메뉴 건너뛰기




Volumn 17, Issue 12, 2011, Pages 2235-2248

Ribosomal RNA processing in Candida albicans

Author keywords

23S pre rRNA; Candida albicans; rRNA processing; U3 snoRNA

Indexed keywords

EXTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; RIBOSOME RNA; SMALL NUCLEOLAR RNA; UNCLASSIFIED DRUG;

EID: 81755162781     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.028050.111     Document Type: Article
Times cited : (18)

References (53)
  • 3
    • 2942589271 scopus 로고    scopus 로고
    • Identification of an exoribonuclease homolog, CaKEM1/CaXRN1, in Candida albicans and its characterization in filamentous growth
    • DOI 10.1016/j.femsle.2004.04.048, PII S0378109704003209
    • An HS, Lee KH, Kim J. 2004. Identification of an exoribonuclease homolog, CaKEM1/CaXRN1, in Candida albicans and its characterization in filamentous growth. FEMS Microbiol Lett 235: 297-303. (Pubitemid 38746775)
    • (2004) FEMS Microbiology Letters , vol.235 , Issue.2 , pp. 297-303
    • An, H.-S.1    Lee, K.-H.2    Kim, J.3
  • 5
    • 0031300546 scopus 로고    scopus 로고
    • Mpp10p, a new protein component of the U3 snoRNP required for processing of 18S rRNA precursors
    • Baserga SJ, Agentis TM, Wormsley S, Dunbar DA, Lee S. 1997. Mpp10p, a new protein component of the U3 snoRNP required for processing of 18S rRNA precursors. Nucleic Acids Symp Ser 36: 64-67.
    • (1997) Nucleic Acids Symp Ser , vol.36 , pp. 64-67
    • Baserga, S.J.1    Agentis, T.M.2    Wormsley, S.3    Dunbar, D.A.4    Lee, S.5
  • 6
    • 0029093602 scopus 로고
    • Base pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis
    • Beltrame M, Tollervey D. 1995. Base pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis. EMBO J 14: 4350-4356.
    • (1995) EMBO J , vol.14 , pp. 4350-4356
    • Beltrame, M.1    Tollervey, D.2
  • 7
    • 0034595214 scopus 로고    scopus 로고
    • Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis
    • Billy E, Wegierski T, Nasr F, Filipowicz W. 2000. Rcl1p, the yeast protein similar to the RNA 3′-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis. EMBO J 19: 2115-2126. (Pubitemid 30237586)
    • (2000) EMBO Journal , vol.19 , Issue.9 , pp. 2115-2126
    • Billy, E.1    Wegierski, T.2    Nasr, F.3    Filipowicz, W.4
  • 9
    • 0036276111 scopus 로고    scopus 로고
    • Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast
    • DOI 10.1017/S1355838202023063
    • Cote CA, Greer CL, Peculis BA. 2002. Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA 8: 786-797. (Pubitemid 34620455)
    • (2002) RNA , vol.8 , Issue.6 , pp. 786-797
    • Cote, C.A.1    Greer, C.L.2    Peculis, B.A.3
  • 10
    • 0037314114 scopus 로고    scopus 로고
    • Rna Viz 2: An improved representation of RNA secondary structure
    • DOI 10.1093/bioinformatics/19.2.299
    • De Rijk P, Wuyts J, De Wachter R. 2003. RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 19: 299-300. (Pubitemid 36181922)
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 299-300
    • De Rijk, P.1    Wuyts, J.2    De Wachter, R.3
  • 12
    • 0030765368 scopus 로고    scopus 로고
    • Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18s rRNA processing in yeast
    • Dunbar DA, Wormsley S, Agentis TM, Baserga SJ. 1997. Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast. Mol Cell Biol 17: 5803-5812. (Pubitemid 27411087)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.10 , pp. 5803-5812
    • Dunbar, D.A.1    Wormsley, S.2    Agentis, T.M.3    Baserga, S.J.4
  • 14
    • 0018462692 scopus 로고
    • On spacers
    • Fedoroff NV. 1979. On spacers. Cell 16: 697-710.
    • (1979) Cell , vol.16 , pp. 697-710
    • Fedoroff, N.V.1
  • 15
    • 0242285765 scopus 로고    scopus 로고
    • Ribosome assembly in eukaryotes
    • DOI 10.1016/S0378-1119(03)00629-2
    • Fromont-Racine M, Senger B, Saveanu C, Fasiolo F. 2003. Ribosome assembly in eukaryotes. Gene 313: 17-42. (Pubitemid 37338237)
    • (2003) Gene , vol.313 , Issue.1-2 , pp. 17-42
    • Fromont-Racine, M.1    Senger, B.2    Saveanu, C.3    Fasiolo, F.4
  • 17
    • 0021742042 scopus 로고
    • Isolation of the Candida albicans gene for orotidine-5'-phosphate decarboxylase by complementation of S.cerevisiae ura3 and E. coli pyrF mutations
    • DOI 10.1007/BF00328721
    • Gillum AM, Tsay EY, Kirsch DR. 1984. Isolation of the Candida albicans gene for orotidine-5′-phosphate decarboxylase by complementation of S. cerevisiae ura3 and E. coli pyrF mutations. Mol Gen Genet 198: 179-182. (Pubitemid 15180998)
    • (1984) Molecular and General Genetics , vol.198 , Issue.1 , pp. 179-182
    • Gillum, A.M.1    Tsay, E.Y.H.2    Kirsch, D.R.3
  • 18
    • 2142754126 scopus 로고    scopus 로고
    • Ribosome biogenesis: Of knobs and RNA processing
    • DOI 10.1016/j.yexcr.2004.03.016, PII S0014482704001284
    • Granneman S, Baserga SJ. 2004. Ribosome biogenesis: of knobs and RNA processing. Exp Cell Res 296: 43-50. (Pubitemid 38543211)
    • (2004) Experimental Cell Research , vol.296 , Issue.1 , pp. 43-50
    • Granneman, S.1    Baserga, S.J.2
  • 19
    • 19344370199 scopus 로고    scopus 로고
    • Crosstalk in gene expression: Coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing
    • DOI 10.1016/j.ceb.2005.04.001, PII S0955067405000438, Nucleus and Gene Expression
    • Granneman S, Baserga SJ. 2005. Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing. Curr Opin Cell Biol 17: 281-286. (Pubitemid 40719918)
    • (2005) Current Opinion in Cell Biology , vol.17 , Issue.3 , pp. 281-286
    • Granneman, S.1    Baserga, S.J.2
  • 20
    • 27944478055 scopus 로고    scopus 로고
    • The putative NTPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14
    • DOI 10.1128/MCB.25.23.10352-10364.2005
    • Granneman S, Nandineni MR, Baserga SJ. 2005. The putative NTPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14. Mol Cell Biol 25: 10352-10364. (Pubitemid 41681960)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.23 , pp. 10352-10364
    • Granneman, S.1    Nandineni, M.R.2    Baserga, S.J.3
  • 22
    • 0028342849 scopus 로고
    • The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site
    • Henry Y, Wood H, Morrissey JP, Petfalski E, Kearsey S, Tollervey D. 1994. The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J 13: 2452-2463.
    • (1994) EMBO J , vol.13 , pp. 2452-2463
    • Henry, Y.1    Wood, H.2    Morrissey, J.P.3    Petfalski, E.4    Kearsey, S.5    Tollervey, D.6
  • 23
    • 60149090021 scopus 로고    scopus 로고
    • The many pathways of RNA degradation
    • Houseley J, Tollervey D. 2009. The many pathways of RNA degradation. Cell 136: 763-776.
    • (2009) Cell , vol.136 , pp. 763-776
    • Houseley, J.1    Tollervey, D.2
  • 25
    • 0025932166 scopus 로고
    • Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA
    • Hughes JM, Ares M Jr. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast preribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J 10: 4231-4239. (Pubitemid 21905455)
    • (1991) EMBO Journal , vol.10 , Issue.13 , pp. 4231-4239
    • Hughes, J.M.X.1    Ares Jr., M.2
  • 27
    • 0026087180 scopus 로고
    • Preparation of high molecular weight RNA
    • Kohrer K, Domdey H. 1991. Preparation of high molecular weight RNA. Methods Enzymol 194: 398-405.
    • (1991) Methods Enzymol , vol.194 , pp. 398-405
    • Kohrer, K.1    Domdey, H.2
  • 28
    • 77949563362 scopus 로고    scopus 로고
    • Yeast pre-rRNA processing and modification occur cotranscriptionally
    • Kos M, Tollervey D. 2009. Yeast pre-rRNA processing and modification occur cotranscriptionally. Mol Cell 37: 809-820.
    • (2009) Mol Cell , vol.37 , pp. 809-820
    • Kos, M.1    Tollervey, D.2
  • 29
    • 78650413785 scopus 로고    scopus 로고
    • An RNA conformational switch regulates pre-18S rRNA cleavage
    • Lamanna AC, Karbstein K. 2011. An RNA conformational switch regulates pre-18S rRNA cleavage. J Mol Biol 405: 3-17.
    • (2011) J Mol Biol , vol.405 , pp. 3-17
    • Lamanna, A.C.1    Karbstein, K.2
  • 30
    • 0031444668 scopus 로고    scopus 로고
    • Functional separation of pre-rRNA processing steps revealed by truncation of the U3 small nucleolar ribonucleoprotein component, Mpp10
    • DOI 10.1073/pnas.94.25.13536
    • Lee SJ, Baserga SJ. 1997. Functional separation of pre-rRNA processing steps revealed by truncation of the U3 small nucleolar ribonucleoprotein component, Mpp10. Proc Natl Acad Sci 94: 13536-13541. (Pubitemid 28009618)
    • (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , Issue.25 , pp. 13536-13541
    • Lee, S.J.1    Baserga, S.J.2
  • 31
    • 0031930895 scopus 로고    scopus 로고
    • Sequence analysis of the internal transcribed spacer 2 (ITS2) from yeast species within the genus Candida
    • DOI 10.1007/s002849900280
    • Lott TJ, Burns BM, Zancope-Oliveira R, Elie CM, Reiss E. 1998. Sequence analysis of the internal transcribed spacer 2 (ITS2) from yeast species within the genus Candida. Curr Microbiol 36: 63-69. (Pubitemid 28076638)
    • (1998) Current Microbiology , vol.36 , Issue.2 , pp. 63-69
    • Lott, T.J.1    Burns, B.M.2    Zancope-Oliveira, R.3    Elie, C.M.4    Reiss, E.5
  • 32
    • 36248989069 scopus 로고    scopus 로고
    • Evolution of small nuclear RNAs in S. cerevisiae, C. albicans, and other hemiascomycetous yeasts
    • DOI 10.1261/rna.766607
    • Mitrovich QM, Guthrie C. 2007. Evolution of small nuclear RNAs in S. cerevisiae, C. albicans, and other hemiascomycetous yeasts. RNA 13: 2066-2080. (Pubitemid 350127549)
    • (2007) RNA , vol.13 , Issue.12 , pp. 2066-2080
    • Mitrovich, Q.M.1    Guthrie, C.2
  • 33
    • 0027447757 scopus 로고
    • Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis
    • Morrissey JP, Tollervey D. 1993. Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol Cell Biol 13: 2469-2477. (Pubitemid 23097725)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.4 , pp. 2469-2477
    • Morrissey, J.P.1    Tollervey, D.2
  • 34
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman SB, Wunsch CD. 1970. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48: 443-453.
    • (1970) J Mol Biol , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 35
    • 10944222974 scopus 로고    scopus 로고
    • Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae
    • DOI 10.1016/j.molcel.2004.11.031, PII S1097276504007233
    • Osheim YN, French SL, Keck KM, Champion EA, Spasov K, Dragon F, Baserga SJ, Beyer AL. 2004. Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae. Mol Cell 16: 943-954. (Pubitemid 40018404)
    • (2004) Molecular Cell , vol.16 , Issue.6 , pp. 943-954
    • Osheim, Y.N.1    French, S.L.2    Keck, K.M.3    Champion, E.A.4    Spasov, K.5    Dragon, F.6    Baserga, S.J.7    Beyer, A.L.8
  • 36
    • 34249662827 scopus 로고    scopus 로고
    • Hemoglobin is an effective inducer of hyphal differentiation in Candida albicans
    • DOI 10.1080/13693780601028691, PII 770200471
    • Pendrak ML, Roberts DD. 2007. Hemoglobin is an effective inducer of hyphal differentiation in Candida albicans. Med Mycol 45: 61-71. (Pubitemid 46992920)
    • (2007) Medical Mycology , vol.45 , Issue.1 , pp. 61-71
    • Pendrak, M.L.1    Roberts, D.D.2
  • 37
    • 2542442708 scopus 로고    scopus 로고
    • Sensing the host environment: Recognition of hemoglobin by the pathogenic yeast Candida albicans
    • DOI 10.1016/j.abb.2004.02.006, PII S0003986104000827
    • Pendrak ML, Yan SS, Roberts DD. 2004. Sensing the host environment: recognition of hemoglobin by the pathogenic yeast Candida albicans. Arch Biochem Biophys 426: 148-156. (Pubitemid 38680612)
    • (2004) Archives of Biochemistry and Biophysics , vol.426 , Issue.2 , pp. 148-156
    • Pendrak, M.L.1    Yan, S.S.2    Roberts, D.D.3
  • 38
    • 23344445110 scopus 로고    scopus 로고
    • Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes
    • DOI 10.1093/nar/gki756
    • Piccinelli P, Rosenblad MA, Samuelsson T. 2005. Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes. Nucleic Acids Res 33: 4485-4495. (Pubitemid 41222563)
    • (2005) Nucleic Acids Research , vol.33 , Issue.14 , pp. 4485-4495
    • Piccinelli, P.1    Rosenblad, M.A.2    Samuelsson, T.3
  • 39
    • 0027373419 scopus 로고
    • Variations in the number of ribosomal DNA units in morphological mutants and normal strains of Candida albicans and in normal strains of Saccharomyces cerevisiae
    • Rustchenko EP, Curran TM, Sherman F. 1993. Variations in the number of ribosomal DNA units in morphological mutants and normal strains of Candida albicans and in normal strains of Saccharomyces cerevisiae. J Bacteriol 175: 7189-7199. (Pubitemid 23339295)
    • (1993) Journal of Bacteriology , vol.175 , Issue.22 , pp. 7189-7199
    • Rustchenko, E.P.1    Curran, T.M.2    Sherman, F.3
  • 41
    • 0027367147 scopus 로고
    • Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae
    • Schmitt ME, Clayton DA. 1993. Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 13: 7935-7941. (Pubitemid 23354318)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.12 , pp. 7935-7941
    • Schmitt, M.E.1    Clayton, D.A.2
  • 42
    • 0025978949 scopus 로고
    • Getting started with yeast
    • Sherman F. 1991. Getting started with yeast. Methods Enzymol 194: 3-21.
    • (1991) Methods Enzymol , vol.194 , pp. 3-21
    • Sherman, F.1
  • 43
    • 80052965456 scopus 로고    scopus 로고
    • Growth of Candida albicans hyphae
    • Sudbery PE. 2011. Growth of Candida albicans hyphae. Nat Rev Microbiol 9: 737-748.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 737-748
    • Sudbery, P.E.1
  • 44
    • 15444379718 scopus 로고    scopus 로고
    • Processing bodies require RNA for assembly and contain nontranslating mRNAs
    • DOI 10.1261/rna.7258505
    • Teixeira D, Sheth U, Valencia-Sanchez MA, Brengues M, Parker R. 2005. Processing bodies require RNA for assembly and contain nontranslating mRNAs. RNA 11: 371-382. (Pubitemid 40397171)
    • (2005) RNA , vol.11 , Issue.4 , pp. 371-382
    • Teixeira, D.1    Sheth, U.2    Valencia-Sanchez, M.A.3    Brengues, M.4    Parker, R.5
  • 46
    • 0029618257 scopus 로고
    • Processing of pre-ribosomal RNA in Saccharomyces cerevisiae
    • DOI 10.1002/yea.320111607
    • Venema J, Tollervey D. 1995. Processing of pre-ribosomal RNA in Saccharomyces cerevisiae. Yeast 11: 1629-1650. (Pubitemid 26024626)
    • (1995) Yeast , vol.11 , Issue.16 , pp. 1629-1650
    • Venema, J.1    Tollervey, D.2
  • 47
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesis in Saccharomyces cerevisiae
    • DOI 10.1146/annurev.genet.33.1.261
    • Venema J, Tollervey D. 1999. Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33: 261-311. (Pubitemid 30083125)
    • (1999) Annual Review of Genetics , vol.33 , pp. 261-311
    • Venema, J.1    Tollervey, D.2
  • 48
    • 0029118645 scopus 로고
    • Two distinct recognition signals define the site of endonucleolytic cleavage at the 5′-end of yeast 18S rRNA
    • Venema J, Henry Y, Tollervey D. 1995. Two distinct recognition signals define the site of endonucleolytic cleavage at the 5′-end of yeast 18S rRNA. EMBO J 14: 4883-4892.
    • (1995) EMBO J , vol.14 , pp. 4883-4892
    • Venema, J.1    Henry, Y.2    Tollervey, D.3
  • 49
    • 0036183980 scopus 로고    scopus 로고
    • 70-like motif: A eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis
    • 70-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis. Mol Cell 9: 329-339.
    • (2002) Mol Cell , vol.9 , pp. 329-339
    • Wehner, K.A.1    Baserga, S.J.2
  • 50
    • 0025895723 scopus 로고
    • Physical and genetic mapping of Candida albicans: Several genes previously assigned to chromosome 1 map to chromosome R, the rDNA-containing linkage group
    • Wickes B, Staudinger J, Magee BB, Kwon-Chung KJ, Magee PT, Scherer S. 1991. Physical and genetic mapping of Candida albicans: several genes previously assigned to chromosome 1 map to chromosome R, the rDNA-containing linkage group. Infect Immun 59: 2480-2484.
    • (1991) Infect Immun , vol.59 , pp. 2480-2484
    • Wickes, B.1    Staudinger, J.2    Magee, B.B.3    Kwon-Chung, K.J.4    Magee, P.T.5    Scherer, S.6
  • 51
    • 0025266635 scopus 로고
    • Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA from Saccharomyces cerevisiae
    • Yeh LC, Lee JC. 1990. Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA from Saccharomyces cerevisiae. J Mol Biol 211: 699-712. (Pubitemid 20113658)
    • (1990) Journal of Molecular Biology , vol.211 , Issue.4 , pp. 699-712
    • Yeh, L.-C.C.1    Lee, J.C.2
  • 52
    • 0027043311 scopus 로고
    • Structure analysis of the 5' external transcribed spacer of the precursor ribosomal RNA from Saccharomyces cerevisiae
    • DOI 10.1016/0022-2836(92)90867-J
    • Yeh LC, Lee JC. 1992. Structure analysis of the 5′ external transcribed spacer of the precursor ribosomal RNA from Saccharomyces cerevisiae. J Mol Biol 228: 827-839. (Pubitemid 23017273)
    • (1992) Journal of Molecular Biology , vol.228 , Issue.3 , pp. 827-839
    • Yeh, L.-C.C.1    Lee, J.C.2
  • 53
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415. (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.