Longitudinal exchange: An alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy

Journal of Biomolecular NMR

Volumn 51, Issue 1-2, 2011, Pages 123-129

  Kloiber, Karin ^a   Spitzer, Romana ^a   Grutsch, Sarina ^a   Kreutz, Christoph ^a   Tollinger, Martin ^a  

^a UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

DNA; Dynamics; Line broadening; Longitudinal exchange; Relaxation

Indexed keywords

DNA; OLIGOMER;

ANALYTIC METHOD; ARTICLE; CONFORMATIONAL TRANSITION; IMAGE ANALYSIS; LONGITUDINAL EXCHANGE EXPERIMENT; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RELIABILITY; SPECTROSCOPY;

DNA; KINETICS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR;

EID: 80755143728     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-011-9547-8     Document Type: Article

References (21)

1. F Delaglio S Grzesiek GW Vuister G Zhu J Pfeifer A Bax 1995 NMRPipe: a multidimensional spectral processing system based on UNIX pipes J Biomol NMR 6 277 293 10.1007/BF00197809
2. NA Farrow O Zhang JD Forman-Kay LE Kay 1995 Comparison of the backbone dynamics of a folded and an unfolded SH3 domain existing in equilibrium in aqueous buffer Biochemistry 34 3 868 878 10.1021/bi00003a021
3. RA Hoffman S Forsen 1966 High resolution nuclear magnetic double and multiple resonance Prog Nucl Magn Reson 1 1966 15 204 10.1016/S0079-6565(66) 80004-3
4. RA Hoffman S Forsen 1966 Transient and steady-state Overhauser experiments in the investigation of relaxation processes. Analogies between chemical exchange and relaxation J Chem Phys 45 6 2049 2060 10.1063/1.1727890
5. PM Hwang LE Kay 2005 Solution structure and dynamics of integral membrane proteins by NMR: a case study involving the enzyme PagP Methods Enzymol 394 335 350 10.1016/S0076-6879(05)94013-5 (Pubitemid 40460922)
6. 13C-methyl label. Nucleic Acids Res 39(10):4340-4351
7. Y Li AG Palmer III 2009 TROSY-selected ZZ-exchange experiment for characterizing slow chemical exchange in large proteins J Biomol NMR 45 4 357 360 10.1007/s10858-009-9385-0
8. J Lingbeck MG Kubinec J Miller BR Reid GP Drobny MA Kennedy 1996 Effect of adenine methylation on the structure and dynamics of TpA steps in DNA: NMR structure determination of [d(CGAGGTTTAAACCTCG)]2 and its A9-methylated derivative at 750 MHz Biochemistry 35 3 719 734 10.1021/bi951364k (Pubitemid 26034556)
9. VZ Miloushev F Bahna C Ciatto G Ahlsen B Honig L Shapiro AG Palmer 3rd 2008 Dynamic properties of a type II cadherin adhesive domain: implications for the mechanism of strand-swapping of classical cadherins Structure 16 8 1195 1205 10.1016/j.str.2008.05.009
10. AK Mittermaier LE Kay 2009 Observing biological dynamics at atomic resolution using NMR Trends Biochem Sci 34 12 601 611 10.1016/j.tibs.2009.07.004
11. GT Montelione G Wagner 1989 2D chemical exchange NMR spectroscopy by proton-detected heteronuclear correlation J Am Chem Soc 111 3096 3098 10.1021/ja00190a072
12. Y Nikolaev K Pervushin 2007 NMR spin state exchange spectroscopy reveals equilibrium of two distinct conformations of leucine zipper GCN4 in solution J Am Chem Soc 129 20 6461 6469 10.1021/ja0685295 (Pubitemid 46799343)
13. AG Palmer 3rd CD Kroenke JP Loria 2001 Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules Methods Enzymol 339 204 238 10.1016/S0076-6879(01)39315-1 (Pubitemid 32666562)
14. B Puffer C Kreutz U Rieder MO Ebert R Konrat R Micura 2009 5-Fluoro pyrimidines: labels to probe DNA and RNA secondary structures by 1D 19F NMR spectroscopy Nucleic Acids Res 37 22 7728 7740 10.1093/nar/gkp862
15. C Rischel 1995 Fundamentals of peak integration J Magn Reson A 116 255 258 10.1006/jmra.1995.0016
16. Robson SA, Peterson R, Bouchard LS, Villareal VA, Clubb RT (2010) A heteronuclear zero quantum coherence Nz-exchange experiment that resolves resonance overlap and its application to measure the rates of heme binding to the IsdC protein. J Am Chem Soc 132(28):9522-9523
17. D Sahu GM Clore J Iwahara 2007 TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules J Am Chem Soc 129 43 13232 13237 10.1021/ja074604f (Pubitemid 350058364)
18. R Sprangers A Gribun PM Hwang WA Houry LE Kay 2005 Quantitative NMR spectroscopy of supramolecular complexes: dynamic side pores in ClpP are important for product release Proc Natl Acad Sci USA 102 46 16678 16683 10.1073/pnas.0507370102 (Pubitemid 41688836)
19. M Tollinger NR Skrynnikov FA Mulder JD Forman-Kay LE Kay 2001 Slow dynamics in folded and unfolded states of an SH3 domain J Am Chem Soc 123 46 11341 11352 10.1021/ja011300z (Pubitemid 33070591)
20. H Wang Y He CD Kroenke S Kodukula J Storch AG Palmer RE Stark 2002 Titration and exchange studies of liver fatty acid-binding protein with 13C-labeled long-chain fatty acids Biochemistry 41 17 5453 5461 10.1021/bi011914g (Pubitemid 34429380)
21. G Wider D Neri K Wüthrich 1991 Studies of slow conformational equilibria in macromolecules by exchange of heteronuclear longitudinal 2-spin-order in a 2D difference correlation experiment J Biomol NMR 1 93 98 10.1007/BF01874572