Removing exogenous information using pedigree data

Conservation Genetics

Volumn 12, Issue 6, 2011, Pages 1565-1573

  Amador, Carmen ^a   Toro, Miguel Ángel ^b   Fernández, Jesús ^a  

^a INIA   (Spain)

^b Electrotechnical Section   (Spain)

Author keywords

Genetic recovery; Undesired introgression

Indexed keywords

ALLELE; COMPUTER; CONSERVATION GENETICS; FOUNDER EFFECT; GENEALOGY; INBREEDING; INTROGRESSION; PRESERVATION;

EID: 80855138130     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-011-0255-4     Document Type: Article

References (30)

1. Allendorf FW, Luikart G (2007) Conservation and the genetics of populations. Blackwell, Malden.
2. Allendorf FW, Leary RF, Spruell P, Wenburg JK (2001) The problems with hybrids: setting conservation guidelines. Trends Ecol Evol 16: 613-622.
3. Barilani M, Deregnaucourt S, Gallego S, Galli L, Mucci N, Piombo R, Puigcerver M, Rimondi S, Rodriguez-Teijeiro JD, Spano S, Randi E (2005) Detecting hybridization in wild (Coturnix c. coturnix) and domesticated (Coturnix c. japonica) quail populations. Biol Conserv 126: 445-455.
4. Beaumont M, Barratt EM, Gottelli D, Kitchener AC, Daniels MJ, Pritchard JK, Bruford MW (2001) Genetic diversity and introgression in the Scottish wildcat. Mol Ecol 10: 319-336.
5. Bouman I, Bouman J (1994) The history of the Przewalski's horse. In: Boyd L, Houpt KA (eds) Przewalski's horse: the history and biology of an endangered species. State University of New York Press, New York, pp 5-38.
6. Boyer MC, Muhlfeld CC, Allendorf FW (2008) Rainbow trout (Oncorhynchus mykiss) invasion and the spread of hybridization with native westslope cutthroat trout (Oncorhynchus clarkii lewisi). Can J Fish Aquat Sci 65: 658-669.
7. Butler K, Field C, Herbinger CM, Smith BR (2004) Accuracy, efficiency and robustness of four algorithms allowing full sibship reconstruction from DNA marker data. Mol Ecol 13: 1589-1600.
8. Caballero A, Toro MA (2000) Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genet Res 75: 331-343.
9. Dalvit C, De Marchi M, Cassandro M (2007) Genetic traceability of livestock products: a review. Meat Sci 77: 437-449.
10. Dantzig GB (1963) Linear programming and extensions. Princeton University Press, Princeton.
11. Fernandez J, Toro MA (1999) The use of mathematical programming to control inbreeding in selection schemes. J Anim Breed Genet 116: 447-466.
12. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge.
13. Freese CH, Aune KE, Boyd DP, Derr JN, Forrest SC, Gates CC, Goyan PJP, Grassel SM, Halbert ND, Kunkel K, Redford KH (2007) Second chance for the plains bison. Biol Conserv 136: 175-184.
14. Gandini G, Oldenbroek K (2007) Strategies for moving from conservation to utilisation. In: Oldenbroek K (ed) Utilisation and conservation of farm animal genetic resources. Wageningen Academic Publishers, Wageningen, pp 29-54.
15. Groeneveld LF, Lenstra JA, Eding H, Toro MA, Scherf B, Pilling D, Negrini R, Finlay EK, Jianlin H, Groeneveld E, Weigend S, Consortium G (2010) Genetic diversity in farm animals-a review. Anim Genet 41: 6-31.
16. Halbert ND, Derr JN (2007) A comprehensive evaluation of cattle introgression into US federal bison herds. J Hered 98: 1-12.
17. Hall SJG, Bradley DG (1995) Conserving livestock breed biodiversity. Trends Ecol Evol 10: 267-270.
18. Ingvarsson PK (2001) Restoration of genetic variation lost-the genetic rescue hypothesis. Trends Ecol Evol 16: 62-63.
19. Kirkpatrick S, Gelatt CD, Vecchi MP (1983) Optimization by simulated annealing. Science 220: 671-680.
20. Lacy RC (1997) Errata. Evolution 51: 1025.
21. Lacy RC, Alaks G, Walsh A (1996) Hierarchical analysis of inbreeding depression in Peromyscus polionotus. Evolution 50: 2187-2200.
22. MAPA, (de) Ministerio de Agricultura, Pesca y Alimentación. (2003) Estudio y caracterización del sector equino en España, Madrid. http://www. eurocarne. com/informes/pdf/sector-equino. pdf.
23. Miller CR, Adams JR, Waits LP (2003) Pedigree-based assignment tests for reversing coyote (Canis latrans) introgression into the wild red wolf (Canis rufus) population. Mol Ecol 12: 3287-3301.
24. Negro JJ, Torres MJ, Godoy JA (2001) RAPD analysis for detection and eradication of hybrid partridges (Alectoris rufa × A. graeca) in Spain. Biol Conserv 98: 19-24.
25. Padilla JA, Sansinforiano E, Parejo JC, Rabasco A, Martínez-Trancón M (2009) Inference of admixture in the endangered Blanca Cacereña bovine breed by microsatellite analyses. Livest Sci 122: 314-322.
26. Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, Malek TB, Johnson GS, DeFrance HB, Ostrander EA, Kruglyak L (2004) Genetic structure of the purebred domestic dog. Science 304: 1160-1164.
27. Rhymer JM, Simberloff D (1996) Extinction by hybridization and introgression. Annu Rev Ecol Syst 27: 83-109.
28. Sušnik S, Berrebi P, Dovc P, Hansen MM, Snoj A (2004) Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785). Heredity 93: 273-282.
29. Tallmon DA, Luikart G, Waples RS (2004) The alluring simplicity and complex reality of genetic rescue. Trends Ecol Evol 19: 489-496.
30. Volf J (1994) The Studbook. In: Boyd L, Houpt KA (eds) Przewalski's horse: the history and biology of an endangered species. State University of New York Press, New York, pp 61-73.