High genetic diversity on a sample of pre-Columbian bone remains from Guane territories in northwestern Colombia

American Journal of Physical Anthropology

Volumn 146, Issue 4, 2011, Pages 637-649

  Casas Vargas, Andrea ^a   Gõmez, Alberto ^b   Briceño, Ignacio ^b,c   Díaz Matallana, Marcela ^b,c   Bernal, Jaime E ^b   Rodríguez, José Vicente ^a  

^a UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^b PONTIFICIA UNIVERSIDAD JAVERIANA   (Colombia)

^c UNIVERSIDAD DE LA SABANA   (Colombia)

Author keywords

Amerindian; ancient DNA; Colombia; Guane; Muisca

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; ASIAN AMERICAN; BONE; COLOMBIA; GENE ISOLATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; PHENOTYPIC VARIATION; WESTERN HEMISPHERE;

AMERICAS; ANTHROPOLOGY, PHYSICAL; BONE AND BONES; COLOMBIA; DNA, MITOCHONDRIAL; EMIGRATION AND IMMIGRATION; GENETIC VARIATION; HAPLOTYPES; HISTORY, MEDIEVAL; HUMANS; INDIANS, SOUTH AMERICAN; PHYLOGEOGRAPHY; PRINCIPAL COMPONENT ANALYSIS;

EID: 80855129521     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.21626     Document Type: Article

References (74)

1. Achilli A, Perego UA, Bravi CM, Coble MD, Kong QP, Woodward SR, Salas A, Torroni A, Bandelt HJ,. 2008. The phylogeny of the four Pan-American mtDNA haplogroups: implications for evolutionary and disease studies. PLoS ONE 3: e1764 (1-8).
2. Anderson S, Bankier A, Barrell B, Bruijn M, Drouin J,. 1981. Sequence and organization of the human mitochondrial genome. Nature 290: 457-465. (Pubitemid 11159074)
3. Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N,. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23: 147. (Pubitemid 29455385)
4. Bandelt HJ, Herrnstadt C, Yao YG, Kong QP, Kivisild T, Rengo C, Scozzari R, Richards M, Villems R, Macaulay V, Howell N, Torroni A, Zhang YP,. 2003. Identification of Native Americanfounder mtDNAs through the analysis of complete mtDNA sequences: some caveats. Ann Hum Genet 67: 512-524. (Pubitemid 38016712)
5. Batista O, Kolman C, Bermingham E,. 1995. Mitochondrial DNA diversity in the Kuna Amerinds of Panama. Hum Mol Genet 40: 921-929.
6. Bolnick D, Smith D,. 2003. Unexpected patterns of mitochondrial DNA variation among Native Americans from the southeastern United States. Am J Phys Anthropol 122: 336-354. (Pubitemid 37464359)
7. Bonatto S, Salzano F,. 1997. A single and early migration for the peopling of the Americas supported by mitochondrial DNA sequence data. Proc Natl Acad Sci USA 94: 1866-1871. (Pubitemid 27113928)
8. Carnese F, Mendisco F, Keyser C, Dejean C, Dugoujon J, Bravi C, Ludes B, Crubézy E,. 2010. Paleogenetical study of pre-Columbian Samples from Pampa Grande (Salta, Argentina). Am J Phys Anthropol 141: 452-462.
9. Cavalli-Sforza L,. 1998. The DNA revolution in population genetics. Trends Genet 14: 60-65. (Pubitemid 28122731)
10. Cifuentes A,. 1990. Reseña de un sitio arqueolõgico en la mesa de los Santos (Santander). [In Spanish] Revista Colombiana de Antropología 30: 33-40.
11. Comas D, Calafell F, Mateu E, Perez-Lezaun A, Bosch E, Martinez-Arias R, Clarimon J, Facchini F, Fiori G, Luiselli D, Pettener D, Bertranpetit J,. 1998. Trading genes along the Silk Road: mtDNA sequences and the origin of central Asian populations. Am J Hum Genet 63: 1824-1838. (Pubitemid 30415745)
12. Cooper A, Poinar H,. 2000. Ancient DNA: do it right or not at all. Science 289: 1139. (Pubitemid 30650710)
13. Correal G,. 2004. Enfermedades en la poblaciõn Guane fenotipo y craneoplastias. [In Spanish] Boletín Historia y Antigüedades 91: 55-71.
14. Correal G, Florez I,. 1992. Estudio de las momias Guanes de la Mesa de Los Santos, Santander (Colombia). [In Spanish] Rev Acad Col Ciencias Exactas, Fisicas y Naturales 18: 293-289.
15. Derenko MV, Malyarchuk BA, Dambueva IK, Shaikhaev GO, Dorzhu CM, Nimaev DD, Zakharov IA,. 2000. Mitochondrial DNA variation in two South Siberian Aboriginal populations: implications for the genetic history of North Asia. Hum Biol 72: 945-973. (Pubitemid 32152221)
16. Dillehay T,. 2000. The settlement of the Americas: a new prehistory. New York: Basic Books.
17. Dixon E,. 1999. Bones, boats and bison: archeology and the first colonization of western North America. Albuquerque: University of New Mexico Press.
18. Dornelles C, Bonatto S, De Freitas L, Salzano F,. 2005. Is haplogroup X present in extant South American Indians? Am J Phys Anthropol 127: 439-448. (Pubitemid 41022736)
19. Fehren-Schmitz L, Reindel M, Tomasto Cagigao E, Hummel H, Herrmann B,. 2010. Pre-Columbian population dynamics in coastal Southern Peru: a diachronic investigation of mtDNA patterns in the Palpa region by ancient DNA analysis. Am J Phys Anthropol 141: 208-221.
20. Fernández C,. 1999. La arqueología molecular aplicada a la soluciõn de problemas prehistoricos: análisis de ADN mitocondrial en momias y restos õseos prehispánicos (tesis). [In Spanish] Bogotá: Universidad Nacional de Colombia.
21. Forster P, Harding R, Torroni A, Bandelt H,. 1996. Origin and evolution of Native American mtDNA variation a reappraisal. Am J Hum Genet 59: 935-945. (Pubitemid 26328092)
22. Fox C,. 1996. Mitochondrial DNA haplogroups in four tribes from Tierra del Fuego-Patagonia: inferences about the peopling of the Americas. Hum Biol 68: 855-871.
23. Gilbert M, Bandelt H, Hofreiter M, Barnes I,. 2005. Assessing ancient DNA studies. Trends Ecol Evol 20: 541-544. (Pubitemid 41323710)
24. Ginther C, Corach D, Penacino G, Rey J, Carnese F, Hutz M, Anderson A, Just J, Salzano F, King M,. 1993. Genetic variation among the Mapuche Indians from the Patagonian region of Argentina: mitochondrial DNA sequence variation and allele frequencies of several nuclear genes. In:, Pena S, Chakraborty R, Epplen J, Jeffreys A,. DNA fingerprinting: state of the science. Basel: Birkhauser Verlag. p 211-219.
25. Greenberg JH, Turner CG, Zegura SL,. 1986. The settlement of the Americas: a comparison of the linguistic, dental and genetic evidence. Curr Anthropol 27: 477-498.
26. Kemp B, Tung T, Summar M,. 2009. Genetic continuity after the collapse of the Wari Empire: mitochondrial DNA profiles from Wari and post-Wari populations in the ancient Andes. Am J Phys Anthropol 140: 80-91.
27. Keyeux G, Rodas C, Gelvez N, Carter D,. 2002. Possible migration routes into South America deduces from mitochondrial DNA studies in Colombian Amerindian populations. Hum Biol 74: 211-233. (Pubitemid 34497403)
28. Kittles R, Bergen A, Urbanek M, Virkkunen M, Linnoila M, Goldman D, Long JC,. 1999. Autosomal, mitochondrial, and Y chromosome DNA variation in Finland: evidence for a male-specific bottleneck. Am J Phys Anthropol 108: 381-399. (Pubitemid 29165365)
29. Kolman C, Bermingham E, Cooke R, Ward R, Arias T, Guionneau-Sinclair F,. 1995. Reduced mtDNA diversity in the Ngöbe Amerinds from Panama. Genetics 140: 275-283.
30. Kolman C, Sambuughin N, Bermingham E,. 1996. Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World Founders. Genetics 142: 1321-1334. (Pubitemid 26115511)
31. Kolman CJ, Bermingham E,. 1997. Mitochondrial and nuclear DNA diversity in the Choco and Chibcha Amerinds of Panama. Genetics 147: 1289-1302. (Pubitemid 27467469)
32. Lalueza C, Perez-Perez A, Prats E, Cornudella L, Turbon D,. 1997. Lack of founding American mitochondrial DNA lineages in extinct aborigenes from Tierra del Fuego-Patagonia. Hum Mol Genet 6: 41-46. (Pubitemid 27033963)
33. Lalueza-Fox C, Gilbert M, Martínez-Fuentes A, Calafell F, Bertranpetit J,. 2003. Mitochondrial DNA from Pre-Columbian Ciboney from Cuba and the prehistoric colonization of the Caribbean. Am J Phys Anthropol 121: 97-108. (Pubitemid 36622384)
34. Lalueza-Fox C, Luna-Calderon F, Calafell F, Morera B, Bertranpetit J,. 2001. mtDNA from extinct Tainos and the peopling of the Caribbean. Ann Hum Genet 65: 137-151. (Pubitemid 32452116)
35. Langebaek CH,. 1987. Mercados, poblamiento e integraciõn étnica entre los Muiscas, siglo XVI. [In Spanish] Bogotá: Banco de la República.
36. Lewis C, Lizarraga B, Tito R, Lopez P, Iannacones I, Medina A, Martínez RE, De la Cruz F, Cáceres AM, Stone AC,. 2007. Mitochondrial DNA and the peopling of South America. Hum Biol 79: 159-178. (Pubitemid 47623775)
37. Lucena M,. 1974. Apuntes para Etnohistoria Guane Inf No 1: La exogamia. [In Spanish] Rev Colombiana de Antropología 16: 89-193.
38. Melton P, Briceño I, Gomez A, Devor E, Bernal J, Crawford M,. 2007. Biological relationship between Central and South American Chibchan speaking population: evidence from mtDNA. Am J Phys Anthropol 132: 753-770. (Pubitemid 46668481)
39. Monsalve M, Cardenas F, Guhl F, Delaney A, Devine D,. 1996. Phylogenetic analysis of mtDNA lineages in South American mummies. Ann Hum Genet 60: 293-303. (Pubitemid 26283446)
40. Moraga M, Standen V, Carvallo P, Rothhammer,. 2005. Microevolution in prehistoric Andean populations:chronologic mtDNA variation in the desert valleys of northern Chile. Am J Phys Anthropol 127: 170-181. (Pubitemid 40664276)
41. Moraga M, Rocco P, Miquel J, Nervi F, Llop E, Chakraborty R, Rothhammer FJ, Carvallo P,. 2000. Mitochondrial DNA polymorphisms in Chilean aboriginal populations: implications for the peopling of the southern cone of the continent. Am J Phys Anthropol 113: 19-29.
42. Morales J, Cadavid G,. 1984. Investigaciones Etnohistõricas y Arqueolõgicas en el área Guane. [In Spanish] Bogotá: Fundaciõn de Investigaciones Arqueolõgicas Nacionales. Banco de la República.
43. Nei M,. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
44. O'Rourke D, Hayes M, Carlyle S,. 2000. Ancient DNA studies in physical anthropology. Annu Rev Anthropol 29: 217-242.
45. Pakendorf B, Stoneking M,. 2005. Mitochondrial DNA and human evolution. Annu Rev Genomics Hum Genet 6: 165-183. (Pubitemid 41397080)
46. Ricaurt F, Fedoseeva A, Keyser C, Crubezy E, Ludes B,. 2005. Ancient DNA anlysis of human neolithic remains found in northeastern Siberia. Am J Phys Anthropol 126: 458-462. (Pubitemid 40388143)
47. Rodríguez, J,. 1983. Etnogénesis y cultura antiguas de la poblaciõn aborigen de los Andes Septentrionales (Colombia). Ph.D. Dissertation [In Spanish], Instituto de Etnografía y Antropología, Academia de Ciencias de la URSS.
48. Rodriguez JV,. 1999. Los Chibchas: Pobladores antiguos de los andes orientales. Adaptaciones Bioculturales. [In Spanish] Fundaciõn de Investigaciones Arqueolõgicas Nacionales Banco de la República.
49. Rodriguez JV,. 2007. La diversidad poblacional de Colombia en el tiempo y el espacio: estudio Craneométrico. [In Spanish] Rev Acad Colomb Cienc 31: 321-346.
50. Sánchez C,. 2007. Secuenciaciõn de ADN mitocndrial a partir de fragmentos õseos prehispánicos hallados en el sector de Candelaria La Nueva en Bogotá (Tesis). [In Spanish] Bogotá: Pontificia Universidad Javeriana.
51. Santos M, Ward R, Barrantes R,. 1994. MtDNA variation in the Chibcha Amerindian Huetar from Costa Rica. Hum Biol 66: 963-977.
52. Schultz B, Glenn D,. 2008. Using ancient mtDNA to reconstruct the population history of northeastern North America. Am J Phys Anthropol 137: 14-29.
53. Schurr T,. 2004. The peopling of the New World: perspectives from molecular anthropology. Ann Rev Antrhopol 33: 551-583. (Pubitemid 39547431)
54. Schurr T, Ballinger S, Gan Y, Hodge J, Merriwether D, Lawrence D, Knowler W, Weiss K, Wallace D,. 1990. Amerindian mitochondrial DNAs have rare Asian mutations at high frequencies, suggesting they derived from four primary maternal lineages. Am J Hum Gen 46: 613-623.
55. Schurr T, Sukenik R, Starikovskaya E, Wallace D,. 1999. Mitochondrial DNA variation in Koryaks and Itel'men: population replacement in the Okhotsk Sea-Bering Sea region during the Neolithic. Am J Phys Anthropol 108: 1-39. (Pubitemid 29029816)
56. Shields G, Schmiechen A, Frazier B, Redd A, Voevoda M, Reed J, Ward R,. 1993. mtDNA sequences suggest a recent evolutionary divergence for Beringian and northern North American populations. Am J Hum Genet 53: 549-562. (Pubitemid 23304130)
57. Shinoda K, Adachi N, Guillen S, Shimada I,. 2006. Mitochondrial DNA analysis of ancient Peruvian highlanders. Am J Phys Anthropol 131: 98-107. (Pubitemid 44267106)
58. Silva A,. 2007. Análisis de ADN mitocondrial en una muestra de restos õseos arcaicos del periodo Herrera en la sabana de Bogotá (tesis). [In Spanish] Bogotá: Universidad Nacional de Colombia.
59. Silva A, Briceño I, Burgos J, Torres D, Villegas V, Gomez A, Bernal JE, Rodríguez JV,. 2008. Análisis de ADN mitocondrial en una muestra de restos õseos arcaicos del periodo Herreraen la sabana de Bogotá. [In Spanish] Biomédica 28: 569-577.
60. Simõn P,.(1626/1981). Noticias historiales de las conquistas de Tierra Firme en las Indias Occidentales. [In Spanish] Bogotá: Biblioteca Banco Popular.
61. Smith D, Malhi R, Eshleman J, Lorenz J, Kaestle F,. 1999. Distribution of mtDNA haplogroup X among Native North Americans. Am J Phys Anthropol 110: 271-284. (Pubitemid 29504073)
62. Starikovskaya Y, Sukernik R, Schurr T, Kogelnik A, Wallace D,. 1998. mtDNA diversity in Chukchi and Siberian Eskimos: implications for the genetic history of Ancient Beringia and the peopling of the New World. Am J Hum Genet 63: 1473-1491. (Pubitemid 30418546)
63. Stone A, Stoneking M,. 1998. mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. Am J Hum Genet 62: 1153-1170. (Pubitemid 28199018)
64. Tamm E, Kivisild T, Reidla M, Metspalu M, Smith DG, Mulligan CJ, Bravi CM, Rickards O, Martinez-Labarga C, Khusnutdinova EK, Fedorova SA, Golubenko MV, Stepanov VA, Gubina MA, Zhadanov SI, Ossipova LP, Damba L, Voevoda MI, Dipierri JE, Villems R, Malhi RS,. 2007. Beringian standstill and spread of Native American founders. PLoS ONE 2: e829 (1-6).
65. Tamura K, Nei M,. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526. (Pubitemid 23157236)
66. Tarazona-Santos E, Carvalho-Silva D, Pettener D, Luiselli D, De Stefano G,. 2001. Genetic differenciation in South Amerindians is related to enviromental and cultural diversity: evidence from the Y chromosome. Am J Hum Genet 68: 1485-1496. (Pubitemid 32510624)
67. Torroni A, Schurr T, Yang C, Szathmary E, Williams R, Schanfield M, Troup G, Knowler W, Lawrence D, Weiss K, Wallace D,. 1992. Native American mitochondrial DNA analysis indicates that the Amerind and the Nadene population were founded by two independent migrations. Genetics 130: 153-162.
68. Torroni A, Shurr T, Cabell M, Brown M, Neel J, Larsen M, Smith D, Vullo C, Wallace D,. 1993a. Asian affinities and Continental radiation of the four founding Native American mtDNAs. Am J Hum Genet 53: 563-590. (Pubitemid 23304131)
69. Torroni A, Sukernik R, Schurr T, Starikorskaya Y, Cabell M, Crawford M, Comuzzie A, Wallace D,. 1993b. mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans. Am J Hum Genet 53: 591-608. (Pubitemid 23304132)
70. Wallace D, Garrison K, Knowler W,. 1985. Dramatic founder effects in Amerindian mitochondrial DNAs. Am J Phys Anthropol 68: 149-155.
71. Wallace DC, Torroni A,. 1992 American Indian prehistory as written in mitochondrial DNA: a review. Hum Biol 64: 403-416.
72. Ward R, Frazier B, Dew-Jager K, Pääbo S,. 1991. Extensive mitochondrial diversity within a single Amerindian tribe. Proc Natl Acad Sci USA 88: 8720-8724. (Pubitemid 21915428)
73. Ward R, Redd A, Valencia D, Frazier B, Pääbo S,. 1993. Genetic and linguistic differentiation in the Americas. Proc Natl Acad Sci USA 90: 10663-10667. (Pubitemid 23347102)
74. Ward R, Salzano F, Bonatto S, Hultz M, Coimbra C, Santos R,. 1996. Mitochondrial DNA polymorphisms in thre Brazilian Indian tribes. Am J Hum Biol 8: 317-323. (Pubitemid 126477629)