Comparison of Bifidobacterium breve strain Yakult transcriptomes in germ-free mice with those in fecal cultures

Journal of Bioscience and Bioengineering

Volumn 112, Issue 5, 2011, Pages 451-457

  Ishikawa, Eiji ^a   Shima, Tatsuichiro ^a   Suda, Kazunori ^a   Shirasawa, Yukio ^a   Sato, Takashi ^a   Umesaki, Yoshinori ^a  

^a YAKULT CENTRAL INSTITUTE FOR MICROBIOLOGICAL RESEARCH   (Japan)

Author keywords

Fecal culture; Glycosidases; Monoassociated mice; Mucosal crosstalk; Sugar transport

Indexed keywords

BIFIDOBACTERIA; BIFIDOBACTERIUM; ENERGY HOMEOSTASIS; EXPRESSION PROFILE; FECAL CULTURES; FERMENTABLE SUGARS; GERM-FREE MICE; GLYCOSIDASES; HUMAN HEALTH; K-MEANS CLUSTERING; MONOASSOCIATED MICE; OLIGONUCLEOTIDE MICROARRAY; REAL-TIME PCR; SUGAR TRANSPORT; TRANSCRIPTIONAL RESPONSE; TRANSCRIPTOMES; UP-REGULATION;

MAMMALS; OLIGONUCLEOTIDES; SUGARS;

GENE EXPRESSION;

ABC TRANSPORTER; BACTERIAL PROTEIN; BACTERIAL RNA; OLIGONUCLEOTIDE; PROTEIN BBRY; SUGAR; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BIFIDOBACTERIUM ADOLESCENTIS; BIFIDOBACTERIUM BREVE; BIFIDOBACTERIUM LONGUM; CECUM; COLON; CONTROLLED STUDY; FECES CULTURE; FEMALE; FERMENTATION; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HOMEOSTASIS; INTESTINE EPITHELIUM CELL; INTESTINE FLORA; MICROARRAY ANALYSIS; MOUSE; NONHUMAN; PROTEIN TRANSPORT; REAL TIME POLYMERASE CHAIN REACTION; UPREGULATION;

ANIMALS; BIFIDOBACTERIUM; CECUM; COLON; FECES; FEMALE; GENE EXPRESSION PROFILING; GERM-FREE LIFE; HUMANS; INTESTINAL MUCOSA; MICE; MICE, INBRED BALB C; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROBIOTICS; REAL-TIME POLYMERASE CHAIN REACTION; SYMBIOSIS; UP-REGULATION;

BIFIDOBACTERIUM BREVE; MUS;

EID: 81255127373     PISSN: 13891723     EISSN: 13474421     Source Type: Journal    
DOI: 10.1016/j.jbiosc.2011.07.016     Document Type: Article

References (31)

1. Cummings J.H., Macfarlane G.T. Role of intestinal bacteria in nutrient metabolism. JPEN J Parenter. Enteral. Nutr. 1997, 21:357-365.
2. Louis P., Scott K.P., Duncan S.H., Flint H.J. Understanding the effects of diet on bacterial metabolism in the large intestine. J. Appl. Microbiol. 2007, 102:1197-1208.
3. Bäckhed F., Ley R.E., Sonnenburg J.L., Peterson D.A., Gordon J.I. Host-bacterial mutualism in the human intestine. Science 2005, 307:1915-1920.
4. Mitsuoka T. Intestinal flora and aging. Nutr. Rev. 1992, 50:438-446.
5. Woodmansey E.J. Intestinal bacteria and ageing. J. Appl. Microbiol. 2007, 102:1178-1186.
6. Fuller R. Probiotics in man and animals. J. Appl. Bacteriol. 1989, 66:365-378.
7. Hotta M., Sato Y., Iwata S., Yamashita N., Sunakawa K., Oikawa T., Tanaka R., Watanabe K., Takayama H., Yajima M. Clinical effects of Bifidobacterium preparations on pediatric intractable diarrhea. Keio J. Med. 1987, 36:298-314.
8. Ishikawa H., Akedo I., Umesaki Y., Tanaka R., Imaoka A., Otani T. Randomized controlled trial of the effect of bifidobacteria-fermented milk on ulcerative colitis. J. Am. Coll. Nutr. 2003, 22:56-63.
9. Kato K., Mizuno S., Umesaki Y., Ishii Y., Sugitani M., Imaoka A., Otsuka M., Hasunuma O., Kurihara R., Iwasaki A., Arakawa Y. Randomized placebo-controlled trial assessing the effect of bifidobacteria-fermented milk on active ulcerative colitis. Aliment. Pharmacol. Ther. 2004, 20:1133-1141.
10. Kitajima H., Sumida Y., Tanaka R., Yuki N., Takayama H., Fujimura M. Early administration of Bifidobacterium breve to preterm infants: randomised controlled trial. Arch. Dis. Child. Fetal Neonatal Ed. 1997, 76:F101-107.
11. Tojo M., Oikawa T., Morikawa Y., Yamashita N., Iwata S., Satoh Y., Hanada J., Tanaka R. The effects of Bifidobacterium breve administration on Campylobacter enteritis. Acta Paediatr. Jpn. 1987, 29:160-167.
12. Leahy S.C., Higgins D.G., Fitzgerald G.F., van Sinderen D. Getting better with bifidobacteria. J. Appl. Microbiol. 2005, 98:1303-1315.
13. Bry L., Falk P.G., Midtvedt T., Gordon J.I. A model of host-microbial interactions in an open mammalian ecosystem. Science 1996, 273:1380-13833.
14. Shima T., Fukushima K., Setoyama H., Imaoka A., Matsumoto S., Hara T., Suda K., Umesaki Y. Differential effects of two probiotic strains with different bacteriological properties on intestinal gene expression, with special reference to indigenous bacteria. FEMS Immunol. Med. Microbiol. 2008, 52:69-77.
15. Fraser C.M., Rappuoli R. Application of microbial genomic science to advanced therapeutics. Annu. Rev. Med. 2005, 56:459-474.
16. Schell M.A., Karmirantzou M., Snel B., Vilanova D., Berger B., Pessi G., Zwahlen M.C., Desiere F., Bork P., Delley M., Pridmore R.D., Arigoni F. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. USA 2002, 99:14422-14427. Erratum in: Proc. Natl. Acad. Sci. USA, 102, 9430-9430 (2005).
17. Klijn A., Mercenier A., Arigoni F. Lessons from the genomes of bifidobacteria. FEMS Microbiol. Rev. 2005, 29:491-509.
18. Boesten R.J., Schuren F.H., de Vos W.M. A Bifidobacterium mixed-species microarray for high resolution discrimination between intestinal bifidobacteria. J. Microbiol. Methods 2009, 76:269-277.
19. Gonzalez R., Klaassens E.S., Malinen E., de Vos W.M., Vaughan E.E. Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide. Appl. Environ. Microbiol. 2008, 74:4686-4694.
20. Sato T., Shirasawa Y., Kiwaki M., Sato S. Genome analysis of lactic acid bacteria and bifidobacteria: genome analysis of Lactobacillus casei and Bifidobacterium breve. J. Intestinal Bacteriol. 2004, 18:135-140. (in Japanese).
21. Yasui K., Tabata M., Yamada S., Abe T., Ikemura T., Osawa R., Suzuki T. Intra-species diversity between seven Bifidobacterium adolescentis strains identified by genome-wide tiling array analysis. Biosci. Biotechnol. Biochem. 2009, 73:1422-1424.
22. Vinciotti V., Khanin R., D'Alimonte D., Liu X., Cattini N., Hotchkiss G., Bucca G., de Jesus O., Rasaiyaah J., Smith C.P., Kellam P., Wit E. An experimental evaluation of a loop versus a reference design for two-channel microarrays. Bioinformatics 2005, 21:492-501.
23. Kitaoka M., Tian J., Nishimoto M. Novel putative galactose operon involving lacto-N-biose phosphorylase in Bifidobacterium longum. Appl. Environ. Microbiol. 2005, 71:3158-3162.
24. Fukuda S., Toh H., Hase K., Oshima K., Nakanishi Y., Yoshimura K., Tobe T., Clarke J.M., Topping D.L., Suzuki T., other 6 authors Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 2011, 469:543-547.
25. Xu J., Burrell M.K., Himrod J., Deng S., Carmichael L.K., Chiang H.C., Hooper L.V., Gordon J.I. A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 2003, 299:2074-2076.
26. Gill S.R., Pop M., Deboy R.T., Eckburg P.B., Turnbaugh P.J., Samuel B.S., Gordon J.I., Relman D.A., Fraser-Liggett C.M., Nelson K.E. Metagenomic analysis of the human distal gut microbiome. Science 2006, 312:1355-1359.
27. Sonnenburg J.L., Xu J., Leip D.D., Chen C.H., Westover B.P., Weatherford J., Buhler J.D., Gordon J.I. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 2005, 307:1955-1959.
28. Sonnenburg E.D., Sonnenburg J.L., Manchester J.K., Hansen E.E., Chiang H.C., Gordon J.I. A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism. Proc. Natl. Acad. Sci. USA 2006, 103:8834-8839.
29. Samuel B.S., Gordon J.I. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc. Natl. Acad. Sci. USA 2006, 103:10011-10016.
30. Bjursell M.K., Martens E.C., Gordon J.I. Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period. J. Biol. Chem. 2006, 281:36269-36279.
31. Sonnenburg J.L., Chen C.T., Gordon J.I. Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol. 2006, 4:e413.