Polymorphism analysis within the HLA-A locus by universal oligonucleotide array

Human Mutation

Volumn 24, Issue 5, 2004, Pages 428-434

  Consolandi, Clarissa ^a   Frosini, Andrea ^a   Pera, Cinzia ^b   Ferrara, Gian Battista ^c   Bordoni, Roberta ^d   Castiglioni, Bianca ^e   Rizzi, Ermanno ^a   Mezzelani, Alessandra ^d   Bernardi, Luigi Rossi ^a   De Bellis, Gianluca ^d   Battaglia, Cristina ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b UNIVERSITY OF GENOA   (Italy)

^c UNIVERSITY OF GENOA   (Italy)

^d CNR   (Italy)

^e IBBA   (Italy)

Author keywords

Genotyping; HLA A; Mutation detection; PCR LDR; SNP; Universal array

Indexed keywords

HLA A ANTIGEN;

ALLELE; ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROBE; EXON; GENE AMPLIFICATION; GENE LOCUS; GENOTYPE; HUMAN; IMMUNOTHERAPY; INTERMETHOD COMPARISON; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; TUMOR;

ALLELES; CLUSTER ANALYSIS; DNA MUTATIONAL ANALYSIS; EXONS; GENOTYPE; HLA-A ANTIGENS; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SENSITIVITY AND SPECIFICITY;

EID: 8144228120     PISSN: 10597794     EISSN: None     Source Type: Journal    
DOI: 10.1002/humu.20098     Document Type: Article

References (11)

1. Busti E, Bordoni R, Castiglioni B, Monciardini P, Sosio M, Donadio S, Consolandi C, Rossi Bernardi L, Battaglia C, De Bellis G. 2002. Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction). BMC Microbiol 2:27-39.
2. Chen J, Iannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP. 2000. A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res 10:549-557.
3. Consolandi C, Busti E, Pera C, Delfino L, Ferrara GB, Bordoni R, Castiglioni B, Rossi Bernardi L, Battaglia C, De Bellis G. 2003. Detection of HLA polymorphisms by ligase detection reaction and a universal array format: a pilot study for low resolution genotyping. Hum Immunol 64:168-178.
4. Favis R, Day PJ, Gerry NP, Phelan C, Narod S, Barany F. 2000. Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nat Biotechnol 18:561.
5. Gerry NP, Witowski NE, Day J, Hammer RP, Barany G, Barany F. 1999. Universal DNA microarray method for multiplex detection of low abundance point mutations. J Mol Biol 292:251-262.
6. Guo Z, Hood L, Petersdorf EW. 1999. Oligonucleotide arrays for high resolution HLA typing. Rev Immunogenet 1:220-230.
7. Liljedahl U, Karlsson J, Melhus H, Kurland L, Lindersson M, Kahan T, Nystrom F, Lind L, Syvanen AC. 2003. A microarray minisequencing system for pharmacogenetic profiling of antihypertensive drug response. Pharmacogenetics 13:7-17.
8. Mendez R, Serrano A, Jager E, Maleno I, Ruiz-Cabello F, Knuth A, Garrido F. 2001. Analysis of HLA class I expression in different metastases from two melanoma patients undergoing peptide immunotherapy. Tissue Antigens 57:508-519.
9. Pera C, Delfino L, Morabito A, Longo A, Johnston-Dow L, White CB, Colonna M, Ferrara GB. 1997. HLA-A typing - comparison between serology, the amplification refractory mutation system with polymerase chain reaction and sequencing. Tissue Antigens 50:372.
10. Ramakrishnan R, Dorris D, Lublinsky A, Nguyen A, Domanus M, Prokhorova A, Gieser L, Touma E, Lockner R, Tata M, Zhu X, Patterson M, Shippy R, Sendera TJ, Mazumder A. 2002. An assessment of Motorola CodeLink™ microarray performance for gene expression profiling applications. Nucleic Acids Res 30:e30.
11. Schaffer M, Olerup O. 2001. HLA-AB typing by polymerase-chain reaction with sequence-specific primers: more accurate, less errors, and increased resolution compared to serological typing. Tissue Antigens 58:299-307.