Development of primers for improved pcr detection of the potato Zebra chip pathogen, 'Candidatus Liberibacter solanacearum'

Plant Disease

Volumn 95, Issue 12, 2011, Pages 1542-1546

  Ravindran, Aravind ^a   Levy, Julien ^a   Pierson, Elizabeth ^a   Gross, Dennis C ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); CANDIDATUS LIBERIBACTER; EQUUS SUBG. HIPPOTIGRIS; PSYLLIDAE; SOLANUM TUBEROSUM;

EID: 80655123797     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-05-11-0386     Document Type: Article

References (33)

1. Barry, T., Collerman, G., Glennon, M., Dunican, L. K., and Gannon, F. 1991. The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods Appl. 1:51-56.
2. Bové, J. M. 2006. Huanglongbing: a destructive, newly emerging, century-old disease of citrus. J. Plant Pathol. 88:7-37.
3. Crosslin, J. M., and Munyaneza, J. E. 2009. Evidence that the zebra chip disease and the putative causal agent can be maintained in potatoes by grafting and in vitro. Am. J. Pot. Res. 86:183-187.
4. Doyle, J.J., and Doyle, J. L. 1990. Isolation of plant DNA from fresh tissue. Focus 12:13-15.
5. Gharalari, A. H., Nansen, C., Lawson, D. S., Gilley, J., Munyaneza, J. E., and Vaughn, K. 2009. Knockdown mortality, repellency, and residual effect of insecticides for control of adult Bactericera cockerelli (Hemiptera: Psyllidae). J. Econ. Entomol. 102:1032-1038.
6. Hansen, A. K., Trumble, J. T., Stouthamer, R., and Paine, T. D. 2008. A new huanglongbing species, "Candidatus Liberibacter psyllaurous," found to infect tomato and potato, is vectored by the psyllid Bactericera cockerelli (Sulc). Appl. Environ. Microbiol. 74:5862-5865.
7. Jagoueix, S., Bove, J.M., and Garnier, M. 1994. The phloem-limited bacterium of greening disease of citrus is a member of α subdivision of the proteobacteria. Int. J. Syst. Bacteriol. 44:379-386.
8. Jagoueix, S., Bove, J.M., and Garnier, M. 1997. Comparison of the 16S/23S ribosomal intergenic regions "Candidatus Liberobacter asiaticum" and "Candidatus Liberobacter africanum," the two species associated with citrus huanglongbing (greening) disease. Int. J. Syst. Bacteriol. 47:224-227.
9. Leblond-Bourget, N., Philippe, H. O., Mangin, I., and Decaris, B. 1996. 16S rRNA and 16S to 23S internally transcribed spacer sequence reveals inter and intraspecific Bifidobacterium phylogeny. Int. J. Syst. Bacteriol. 46:102-111.
10. Lee, H.Y., and Côté, J. C. 2006. Phylogenetic analysis of γ-proteobacteria inferred from nucleotide sequence comparisons of the house-keeping genes adk, aroE and gdh: comparison with phylogeny inferred from 16S rRNA gene sequences. J. Gen. Appl. Microbiol. 52:147-158.
11. Levy, J., Ravindran, A., Gross, D., Tamborindeguy, C., and Pierson, E. 2011. Translocation of 'Candidatus Liberibacter solanacearum', the zebra chip pathogen, in potato and tomato. Phytopathology 101:1285-1291.
12. Li, W., Abad, J. A., French-Monar, R. D., Rascoe, J., Wen, A., Gudmestad, N. C., Secor, G. A., Lee, I-M, Duan, Y., and Levy, L. 2009. Multiplex realtime PCR for detection, identification and quantification of 'Candidatus Liberibacter solanacearum' in potato plants with zebra chip. J. Microbiol. Methods 78:59-65.
13. Li, W., Hartung, J. S., and Levy, L. 2007. Evaluation of DNA amplification methods for improved detection of "Candidatus Liberibacter species" associated with citrus huanglongbing. Plant Dis. 91:51-58.
14. Liefting, L. W., Perez-Egusquiza, W. Z. C., and Clover, G.R. G. 2008. A new 'Candidatus Liberibacter' species in Solanum tuberosum in New Zea-land. Plant Dis. 92:1474.
15. Liefting, L. W., Sutherland, P. W., Ward, L. I., Paice, K. L., Weir, B. S., and Clover, G. R. G. 2009. A new 'Candidatus Liberibacter' species associated with diseases of Solanaceous crops. Plant Dis. 93:208-214.
16. Liefting, L. W., Weir, B. S., Pennycook, S. R., and Clover, G. R. G. 2009. 'Candidatus Liberibacter solanacearum' associated with plants in the family Solanaceae. Int. J. Syst. Evol. Microbiol. 59:2274-2276.
17. López, M. M., Llop, P., Olmos, A., Marco-Noales, E., Cambra, M., and Bertolini, E. 2009. Are the molecular tools solving the challenges posed by detection of plant pathogenic bacteria and viruses? Curr. Issues Mol. Biol. 11:13-46.
18. Maiden, M. C. J. 2006. Multilocus sequence typing of bacteria. Annu. Rev. Microbiol. 60:561-588.
19. Maiden, M. C. J., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Ur-win, R., Zhang, Q., Zhou, J., Zurth, K., Caugant, D. A., Feavers, I. A., Acht-man, M., and Spratt, B. G. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. USA 95:3140-3145.
20. Munyaneza, J. E., Crosslin, J. M., and Upton, J. E. 2007. Association of Bactericera cockerelli (Homoptera: Psyllidae) with "zebra chip", a new potato disease in southwestern United States and Mexico. J. Econ. Entomol. 100:656-663.
21. Parker, M. A., Lafay, B., Burdon, J. J., and van Berkum, P. 2002. Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium. Microbiology 148:2557-2565.
22. Parkinson, N., Bryant, R., Bew, J., and Elphinstone, J. 2011. Rapid phyloge-netic identification of members of Pseudomonas syringae complex using the rpoD locus. Plant Pathol. 60:338-344.
23. Raddadi, N., Gonella, E., Camerota, C., Pizzinat, A., Tedeschi, R., Crotti, E., Mandrioli, M., Bianco, P. A., Daffonchio, D., and Alma, A. 2011. 'Candidatus Liberibacter europaeus' sp. nov. that is associated with and transmitted by the psyllid Cacopsylla pyri apparently behaves as an endo-phyte rather than a pathogen. Environ. Microbiol. 13:414-426.
24. Santos, S. R., and Ochman, H. 2004. Identification and phylogenetic sorting of bacterial lineages using universally conserved genes and proteins. Environ. Microbiol. 6:754-759.
25. Secor, G. A., V. V. Rivera, J. A. Abad, I. M. Lee, G. R. G. Clover, L. W. Liefting, X. Li, and S. H. De Boer. 2009. Association of 'Candidatus Liberibacter solanacearum' with zebra chip disease of potato established by graft and psyllid transmission, electron microscopy, and PCR. Plant Dis. 93:574-583.
26. Subandiyah, S., Iwanami, T., Tsuyumu, S., and Ieki, H. 2000. Comparison of 16S rDNA and 16S/23S intergenic region sequences among citrus greening organisms in Asia. Plant Dis. 84:15-18.
27. Tatineni, S., Sagaram, U. S., Gowda, S., Robertson, C. J., Dawson, W. O., Iwanami, T., and Wang, N. 2008. In planta distribution of 'Candidatus Liberibacter asiaticus' as revealed by polymerase chain reaction (PCR) and real-time PCR. Phytopathology 98:592-599.
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higguns, D. G. 1997. The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
29. Tomimura, K., Miyata, S. I., Furuya, N., Kubota, K., Okuda, M., Subandi-yah, S., Hung, T. H., Su, H. J., and Iwanami, T. 2009. Evaluation of genetic diversity among 'Candidatus Liberibacter asiaticus' isolates collected in southeast Asia. Phytopathology 99:1062-1069.
30. Turner, S. L., and Young, J. P. W. 2000. The glutamine synthetases of rhizo-bia: phylogenetics and evolutionary implications. Mol. Biol. Evol. 17:309-319.
31. Urwin, R., and Maiden, M. C. J. 2003. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol. 11:479-487.
32. Wang, B., Liu, J., Tian, Z., Song, B., and Xie, C. 2005. Monitoring the expression patterns of potato genes associated with quantitative resistance to late blight during Phytophthora infestans infection using cDNA microar-rays. Plant Sci. 169:1155-1167.
33. Wen, A., Mallik, I., Alvarado, V. Y., Pasche, J. S., Wang, X., Li, W., Levy, L., Lin, H., Scholthof, H. B., Mirkov, T. E., Rush, C. M., and Gudmestad, N. C. 2009. Detection, distribution, and genetic variability of 'Candidatus Liberibacter' species associated with zebra complex disease of potato in North America. Plant Dis. 93:1102-1115.