NMR spin state exchange spectroscopy reveals equilibrium of two distinct conformations of leucine zipper GCN4 in solution

Journal of the American Chemical Society

Volumn 129, Issue 20, 2007, Pages 6461-6469

  Nikolaev, Yaroslav ^a,c   Pervushin, Konstantin ^a,b,c  

^a ETH ZURICH   (Switzerland)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^c UNIVERSITY OF BASEL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DYNAMIC PROPERTIES; SPIN STATE EXCHANGE; YEAST TRANSCRIPTION;

ACTIVATION ENERGY; CONFORMATIONS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHASE EQUILIBRIA; PROTEIN FOLDING;

AMINO ACIDS;

4 (2 HYDROXYETHYL) 1 PIPERAZINEETHANESULFONIC ACID; [1,3 DIHYDROXY 2 (HYDROXYMETHYL)PROPAN 2 YL]AZANIUM; ACETIC ACID; CARBON 13; NITROGEN 15; PROPANE; PROTON; TRANSCRIPTION FACTOR GCN4; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; DIMERIZATION; MOLECULAR DYNAMICS; NITROGEN NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PH; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; DNA-BINDING PROTEINS; HYDROGEN-ION CONCENTRATION; LEUCINE ZIPPERS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SOLUTIONS; TRANSCRIPTION FACTORS;

EID: 34249053273     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0685295     Document Type: Article

References (64)

1. Landschulz, W. H.; Johnson, P. F.; McKnight, S. L. Science 1988, 240, 1759-64.
2. Murre, C; McCaw, P. S.; Vaessin, H.; Caudy, M.; Jan, L. Y.; Jan, Y. N.; Cabrera, C. V.; Buskin, J. N.; Hauschka, S. D.; Lassar, A. B. Cell 1989, 58, 537-44.
3. Darlington, G. J.; Wang, N.; Hanson, R. W. Curr. Opin. Genet. Dev. 1995, 5, 565-70.
4. Yamaguchi, S.; Mitsui, S.; Yan, L.; Yagita, K.; Miyake, S.; Okamura, H. Mol. Cell. Biol. 2000, 20, 4773-81.
5. Sanyal, S.; Sandstrom, D. J.; Hoeffer, C. A.; Ramaswami, M. Nature 2002, 416, 870-74.
6. Eferl, R.; Sibilia, M.; Hilberg, F.; Fuchsbichler, A.; Kufferath, I.; Guertl, B.; Zenz, R.; Wagner, E. F.; Zatloukal, K. J. Cell Biol. 1999, 145, 1049-61.
7. Tupler, R.; Perini, G.; Green, M. R. Nature 2001, 409, 832-33.
8. Vinson, C; Myakishev, M.; Acharya, A.; Mir, A. A.; Moll, J. R.; Bonovich, M. Mol. Cell. Biol. 2002, 22, 6321-35.
9. Lovett, E. G.; D'Avignon, D. A.; Holtzer, M. E.; Braswell, E. H.; Zhu, D.; Holtzer, A. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 1781-85.
10. Kammerer, R. A.; Jaravine, V. A.; Frank, S.; Schulthess, T.; Landwehr, R.; Lustig, A.; Garcia-Echeverria, C.; Alexandrescu, A. T.; Engel, J.; Steinmetz, M. O. J. Biol. Chem. 2001, 276, 13685-88.
11. Bosshard, H. R.; Durr, E.; Hitz, T.; Jelesarov, I. Biochemistry 2001, 40, 3544-52.
12. Dragan, A. I.; Privalov, P. L. J. Mol. Biol. 2002, 321, 891-908.
13. Wang, T.; Lau, W. L.; DeGrado, W. F.; Gai, F. Biophys. J. 2005, 89, 4180-7.
14. Kammerer, R. A.; Schulthess, T.; Landwehr, R.; Lustig, A.; Engel, J.; Aebi, U.; Steinmetz, M. O. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 13419-24.
15. Frank, S.; Lustig, A.; Schulthess, T.; Engel, J.; Kammerer, R. A. J. Biol. Chem. 2000, 275, 11672-7.
16. O'Shea, E. K.; Klemm, J. D.: Kim, P. S.; Alber. T. Science 1991, 254, 539-44.
17. Saudek, V.; Pastore, A.; Morelli, M. A.; Frank, R.; Gausepohl, H.; Gibson, T. Protein Eng. 1991, 4, 519-29.
18. Holtzer, M. E.; Bretthorst, G. L.; d'Avignon, D. A.; Angeletti, R. H.; Mints, L.; Holtzer, A. Biophys. J. 2001, 80, 939-51.
19. Spek, E. J.; Bui, A. H.; Lu, M.; Kallenbach, N. R. Protein Sci. 1998, 7, 2431-7.
20. Zeng, X.; Herndon, A. M.; Hu, J. C. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 3673-8.
21. Ibarra-Molero, B.; Zitzewitz, J. A.; Matthews. C. R. J. Mol. Biol. 2004, 336, 989-96.
22. Meng, F. G.; Zeng, X. G.; Hong, Y. K.; Zhou, H. M. Biochimie 2001, 83, 953-56.
23. Lumb, K. J.; Kim, P. S. Science 1995, 268, 436-9.
24. Weiss, M. A.; Ellenberger, T.; Wobbe, C. R.; Lee, J. P.; Harrison, S. C; Struhl, K. Nature 1990, 347, 575-8.
25. Holtzer, M. E.; Lovett, E. G.; d'Avignon, D. A.; Holtzer, A. Biophys. J 1997, 73, 1031-41.
26. Wider, G.; Neri, D.; Wuthrich, K. J. Biomol. NMR 1991, 1, 93-98.
27. Sprangers, R.; Gribun, A.; Hwang, P. M.; Houry, W. A.; Kay, L. E. Proc Natl. Acad. Sci. U.S.A. 2005, 102, 16678-83
28. Kay, L. E.; Keifer, P.; Saarinen, T. J. Am. Chem. Soc. 1992, 114, 10663-5.
29. Pervushin, K.; Wider, G.; Wuthrich, K. J. Biomol. NMR 1998, 12, 345-48.
30. Pervushin, K.; Wider, G.; Riek, R.; Wuthrich, K. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 9607-12.
31. Cavanagh, J.; Fairbrother, W. J.; Palmer, A. G.; Skelton, N. J. Protein NMR Spectroscopy: Principles and Practice; Academic Press: New York. 1996.
32. Pervushin, K.; Riek, R.; Wider, G.; Wuthrich, K. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 12366-71.
33. Farrow, N. A.; Zhang, O.; Forman-Kay, J. D.; Kay, L. E. J. Biomol. NMR 1994, 4, 727-34.
34. Zitzewitz, J. A.; Bilsel, O.; Luo, J.; Jones, B. E.; Matthews, C. R. Biochemistry 1995, 34, 12812-9.
35. Wuthrich, K. NMR of Proteins and Nucleic Acids; Wiley: New York, 1986.
36. Lumb, K. J.; Carr, C. M.; Kim, P. S. Biochemistry 1994, 33, 7361-7
37. Myers, J. K.; Oas, T. G. J. Mol. Biol. 1999, 289, 205-9.
38. Zitzewitz, J. A.; Ibarra-Molero, B.; Fishel, D. R.; Terry, K. L.; Matthews C. R. J. Mol. Biol. 2000, 296, 1105-16.
39. Moran, L. B.; Schneider, J. P.; Kentsis. A.; Reddy, G. A.; Sosnick T. R. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 10699-704.
40. Serrano, L.; Matouschek, A.; Fersht, A. R. J. Mol. Biol. 1992, 224 805-18.
41. Deppmann, C. D.: Alvania, R. S.; Taparowsky, E. J. Mol. Biol. Evol. 2006, 23, 1480-92.
42. Agou, F.; Courtois, G.; Chiaravalli, J.; Baleux, F.; Coic, Y. M.; Traincard, F.; Israel, A.; Veron, M. J. Biol. Chem. 2004, 279, 54248-57.
43. Borges-Walmsley, M. I.; Beauchamp, J.; Kelly, S. M.; Jumel, K.; Candlish, D.; Harding, S. E.; Price, N. C; Walmsley, A. R. J. Biol. Chem. 2003, 278, 12903-12.
44. Berg, T.; Cohen, S. B.; Desharnais, J.; Sonderegger, C; Maslyar, D. J.; Goldberg, J.; Boger, D. L.; Vogt, P. K. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 3830-5.
45. Ahmad, A.; Yadav, S. P.; Asthana, N.; Mitra, K.; Srivastava, S. P.; Ghosh, J. K. J. Biol. Chem. 2006, 281, 22029-38.
46. Kataoka, K.; Handa, H.; Nishizawa, M. J. Biol. Chem. 2001, 276, 34074-81.
47. Surh, Y. J.; Kundu, J. K.; Na, H. K.; Lee, J. S. J. Nutr. 2005, 135, 2993S-3001S.
48. Forrer, P.; Jaussi, R. Gene 1998, 224, 45-52.
49. Liepnieks, J. J.; Light, A. J. Biol. Chem. 1979, 254, 1677-83.
50. Edelhoch, H. Biochemistry 1967, 6, 1948-54.
51. Gill, S. C; von Hippel, P. H. Anal. Biochem. 1989, 182, 319-26.
52. Battels, C; Xia, T. H.; Billeter, M.; Guntert, P.; Wuthrich, K. J. Biomol. NMR 1995, 6, 1-10.
53. Keller, R. L. J. The Computer Aided Resonance Assignment Tutorial, 1st ed.; Cantina Verlag: Germany, 2004.
54. Wishart, D. S.; Bigam, C. G.: Yao, J.; Abildgaard, F.; Dyson, H. J.; Oldfield, E.; Markley, J. L.; Sykes, B. D. J. Biomol. NMR 1995, 6, 135-40.
55. McConnell, H. M. J. Chem. Phys. 1958, 28, 430-31.
56. Jeener, J. Adv. Magn. Reson. 1982, 10, 1-51.
57. Kühne, R. O.; Schaffhauser, T.; Wokaun, A.; Ernst, R. R. J. Magn. Reson. 1979, 35, 39-67.
58. Helgstrand, M.; Hard, T.; Allard, P. J. Biomol. NMR 2000, 18, 49-63.
59. Helgstrand, M.; Allard, P. J. Biomol. NMR 2004, 30, 71-80.
60. Deverell, C; Morgan, R. E.; Strange, J. H. Mol. Phys. 1970, 18, 553-59.
61. Bai, N. S.; Ramachandran, R. J. Magn. Reson., Ser. A 1993, 105, 298-303.
62. Canet, D. Prog. Nucl. Magn. Reson. Spectrosc. 1989, 21, 237-91.
63. Loria, J. P.; Rance, M.; Palmer, A. G. J. Am. Chem. Soc. 1999, 121, 2331-2.
64. Cavanagh, J.; Palmer, A. G.; Wright, P. E.; Ranee, M. J. Magn. Reson. 1991, 91, 429-36.