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Volumn 101, Issue 10, 2011, Pages

Structural diversity and changes in conformational equilibria of biantennary complex-type N-glycans in water revealed by replica-exchange molecular dynamics simulation

Author keywords

[No Author keywords available]

Indexed keywords

POLYSACCHARIDE; WATER;

EID: 81255184311     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2011.10.019     Document Type: Article
Times cited : (37)

References (17)
  • 1
    • 75749134145 scopus 로고    scopus 로고
    • N-glycan structures: Recognition and processing in the ER
    • M. Aebi, and R. Bernasconi M. Molinari N-glycan structures: recognition and processing in the ER Trends Biochem. Sci. 35 2010 74 82
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 74-82
    • Aebi, M.1    Bernasconi, R.2    Molinari, M.3
  • 2
    • 0000098812 scopus 로고    scopus 로고
    • The glycosidic linkage flexibility and time-scale similarity hypotheses
    • B.J. Hardy The glycosidic linkage flexibility and time-scale similarity hypotheses J. Mol. Struct. (THEOCHEM) 1997 395 396 187-200
    • (1997) J. Mol. Struct. (THEOCHEM) , vol.395-396 , pp. 187-200
    • Hardy, B.J.1
  • 4
    • 68249103612 scopus 로고    scopus 로고
    • Core fucose and bisecting GlcNAc, the direct modifiers of the N-glycan core: Their functions and target proteins
    • M. Takahashi, and Y. Kuroki N. Taniguchi Core fucose and bisecting GlcNAc, the direct modifiers of the N-glycan core: their functions and target proteins Carbohydr. Res. 344 2009 1387 1390
    • (2009) Carbohydr. Res. , vol.344 , pp. 1387-1390
    • Takahashi, M.1    Kuroki, Y.2    Taniguchi, N.3
  • 5
    • 0021112907 scopus 로고
    • Structural determinants of Phaseolus vulgaris erythroagglutinating lectin for oligosaccharides
    • K. Yamashita, A. Hitoi, and A. Kobata Structural determinants of Phaseolus vulgaris erythroagglutinating lectin for oligosaccharides J. Biol. Chem. 258 1983 14753 14755
    • (1983) J. Biol. Chem. , vol.258 , pp. 14753-14755
    • Yamashita, K.1    Hitoi, A.2    Kobata, A.3
  • 6
    • 68149131940 scopus 로고    scopus 로고
    • From structural to functional glycomics: Core substitutions as molecular switches for shape and lectin affinity of N-glycans
    • S. André, and T. Kožár H.J. Gabius From structural to functional glycomics: core substitutions as molecular switches for shape and lectin affinity of N-glycans Biol. Chem. 390 2009 557 565
    • (2009) Biol. Chem. , vol.390 , pp. 557-565
    • André, S.1    Kožár, T.2    Gabius, H.J.3
  • 7
    • 0023646675 scopus 로고
    • Tertiary structure in N-linked oligosaccharides
    • S.W. Homans, R.A. Dwek, and T.W. Rademacher Tertiary structure in N-linked oligosaccharides Biochemistry 26 1987 6553 6560
    • (1987) Biochemistry , vol.26 , pp. 6553-6560
    • Homans, S.W.1    Dwek, R.A.2    Rademacher, T.W.3
  • 8
    • 75849147800 scopus 로고    scopus 로고
    • Conformational analysis of trimannoside and bisected trimannoside using aqueous molecular dynamics simulations
    • H. Kim, and Y. Choi S. Jung Conformational analysis of trimannoside and bisected trimannoside using aqueous molecular dynamics simulations Bull. Korean Chem. Soc. 30 2009 2723 2728
    • (2009) Bull. Korean Chem. Soc. , vol.30 , pp. 2723-2728
    • Kim, H.1    Choi, Y.2    Jung, S.3
  • 9
    • 39049147617 scopus 로고    scopus 로고
    • GLYCAM06: A generalizable biomolecular force field. Carbohydrates
    • K.N. Kirschner, and A.B. Yongye R.J. Woods GLYCAM06: a generalizable biomolecular force field. Carbohydrates J. Comput. Chem. 29 2008 622 655
    • (2008) J. Comput. Chem. , vol.29 , pp. 622-655
    • Kirschner, K.N.1    Yongye, A.B.2    Woods, R.J.3
  • 10
    • 0001616080 scopus 로고    scopus 로고
    • Replica-exchange molecular dynamics method for protein folding
    • Y. Sugita, and Y. Okamoto Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314 1999 141 151
    • (1999) Chem. Phys. Lett. , vol.314 , pp. 141-151
    • Sugita, Y.1    Okamoto, Y.2
  • 11
    • 0036462598 scopus 로고    scopus 로고
    • Conformational studies of oligosaccharides and glycopeptides: Complementarity of NMR, x-ray crystallography, and molecular modeling
    • M.R. Wormald, and A.J. Petrescu R.A. Dwek Conformational studies of oligosaccharides and glycopeptides: complementarity of NMR, x-ray crystallography, and molecular modeling Chem. Rev. 102 2002 371 386
    • (2002) Chem. Rev. , vol.102 , pp. 371-386
    • Wormald, M.R.1    Petrescu, A.J.2    Dwek, R.A.3
  • 12
    • 77954471013 scopus 로고    scopus 로고
    • Fucosylation of chitooligosaccharides by human α1,6- fucosyltransferase requires a nonreducing terminal chitotriose unit as a minimal structure
    • H. Ihara, and S. Hanashima Y. Ikeda Fucosylation of chitooligosaccharides by human α1,6-fucosyltransferase requires a nonreducing terminal chitotriose unit as a minimal structure Glycobiology 20 2010 1021 1033
    • (2010) Glycobiology , vol.20 , pp. 1021-1033
    • Ihara, H.1    Hanashima, S.2    Ikeda, Y.3
  • 14
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulating liquid water
    • W.L. Jorgensen, and J. Chandrasekhar M.L. Klein Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79 1983 926 935
    • (1983) J. Chem. Phys. , vol.79 , pp. 926-935
    • Jorgensen, W.L.1    Chandrasekhar, J.2    Klein, M.L.3
  • 15
    • 84866494325 scopus 로고    scopus 로고
    • Woods Group Complex Carbohydrate Research Center, University of Georgia, Athens, GA
    • Woods Group. 2005-2011. GLYCAM Web. Complex Carbohydrate Research Center, University of Georgia, Athens, GA.
    • (2005) GLYCAM Web
  • 17
    • 1942423619 scopus 로고    scopus 로고
    • MMTSB Tool Set: Enhanced sampling and multiscale modeling methods for applications in structural biology
    • M. Feig, J. Karanicolas, and C.L. Brooks III MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology J. Mol. Graph. Model. 22 2004 377 395
    • (2004) J. Mol. Graph. Model. , vol.22 , pp. 377-395
    • Feig, M.1    Karanicolas, J.2    Brooks Iii, C.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.