: 227-238.
    • (1981) J Mar Res , vol.39 , pp. 227-238
    • Olson, R.J.1
  • 39
    • 0033754312 scopus 로고    scopus 로고
    • Marine planktonic Archaea take up amino acids
    • Ouverney, C.C., and Fuhrman, J.A. (2000) Marine planktonic Archaea take up amino acids. Appl Environ Microbiol 66: 4829-4833.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4829-4833
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 41
    • 33748562796 scopus 로고    scopus 로고
    • Concentrations and uptake of nitrate and ammonium in the Atlantic Ocean between 60 degrees N and 50 degrees S
    • Rees, A.P., Woodward, E.M.S., and Joint, I. (2006) Concentrations and uptake of nitrate and ammonium in the Atlantic Ocean between 60 degrees N and 50 degrees S. Deep Sea Res II 53: 1649-1665.
    • (2006) Deep Sea Res II , vol.53 , pp. 1649-1665
    • Rees, A.P.1    Woodward, E.M.S.2    Joint, I.3
  • 42
    • 32944469326 scopus 로고    scopus 로고
    • Archaeal uptake of enantiomeric amino acids in the mesoand bathypelagic waters of the North Atlantic
    • Teira, E., van Aken, H., Veth, C., and Herndl, G.J. (2006a) Archaeal uptake of enantiomeric amino acids in the mesoand bathypelagic waters of the North Atlantic. Limnol Oceanogr 51: 60-69.
    • (2006) Limnol Oceanogr , vol.51 , pp. 60-69
    • Teira, E.1    van Aken, H.2    Veth, C.3    Herndl, G.J.4
  • 43
    • 33749466450 scopus 로고    scopus 로고
    • Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic
    • Teira, E., Lebaron, P., van Aken, H., and Herndl, G.J. (2006b) Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic. Limnol Oceanogr 51: 2131-2144.
    • (2006) Limnol Oceanogr , vol.51 , pp. 2131-2144
    • Teira, E.1    Lebaron, P.2    van Aken, H.3    Herndl, G.J.4
  • 44
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
    • Tourna, M., Freitag, T.E., Nicol, G.W., and Prosser, J.I. (2008) Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 10: 1357-1364.
    • (2008) Environ Microbiol , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3    Prosser, J.I.4
  • 45
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch, A.H., Leininger, S., Kletzin, A., Schuster, S.C., Klenk, H.P., and Schleper, C. (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
    • (2005) Environ Microbiol , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.P.5    Schleper, C.6
  • 46
    • 38149099894 scopus 로고    scopus 로고
    • Latitudinal trends of Crenarchaeota and Bacteria in the meso- and bathypelagic water masses of the Eastern North Atlantic
    • Varela, M.M., van Aken, H.M., Sintes, E., and Herndl, G.J. (2008) Latitudinal trends of Crenarchaeota and Bacteria in the meso- and bathypelagic water masses of the Eastern North Atlantic. Environ Microbiol 10: 110-124.
    • (2008) Environ Microbiol , vol.10 , pp. 110-124
    • Varela, M.M.1    van Aken, H.M.2    Sintes, E.3    Herndl, G.J.4
  • 47
    • 85014546157 scopus 로고
    • Nitrite metabolism in the euphotic layer of the central North Pacific Ocean
    • Wada, E., and Hattori, A. (1971) Nitrite metabolism in the euphotic layer of the central North Pacific Ocean. Limnol Oceanogr 16: 766-772.
    • (1971) Limnol Oceanogr , vol.16 , pp. 766-772
    • Wada, E.1    Hattori, A.2
  • 48
    • 0023495837 scopus 로고
    • Nitrogen transformations in the Southern California Bight
    • Ward, B.B. (1987) Nitrogen transformations in the Southern California Bight. Deep Sea Res I 34: 785-805.
    • (1987) Deep Sea Res I , vol.34 , pp. 785-805
    • Ward, B.B.1
  • 49
    • 0035151338 scopus 로고    scopus 로고
    • Nutrient distributions in an anticyclonic eddy in the northeast Atlantic Ocean, with reference to nanomolar ammonium concentrations
    • Woodward, E.M.S., and Rees, A.P. (2001) Nutrient distributions in an anticyclonic eddy in the northeast Atlantic Ocean, with reference to nanomolar ammonium concentrations. Deep Sea Res II 48: 775-793.
    • (2001) Deep Sea Res II , vol.48 , pp. 775-793
    • Woodward, E.M.S.1    Rees, A.P.2
  • 51
    • 34250896177 scopus 로고    scopus 로고
    • The significance of nitrification for oceanic new production
    • Yool, A., Martin, A.P., Fernandez, C., and Clark, D.R. (2007) The significance of nitrification for oceanic new production. Nature 447: 999-1002.
    • (2007) Nature , vol.447 , pp. 999-1002
    • Yool, A.1    Martin, A.P.2    Fernandez, C.3    Clark, D.R.4


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