Mitochondrial DNA analysis of ancient Peruvian highlanders

American Journal of Physical Anthropology

Volumn 131, Issue 1, 2006, Pages 98-107

  Shinoda, Ken Ichi ^a   Adachi, Noboru ^b   Guillen, Sonia ^c   Shimada, Izumi ^d  

^a DEPARTMENT OF BOTANY   (Japan)

^b TOHOKU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c The Bioanthropology Foundation Peru   (Peru)

^d SOUTHERN ILLINOIS UNIVERSITY   (United States)

Author keywords

Ancient DNA; Inca; Peru; Urubamba

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; DNA DETERMINATION; DNA SEQUENCE; HAPLOTYPE; HUMAN; PERU; POLYMERASE CHAIN REACTION; RURAL POPULATION; SEASHORE;

DNA, MITOCHONDRIAL; FOSSILS; HAPLOTYPES; HUMANS; PERU; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA;

EID: 33747589920     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.20408     Document Type: Article

References (56)

1. Adachi N, Dodo Y, Ohshima N, Doi N, Yoneda M, Matsumura H. 2003. Morphologic and genetic evidence for the kinship of juvenile skeletal specimens from a 2,000 year-old double burial of the Usu-Moshiri site, Hokkaido, Japan. Anthropol Sci 111:347-363.
2. Adachi N, Umetsu K, Takigawa W, Sakaue K. 2004. Phylogenetic analysis of the human ancient mitochondrial DNA. J Archaeol Sci 31:1339-1348.
3. Alves-Silva J, Santos MDS, Guimaraes PEM, Ferreira ACS, Bandelt HJ, Pena SDJ, Prado VF. 2000. The ancestry of Brazilian mtDNA linages. Am J Hum Genet 67:444-461.
4. Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147.
5. Bailliet G, Rothhammer F, Carnese FR, Bravi CM, Bianchi NO. 1994. Founder mitochondrial haplotypes in Amerindian populations. Am J Hum Genet 55:27-33.
6. Bandelt HJ, Lahermo P, Richards M, Macaulay V. 2001. Detecting errors in mtDNA data by phylogenetic analysis. Int J Legal Med 115:64-69.
7. Batista O, Kolman CJ, Bermingham E. 1995. Mitochondrial DNA diversity in the Kuna Amerinds of Panama. Hum Mol Genet 4:921-929.
8. Bingham H. 1912. Preliminary report of the Yale Peruvian expedition. Bull Am Geogr Soc 44:20-26.
9. Bingham H. 1913. In the wonderland of Peru. Natl Geogr Mag 24:387-573.
10. Bingham H. 1916. Further explorations in the land of the Incas. Natl Geogr Mag 29:431-473.
11. Bingham H. 1930. Machu Picchu, a citadel of the Incas. Report of the explorations and excavations made in 1911, 1912 and 1915 under the auspices of Yale University and the National Geographic Society. New Haven: Yale University Press.
12. Burger RL, Salazar LC. 2003. Preface. In: Burger R, Salazar LC, editors. The 1912 Yale Peruvian scientific expedition collection from Machu Picchu: human and animal remains, Yale University publications in anthropology 85. New Haven: Peabody Museum of Natural History, Yale University. p xiii-xv.
13. Eaton GF. 1916. The collection of osteological material from Machu Picchu. Memoirs of the Connecticut Academy of Arts and Sciences 5. New Haven: Tuttle, Morehouse and Taylor.
14. Farrington IS. 1995. The mummy, estate and palace of Inka Huayna Capac at Quispeguanca. Tawantinsuyu 1:55-65.
15. Ginther C, Corach D, Penacino GA, Rey JA, Carnese FR, Hutz MH, Anderson A, Just J, Salzano FM, King MC. 1993. Genetic variation among the Mapuche Indians from the Patagonian region of Argentina: mitochondrial DNA sequence variation and allele frequencies of several nuclear genes. EXS 67:211-219.
16. Horai S, Kondo R, Nakagawa-Hattori Y, Hayashi S, Sonoda S, Tajima K. 1993. Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol Biol Evol 10:23-47.
17. Kendall A. 1974. Architecture and planning at the Inca sites in the Cusichaca area. Baessler Archiv 22:73-137.
18. Kendall A. 1985. Aspects of Inca architecture: description, function and chronology. BAR international series, 242. Oxford, British Archaeological Reports.
19. Kendall A. 1988. Inca planning north of Cuzco between Anta and Machu Picchu and along the Urubamba Valley. In: Saunders NJ, de Montomollin O, editors. Recent studies in pre-Columbian archaeology. Oxford: British Archaeological Reports. p 457-488.
20. Kivisild T, Tolk HV, Parik J, Wang Y, Papiha SS, Bandelt HJ, Villems R. 2002. The emerging limbs and twigs of the East Asian mtDNA tree. Mol Biol Evol 19:1737-1751.
21. Kolman CJ, Tuross N. 2000. Ancient DNA analysis of human populations. Am J Phys Anthropol 111:5-23.
22. Kolman CJ, Bermingham E, Cooke R, Ward RH, Arias TD, Guionneau-Sinclair F. 1995. Reduced mtDNA diversity in the Ngobe Amerinds of Panama. Genetics 140:275-283.
23. Kong QP, Yao YG, Sun C, Bandelt HJ, Zhu CL, Zhang YP. 2003. Phylogeny of East Asian mitochondrial DNA lineages inferred from complete sequences. Am J Hum Genet 73:671-676.
24. Lewis CM, Tito RY, Lizárraga B, Stone AC. 2005. Land, language, and loci: mtDNA in Native Americans and the genetic history of Peru. Am J Phys Anthropol 127:351-360.
25. MacCurdy V, Richards M, Hickey E, Vega E, Cruciani F, Guida V, Scozzari R, Bonné-Tamir, B, Sykes B, Torroni A. 1999. The emerging tree of West Eurasian mtDNAs: a synthesis of control-region sequence and RFLPs. Am J Hum Genet 64:232-249.
26. MacCurdy G. 1918. Surgery among ancient Peruvians. Art Archaeol 7:381-394.
27. MacCurdy G. 1923. Human skeletal remains in the Peruvian highlands. Am J Phys Anthropol 6:217-330.
28. Maruyama S, Minaguchi K, Saitou N. 2003. Sequence polymorphisms of the mitochondrial DNA control region and phylogenetic analysis of mtDNA lineages in the Japanese populations. Int J Legal Med 117:218-225.
29. Merriwether DA, Rothhammer F, Ferrell RE. 1995. Distribution of the four founding lineage haplotypes in Native Americans suggests a single wave of migration for the New World. Am J Phys Anthropol 98:411-30.
30. Nata M, Adachi N, Hashiyada M, Kanetake J, Ji G, Mimasaka S, Takahashi K, Sagisaka K, Funayama M. 1999. Sequence polymorphism of the D-loop of mitochondrial DNA in Japanese and Chinese population. Acta Crim Japan 65:244-254.
31. Niles SA. 1984. Architectural form and social function in Inca towns near Cuzco. In: Kendall A, editor. Current archaeological projects in the Central Andes-some approaches and results. British Archaeological Reports international series 210. Oxford: British Archaeological Reports. p 205-219.
32. Niles SA. 1988. Looking for "lost" Inca palaces. Expedition 30:56-64.
33. Niles SA. 1999. Shape of Inca history: narrative and architecture in an Andean empire. Iowa City: University of Iowa Press.
34. Protzen JP. 1993. Inca architecture and construction at Ollantaytambo. Oxford: Oxford University Press.
35. Quintana-Murci L, Semino O, Bandelt HJ, Passarino G, McElreavey K, Santachiara-Benerecetti AS. 1999. Genetic evidence for an early exit of Homo sapiens sapiens from Africa through eastern Africa. Nat Genet 23:437-441.
36. Raymond M, Rousset F. 1995. An exact test of population differentiation. Evolution 49:1280-1283.
37. Rickards O, Martinez-Labarga C, Lum JK, De Stefano GF, Cann RL. 1999. mtDNA history of the Cayapa Amerinds of Ecuador: detection of additional founding lineages for the Native American populations. Am J Hum Genet 65:519-530.
38. Rodriguez-Delfin LA, Rubin-de-Celis VE, Zago MA. 1999. Genetic diversity in an Andean population from Peru and regional migration patterns of Amerindians in South America: data from Y chromosome and mitochondrial DNA. Hum Hered 51:97-106.
39. Rowe JH. 1982. Policies and institutions relating to the unification of the empire. In: Collier GA, Rosaldo RI, Wirth JD, editors. The Inca and Aztec states, 1400-1800. New York: Academic Press. p 93-118.
40. Rowe JH. 1990. Machu Picchu a la luz de documentes del siglo XVI. Historica 14:139-154.
41. Santos M, Ward RH, Barrantes R. 1994. mtDNA variation in the Chibcha Amerindian Huetar from Costa Rica. Hum Biol 66:963-77.
42. Schneider S, Roessli D, Excoffier L. 2000. Arlequuin version 2.000: a software for population genetics data analysis. Geneva: Genetic and Biometry Laboratory, University of Geneva.
43. Shimada I. 1995. Cultura Sicán: dios, riqueza y poder en la costa norte del Peru. Lima: Banco Continental.
44. Shimada I. 1999. The evolution of Andean diversity: regional formations, ca. 500 B.C.-A.D. 600. In: Salomon F, Schwartz S, editors. Cambridge history of native peoples of the Americas. Cambridge: Cambridge University Press. p 350-517.
45. Shimada I, Anderson KB, Haas H, Langenheim JH. 1997. Amber from 1000-year old prehispanic tombs in northern Peru. In: Vandiver PB, Druzik JR, Merkel JF, Stewart J, editors. Materials issues in art and archaeology V. Pittsburgh: Materials Research Society. p 3-18.
46. Shimada I, Gordus A, Jo A. 2000. Technology, iconography, and significance of metals: a multi-dimensional analysis of Middle Sican Objects. In: McEwan C, editor. Pre-Columbian gold: technology, iconography, and style. London: British Museum Press. p 28-61.
47. Shimada I, Shinoda K, Farnum J, Corruccini R, Watanabe H. 2004. An integrated analysis of pre-Hispanic mortuary practices: a Middle Sican case study. Curr Anthropol 45:369-402.
48. Thomas M, Gilbert P, Willerslev E, Hansen AJ, Barnes I, Rudbeck L, Lynnerup N, Cooper A. 2003. Distribution patterns of postmortem damage in human mitochondrial DNA. Am J Hum Genet 72:32-47.
49. Torroni A, Schurr TG, Cabell MF, Brown MD, Neel JV, Larsen M, Smith DG, Vullo CM, Wallace DC. 1993. Asian affinities and continental radiation of the four founding Native American mtDNAs. Am J Hum Genet 53:563-590.
50. Torroni A, Chen YS, Semino O, Santachiara-Beneceretti AS, Scott CR, Lott MT, Winter M, Wallace DC. 1994. mtDNA and Y-chromosome polymorphisms in four Native American populations from southern Mexico. Am J Hum Genet 54:303-318.
51. Umetsu K, Tanaka M, Yuasa I, Saitou N, Takeyasu T, Fuku N, Naito E, Ago K, Nakayashiki N, Miyoshi A, Kashimura S, Watanabe G, Osawa M. 2001. Multiplex amplified product-length polymorphism analysis for rapid detection of human mitochondrial DNA variations. Electrophoresis 22:3533-3538.
52. Verano JW. 2003. Human skeletal remains from Machu Picchu: a reexamination of the Yale Peabody Museum's collections. In: Burger R, Salazar L, editors. The 1912 Yale Peruvian scientific expedition collection from Machu Picchu: human and animal remains. Yale University publications in anthropolology 85. New Haven: Peabody Museum of Natural History, Yale University. p 65-117.
53. Von Hagen A, Morris C. 1998. The cities of the ancient Andes. London: Thames and Hudson.
54. Wallace DC, Garrison K, Knowler WC. 1985. Dramatic founder effects in Amerindian mitochondrial DNAs. Am J Phys Anthropol 68:149-155.
55. Yao YG, Kong QP, Bandelt HJ, Kivisild T, Zhang YP. 2002. Phylogenetic differentiation of mitochondrial DNA in Han Chinese. Am J Hum Genet 70:635-651.
56. Yao YG, Kong QP, Man XY, Bandelt HJ, Zhang YP. 2003. Reconstructing the evolutionary history of China: a caveat about inferences drawn from ancient DNA. Mol Biol Evol 20:214-219.