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Volumn 10, Issue 11, 2011, Pages 5070-5083

Subcellular tissue proteomics of hepatocellular Carcinoma for molecular signature discovery

Author keywords

hepatocellular carcinoma; molecular signature; PLGEM; protein localization and translocation; subcellular fractionation; tissue proteomics

Indexed keywords

CYTOSKELETON PROTEIN; TUMOR PROTEIN;

EID: 80655131079     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr2005204     Document Type: Article
Times cited : (36)

References (48)
  • 2
    • 34250020201 scopus 로고    scopus 로고
    • Hepatocellular Carcinoma: Epidemiology and Molecular Carcinogenesis
    • DOI 10.1053/j.gastro.2007.04.061, PII S0016508507007998
    • El-Serag, H. B.; Rudolph, K. L. Hepatocellular carcinoma: epidemiology and molecular carcinogenesis Gastroenterology 2007, 132 (7) 2557-76 (Pubitemid 46890874)
    • (2007) Gastroenterology , vol.132 , Issue.7 , pp. 2557-2576
    • El-Serag, H.B.1    Rudolph, K.L.2
  • 3
    • 33644778515 scopus 로고    scopus 로고
    • Hepatocellular carcinoma: Overcoming challenges in disease management
    • DOI 10.1016/j.cgh.2006.01.001, PII S1542356506000486
    • Gish, R. G. Hepatocellular carcinoma: overcoming challenges in disease management Clin. Gastroenterol. Hepatol. 2006, 4 (3) 252-61 (Pubitemid 43343879)
    • (2006) Clinical Gastroenterology and Hepatology , vol.4 , Issue.3 , pp. 252-261
    • Gish, R.G.1
  • 6
    • 0035876047 scopus 로고    scopus 로고
    • Clinicopathologic features of long-term survivors and disease-free survivors after resection of hepatocellular carcinoma: A study of a prospective cohort
    • Poon, R. T.; Ng, I. O.; Fan, S. T.; Lai, E. C.; Lo, C. M.; Liu, C. L.; Wong, J. Clinicopathologic features of long-term survivors and disease-free survivors after resection of hepatocellular carcinoma: a study of a prospective cohort J. Clin. Oncol. 2001, 19 (12) 3037-44 (Pubitemid 32565441)
    • (2001) Journal of Clinical Oncology , vol.19 , Issue.12 , pp. 3037-3044
    • Poon, R.T.-P.1    Ng, I.O.-L.2    Fan, S.-T.3    Lai, E.C.-S.4    Lo, C.-M.5    Liu, C.-L.6    Wong, J.7
  • 7
    • 7044274430 scopus 로고    scopus 로고
    • Proteomics for hepatocellular carcinoma marker discovery
    • Chignard, N.; Beretta, L. Proteomics for hepatocellular carcinoma marker discovery Gastroenterology 2004, 127 (5 Suppl 1) S120-5
    • (2004) Gastroenterology , vol.127 , Issue.5 SUPPL. 1 , pp. 120-5
    • Chignard, N.1    Beretta, L.2
  • 8
    • 0033960899 scopus 로고    scopus 로고
    • Early detection of hepatocellular carcinoma increases the chance of treatment: Hong kong experience
    • Yuen, M. F.; Cheng, C. C.; Lauder, I. J.; Lam, S. K.; Ooi, C. G.; Lai, C. L. Early detection of hepatocellular carcinoma increases the chance of treatment: Hong Kong experience Hepatology 2000, 31 (2) 330-5 (Pubitemid 30078596)
    • (2000) Hepatology , vol.31 , Issue.2 , pp. 330-335
    • Yuen, M.-F.1    Cheng, C.-C.2    Lauder, I.J.3    Lam, S.-K.4    Ooi, C.G.-C.5    Lai, C.-L.6
  • 9
    • 70350567762 scopus 로고    scopus 로고
    • Comparative analysis of the liver and plasma proteomes as a novel and powerful strategy for hepatocellular carcinoma biomarker discovery
    • Beretta, L. Comparative analysis of the liver and plasma proteomes as a novel and powerful strategy for hepatocellular carcinoma biomarker discovery Cancer Lett. 2009, 286 (1) 134-9
    • (2009) Cancer Lett. , vol.286 , Issue.1 , pp. 134-9
    • Beretta, L.1
  • 10
    • 7044264739 scopus 로고    scopus 로고
    • Alpha-fetoprotein and ultrasonography screening for hepatocellular carcinoma
    • Daniele, B.; Bencivenga, A.; Megna, A. S.; Tinessa, V. Alpha-fetoprotein and ultrasonography screening for hepatocellular carcinoma Gastroenterology 2004, 127 (5 Suppl 1) S108-12
    • (2004) Gastroenterology , vol.127 , Issue.5 SUPPL. 1 , pp. 108-12
    • Daniele, B.1    Bencivenga, A.2    Megna, A.S.3    Tinessa, V.4
  • 14
    • 55249094350 scopus 로고    scopus 로고
    • Quantitative proteomic signature of liver cancer cells: Tissue transglutaminase 2 could be a novel protein candidate of human hepatocellular carcinoma
    • Sun, Y.; Mi, W.; Cai, J.; Ying, W.; Liu, F.; Lu, H.; Qiao, Y.; Jia, W.; Bi, X.; Lu, N.; Liu, S.; Qian, X.; Zhao, X. Quantitative proteomic signature of liver cancer cells: tissue transglutaminase 2 could be a novel protein candidate of human hepatocellular carcinoma J. Proteome Res. 2008, 7 (9) 3847-59
    • (2008) J. Proteome Res. , vol.7 , Issue.9 , pp. 3847-59
    • Sun, Y.1    Mi, W.2    Cai, J.3    Ying, W.4    Liu, F.5    Lu, H.6    Qiao, Y.7    Jia, W.8    Bi, X.9    Lu, N.10    Liu, S.11    Qian, X.12    Zhao, X.13
  • 16
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wisniewski, J. R.; Zougman, A.; Nagaraj, N.; Mann, M. Universal sample preparation method for proteome analysis Nat. Methods 2009, 6 (5) 359-62
    • (2009) Nat. Methods , vol.6 , Issue.5 , pp. 359-62
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 17
    • 31644438577 scopus 로고    scopus 로고
    • Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT)
    • DOI 10.1074/mcp.T500013-MCP200
    • Chen, E. I.; Hewel, J.; Felding-Habermann, B.; Yates, J. R., 3rd Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT) Mol. Cell. Proteomics 2006, 5 (1) 53-6 (Pubitemid 43169340)
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.1 , pp. 53-56
    • Chen, E.I.1    Hewel, J.2    Felding-Habermann, B.3    Yates III, J.R.4
  • 20
    • 77950667827 scopus 로고    scopus 로고
    • Subcellular quantitative proteomics reveals multiple pathway cross-talk that coordinates specific signaling and transcriptional regulation for the early host response to LPS
    • Du, R.; Long, J.; Yao, J.; Dong, Y.; Yang, X.; Tang, S.; Zuo, S.; He, Y.; Chen, X. Subcellular quantitative proteomics reveals multiple pathway cross-talk that coordinates specific signaling and transcriptional regulation for the early host response to LPS J. Proteome Res. 2010, 9 (4) 1805-21
    • (2010) J. Proteome Res. , vol.9 , Issue.4 , pp. 1805-21
    • Du, R.1    Long, J.2    Yao, J.3    Dong, Y.4    Yang, X.5    Tang, S.6    Zuo, S.7    He, Y.8    Chen, X.9
  • 21
    • 35248890380 scopus 로고    scopus 로고
    • Morphological changes and nuclear translocation of DLC1 tumor suppressor protein precede apoptosis in human non-small cell lung carcinoma cells
    • DOI 10.1016/j.yexcr.2007.08.009, PII S0014482707003898
    • Yuan, B. Z.; Jefferson, A. M.; Millecchia, L.; Popescu, N. C.; Reynolds, S. H. Morphological changes and nuclear translocation of DLC1 tumor suppressor protein precede apoptosis in human non-small cell lung carcinoma cells Exp. Cell Res. 2007, 313 (18) 3868-80 (Pubitemid 47561896)
    • (2007) Experimental Cell Research , vol.313 , Issue.18 , pp. 3868-3880
    • Yuan, B.-Z.1    Jefferson, A.M.2    Millecchia, L.3    Popescu, N.C.4    Reynolds, S.H.5
  • 23
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • DOI 10.1021/ac0498563
    • Liu, H.; Sadygov, R. G.; Yates, J. R., 3rd A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal. Chem. 2004, 76 (14) 4193-201 (Pubitemid 38943698)
    • (2004) Analytical Chemistry , vol.76 , Issue.14 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 26
    • 77951460055 scopus 로고    scopus 로고
    • MicroRNA-196 represses Bach1 protein and hepatitis C virus gene expression in human hepatoma cells expressing hepatitis C viral proteins
    • Hou, W.; Tian, Q.; Zheng, J.; Bonkovsky, H. L. MicroRNA-196 represses Bach1 protein and hepatitis C virus gene expression in human hepatoma cells expressing hepatitis C viral proteins Hepatology 2011, 51 (5) 1494-504
    • (2011) Hepatology , vol.51 , Issue.5 , pp. 1494-504
    • Hou, W.1    Tian, Q.2    Zheng, J.3    Bonkovsky, H.L.4
  • 27
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • DOI 10.1021/ac0341261
    • Nesvizhskii, A. I.; Keller, A.; Kolker, E.; Aebersold, R. A statistical model for identifying proteins by tandem mass spectrometry Anal. Chem. 2003, 75 (17) 4646-58 (Pubitemid 37082259)
    • (2003) Analytical Chemistry , vol.75 , Issue.17 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 28
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
    • DOI 10.1021/pr025556v
    • Peng, J.; Elias, J. E.; Thoreen, C. C.; Licklider, L. J.; Gygi, S. P. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome J. Proteome Res. 2003, 2 (1) 43-50 (Pubitemid 36207189)
    • (2003) Journal of Proteome Research , vol.2 , Issue.1 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 29
  • 30
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y.; Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing J. R. Stat. Soc., Ser. B 1995, 57 (1) 289-300
    • (1995) J. R. Stat. Soc., Ser. B , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 33
    • 41649100689 scopus 로고    scopus 로고
    • Mining the plasma proteome for cancer biomarkers
    • DOI 10.1038/nature06916, PII NATURE06916
    • Hanash, S. M.; Pitteri, S. J.; Faca, V. M. Mining the plasma proteome for cancer biomarkers Nature 2008, 452 (7187) 571-9 (Pubitemid 351483371)
    • (2008) Nature , vol.452 , Issue.7187 , pp. 571-579
    • Hanash, S.M.1    Pitteri, S.J.2    Faca, V.M.3
  • 35
    • 25444471841 scopus 로고    scopus 로고
    • Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma
    • Furge, K. A.; Dykema, K. J.; Ho, C.; Chen, X. Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma BMC Genomics 2005, 6 (1) 67
    • (2005) BMC Genomics , vol.6 , Issue.1 , pp. 67
    • Furge, K.A.1    Dykema, K.J.2    Ho, C.3    Chen, X.4
  • 36
    • 0002844767 scopus 로고    scopus 로고
    • Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies
    • Speicher, K. D.; Kolbas, O.; Harper, S.; Speicher, D. W. Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies J. Biomol. Tech. 2000, 11 (2) 74-86
    • (2000) J. Biomol. Tech. , vol.11 , Issue.2 , pp. 74-86
    • Speicher, K.D.1    Kolbas, O.2    Harper, S.3    Speicher, D.W.4
  • 37
    • 0029927505 scopus 로고    scopus 로고
    • Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
    • Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels Anal. Chem. 1996, 68 (5) 850-8
    • (1996) Anal. Chem. , vol.68 , Issue.5 , pp. 850-8
    • Shevchenko, A.1    Wilm, M.2    Vorm, O.3    Mann, M.4
  • 38
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko, A.; Tomas, H.; Havlis, J.; Olsen, J. V.; Mann, M. In-gel digestion for mass spectrometric characterization of proteins and proteomes Nat. Protoc. 2006, 1 (6) 2856-60
    • (2006) Nat. Protoc. , vol.1 , Issue.6 , pp. 2856-60
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 39
    • 0001092477 scopus 로고    scopus 로고
    • Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes
    • Shevchenko, A.; Sunyaev, S.; Liska, A.; Bork, P. Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes Methods Mol. Biol. 2003, 211, 221-34
    • (2003) Methods Mol. Biol. , vol.211 , pp. 221-34
    • Shevchenko, A.1    Sunyaev, S.2    Liska, A.3    Bork, P.4
  • 40
    • 0035943347 scopus 로고    scopus 로고
    • nrb-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs
    • DOI 10.1016/S0092-8674(01)00466-4
    • Zhang, Z.; Carmichael, G. G. The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs Cell 2001, 106 (4) 465-75 (Pubitemid 32786990)
    • (2001) Cell , vol.106 , Issue.4 , pp. 465-475
    • Zhang, Z.1    Carmichael, G.G.2
  • 43
    • 0033200284 scopus 로고    scopus 로고
    • 2+-binding protein, flanks the Wolf-Hirschhorn syndrome (WHS) critical region and is deleted in most WHS patients
    • DOI 10.1006/geno.1999.5881
    • Endele, S.; Fuhry, M.; Pak, S. J.; Zabel, B. U.; Winterpacht, A. LETM1, a novel gene encoding a putative EF-hand Ca(2+)-binding protein, flanks the Wolf-Hirschhorn syndrome (WHS) critical region and is deleted in most WHS patients Genomics 1999, 60 (2) 218-25 (Pubitemid 29463680)
    • (1999) Genomics , vol.60 , Issue.2 , pp. 218-225
    • Endele, S.1    Fuhry, M.2    Pak, S.-J.3    Zabel, B.U.4    Winterpacht, A.5
  • 44
    • 50249158546 scopus 로고    scopus 로고
    • Characterization of the mitochondrial protein LETM1, which maintains the mitochondrial tubular shapes and interacts with the AAA-ATPase BCS1L
    • Tamai, S.; Iida, H.; Yokota, S.; Sayano, T.; Kiguchiya, S.; Ishihara, N.; Hayashi, J.; Mihara, K.; Oka, T. Characterization of the mitochondrial protein LETM1, which maintains the mitochondrial tubular shapes and interacts with the AAA-ATPase BCS1L J. Cell Sci. 2008, 121 (Pt 15) 2588-600
    • (2008) J. Cell Sci. , vol.121 , Issue.PART 15 , pp. 2588-600
    • Tamai, S.1    Iida, H.2    Yokota, S.3    Sayano, T.4    Kiguchiya, S.5    Ishihara, N.6    Hayashi, J.7    Mihara, K.8    Oka, T.9
  • 45
    • 0347359154 scopus 로고    scopus 로고
    • LETM1, a gene deleted in Wolf-Hirschhorn syndrome, encodes an evolutionarily conserved mitochondrial protein
    • DOI 10.1016/j.ygeno.2003.08.013
    • Schlickum, S.; Moghekar, A.; Simpson, J. C.; Steglich, C.; O'Brien, R. J.; Winterpacht, A.; Endele, S. U. LETM1, a gene deleted in Wolf-Hirschhorn syndrome, encodes an evolutionarily conserved mitochondrial protein Genomics 2004, 83 (2) 254-61 (Pubitemid 38050114)
    • (2004) Genomics , vol.83 , Issue.2 , pp. 254-261
    • Schlickum, S.1    Moghekar, A.2    Simpson, J.C.3    Steglich, C.4    O'Brien, R.J.5    Winterpacht, A.6    Endele, S.U.7
  • 47
    • 0029784514 scopus 로고    scopus 로고
    • The Ras GTPase-activating-protein-related human protein IQGAP2 harbors a potential actin binding domain and interacts with calmodulin and Rho family GTPases
    • Brill, S.; Li, S.; Lyman, C. W.; Church, D. M.; Wasmuth, J. J.; Weissbach, L.; Bernards, A.; Snijders, A. J. The Ras GTPase-activating-protein- related human protein IQGAP2 harbors a potential actin binding domain and interacts with calmodulin and Rho family GTPases Mol. Cell. Biol. 1996, 16 (9) 4869-78 (Pubitemid 26272142)
    • (1996) Molecular and Cellular Biology , vol.16 , Issue.9 , pp. 4869-4878
    • Brill, S.1    Li, S.2    Lyman, C.W.3    Church, D.M.4    Wasmuth, J.J.5    Weissbach, L.6    Bernards, A.7    Snijders, A.J.8
  • 48
    • 39749108409 scopus 로고    scopus 로고
    • Development of hepatocellular carcinoma in Iqgap2-deficient mice is IQGAP1 dependent
    • Schmidt, V. A.; Chiariello, C. S.; Capilla, E.; Miller, F.; Bahou, W. F. Development of hepatocellular carcinoma in Iqgap2-deficient mice is IQGAP1 dependent Mol. Cell. Biol. 2008, 28 (5) 1489-502
    • (2008) Mol. Cell. Biol. , vol.28 , Issue.5 , pp. 1489-502
    • Schmidt, V.A.1    Chiariello, C.S.2    Capilla, E.3    Miller, F.4    Bahou, W.F.5


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