-
1
-
-
34250836327
-
The multifunctional nucleolus
-
Boisvert, F.M., Koningsbruggen, S., Navascués, J. and Lamond, A.I. (2007) The multifunctional nucleolus. Nat. Rev. Mol. Cell. Biol., 8, 574-585.
-
(2007)
Nat. Rev. Mol. Cell. Biol.
, vol.8
, pp. 574-585
-
-
Boisvert, F.M.1
Koningsbruggen, S.2
Navascués, J.3
Lamond, A.I.4
-
2
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl, M.C., Will, C.L. and Luhrmann, R. (2009) The spliceosome: design principles of a dynamic RNP machine. Cell, 136, 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
3
-
-
77749307457
-
Structural studies of the spliceosome: Blind men and an elephant
-
Newman, A.J. and Nagai, K. (2010) Structural studies of the spliceosome: blind men and an elephant. Curr. Opin. Struct. Biol., 20, 82-89.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 82-89
-
-
Newman, A.J.1
Nagai, K.2
-
4
-
-
57549112237
-
Structural dynamics of the ribosome
-
Korostelev, A., Ermolenko, D.N. and Noller, H.F. (2008) Structural dynamics of the ribosome. Curr. Opin. Chem. Biol., 12, 674-683.
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 674-683
-
-
Korostelev, A.1
Ermolenko, D.N.2
Noller, H.F.3
-
5
-
-
39749138785
-
A structural understanding of the dynamic ribosome machine
-
Steitz, T.A. (2008) A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell. Biol., 9, 242-253.
-
(2008)
Nat. Rev. Mol. Cell. Biol.
, vol.9
, pp. 242-253
-
-
Steitz, T.A.1
-
6
-
-
69949139279
-
Large facilities and the evolving ribosome, the cellular machine for genetic-code translation
-
Yonath, A. (2009) Large facilities and the evolving ribosome, the cellular machine for genetic-code translation. J. Roy. Soc. Interface, 6(Suppl. 5), S575-S585.
-
(2009)
J. Roy. Soc. Interface
, vol.6
, Issue.SUPPL. 5
-
-
Yonath, A.1
-
7
-
-
70349199881
-
Riboswitches: From ancient gene-control systems to modern drug targets
-
Breaker, R.R. (2009) Riboswitches: from ancient gene-control systems to modern drug targets. Future Microbiol., 4, 771-773.
-
(2009)
Future Microbiol.
, vol.4
, pp. 771-773
-
-
Breaker, R.R.1
-
8
-
-
74549174202
-
Determination of riboswitch structures: Light at the end of the tunnel?
-
Serganov, A. (2010) Determination of riboswitch structures: Light at the end of the tunnel? RNA Biol., 7, 98-103.
-
(2010)
RNA Biol.
, vol.7
, pp. 98-103
-
-
Serganov, A.1
-
9
-
-
48249104039
-
Riboswitches: Emerging themes in RNA structure and function
-
Montange, R.K. and Batey, R.T. (2008) Riboswitches: emerging themes in RNA structure and function. Annu. Rev. Biophys., 37, 117-133.
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 117-133
-
-
Montange, R.K.1
Batey, R.T.2
-
10
-
-
71249121480
-
Aptamers and riboswitches: Perspectives in biotechnology
-
Weigand, J.E. and Suess, B. (2009) Aptamers and riboswitches: perspectives in biotechnology. Appl. Microbiol. Biotechnol., 85, 229-236.
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.85
, pp. 229-236
-
-
Weigand, J.E.1
Suess, B.2
-
11
-
-
0029258928
-
Keeping RNA happy
-
Uhlenbeck, O.C. (1995) Keeping RNA happy. RNA, 1, 4-6.
-
(1995)
RNA
, vol.1
, pp. 4-6
-
-
Uhlenbeck, O.C.1
-
12
-
-
35848944120
-
Linkage between substrate recognition and catalysis during cleavage of sarcin/ricin loop RNA by restrictocin
-
Korennykh, A.V., Plantinga, M.J., Correll, C.C. and Piccirilli, J.A. (2007) Linkage between substrate recognition and catalysis during cleavage of sarcin/ricin loop RNA by restrictocin. Biochemistry, 46, 12744-12756.
-
(2007)
Biochemistry
, vol.46
, pp. 12744-12756
-
-
Korennykh, A.V.1
Plantinga, M.J.2
Correll, C.C.3
Piccirilli, J.A.4
-
13
-
-
58149083620
-
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
-
Ditzler, M.A., Rueda, D., Mo, J., Hakansson, K. and Walter, N.G. (2008) A rugged free energy landscape separates multiple functional RNA folds throughout denaturation. Nucleic Acids Res., 36, 7088-7099.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 7088-7099
-
-
Ditzler, M.A.1
Rueda, D.2
Mo, J.3
Hakansson, K.4
Walter, N.G.5
-
14
-
-
48649103008
-
Key labeling technologies to tackle sizeable problems in RNA structural biology
-
Dayie, K.T. (2008) Key labeling technologies to tackle sizeable problems in RNA structural biology. Int. J. Mol Sci., 9, 1214-1240.
-
(2008)
Int. J. Mol Sci.
, vol.9
, pp. 1214-1240
-
-
Dayie, K.T.1
-
15
-
-
18144435106
-
Rapid preparation of RNA samples for NMR spectroscopy and X-ray crystallography
-
Cheong, H.K., Hwang, E., Lee, C., Choi, B.S. and Cheong, C. (2004) Rapid preparation of RNA samples for NMR spectroscopy and X-ray crystallography. Nucleic Acids Res., 32, e84.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Cheong, H.K.1
Hwang, E.2
Lee, C.3
Choi, B.S.4
Cheong, C.5
-
16
-
-
2442638925
-
A general method for rapid and nondenaturing purification of RNAs
-
Kieft, J.S. and Batey, R.T. (2004) A general method for rapid and nondenaturing purification of RNAs. RNA, 10, 988-995.
-
(2004)
RNA
, vol.10
, pp. 988-995
-
-
Kieft, J.S.1
Batey, R.T.2
-
17
-
-
69449104554
-
Preparation of group i introns for biochemical studies and crystallization assays by native affinity purification
-
Vicens, Q., Gooding, A.R., Duarte, L.F. and Batey, R.T. (2009) Preparation of group I introns for biochemical studies and crystallization assays by native affinity purification. PLoS ONE, 4, e6740.
-
(2009)
PLoS ONE
, vol.4
-
-
Vicens, Q.1
Gooding, A.R.2
Duarte, L.F.3
Batey, R.T.4
-
18
-
-
34447527363
-
Improved native affinity purification of RNA
-
Batey, R.T. and Kieft, J.S. (2007) Improved native affinity purification of RNA. RNA, 13, 1384-1389.
-
(2007)
RNA
, vol.13
, pp. 1384-1389
-
-
Batey, R.T.1
Kieft, J.S.2
-
19
-
-
79951574779
-
The ARiBo tag: A reliable tool for affinity purification of RNAs under native conditions
-
Di Tomasso, G., Lampron, P., Dagenais, P., Omichinski, J.G. and Legault, P. (2010) The ARiBo tag: a reliable tool for affinity purification of RNAs under native conditions. Nucleic Acids Res., 39, e18.
-
(2010)
Nucleic Acids Res.
, vol.39
-
-
Di Tomasso, G.1
Lampron, P.2
Dagenais, P.3
Omichinski, J.G.4
Legault, P.5
-
20
-
-
77958599400
-
Nondenaturing purification of co-transcriptionally folded RNA avoids common folding heterogeneity
-
Pereira, M.J., Behera, V. and Walter, N.G. (2010) Nondenaturing purification of co-transcriptionally folded RNA avoids common folding heterogeneity. PLoS ONE, 5, e12953.
-
(2010)
PLoS ONE
, vol.5
-
-
Pereira, M.J.1
Behera, V.2
Walter, N.G.3
-
21
-
-
33846446409
-
Rapid purification of RNAs using fast performance liquid chromatography (FPLC)
-
Kim, I., McKenna, S.A., Viani Puglisi, E. and Puglisi, J.D. (2007) Rapid purification of RNAs using fast performance liquid chromatography (FPLC). RNA, 13, 289-294.
-
(2007)
RNA
, vol.13
, pp. 289-294
-
-
Kim, I.1
McKenna, S.A.2
Viani Puglisi, E.3
Puglisi, J.D.4
-
22
-
-
1942501609
-
Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides
-
Lukavsky, P.J. and Puglisi, J.D. (2004) Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides. RNA, 10, 889-893.
-
(2004)
RNA
, vol.10
, pp. 889-893
-
-
Lukavsky, P.J.1
Puglisi, J.D.2
-
23
-
-
77149143215
-
Rapid, nondenaturing RNA purification using weak anion-exchange fast performance liquid chromatography
-
Easton, L.E., Shibata, Y. and Lukavsky, P.J. (2010) Rapid, nondenaturing RNA purification using weak anion-exchange fast performance liquid chromatography. RNA, 16, 647-653.
-
(2010)
RNA
, vol.16
, pp. 647-653
-
-
Easton, L.E.1
Shibata, Y.2
Lukavsky, P.J.3
-
24
-
-
77951224554
-
Probing adenine rings and backbone linkages using base specific isotope-edited Raman spectroscopy: Application to group II intron ribozyme domain v
-
Chen, Y., Eldho, N.V., Dayie, T.K. and Carey, P.R. (2010) Probing adenine rings and backbone linkages using base specific isotope-edited Raman spectroscopy: application to group II intron ribozyme domain V. Biochemistry, 49, 3427-3435.
-
(2010)
Biochemistry
, vol.49
, pp. 3427-3435
-
-
Chen, Y.1
Eldho, N.V.2
Dayie, T.K.3
Carey, P.R.4
-
25
-
-
0000096835
-
Click Chemistry: Diverse Chemical Function from a Few Good Reactions
-
Kolb, H.C., Finn, M.G. and Sharpless, K.B. (2001) Click Chemistry: Diverse Chemical Function from a Few Good Reactions. Angew. Chem. Int. Ed. Engl., 40, 2004-2021.
-
(2001)
Angew. Chem. Int. Ed. Engl.
, vol.40
, pp. 2004-2021
-
-
Kolb, H.C.1
Finn, M.G.2
Sharpless, K.B.3
-
27
-
-
0003610959
-
A chemically cleavable biotinylated nucleotide: Usefulness in the recovery of protein-DNA complexes from avidin affinity columns
-
Shimkus, M., Levy, J. and Herman, T. (1985) A chemically cleavable biotinylated nucleotide: usefulness in the recovery of protein-DNA complexes from avidin affinity columns. Proc. Natl Acad. Sci. USA, 82, 2593-2597.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 2593-2597
-
-
Shimkus, M.1
Levy, J.2
Herman, T.3
-
28
-
-
0022448876
-
Affinity chromatography of DNA labeled with chemically cleavable biotinylated nucleotide analogs
-
Herman, T.M., Lefever, E. and Shimkus, M. (1986) Affinity chromatography of DNA labeled with chemically cleavable biotinylated nucleotide analogs. Anal. Biochem., 156, 48-55.
-
(1986)
Anal. Biochem.
, vol.156
, pp. 48-55
-
-
Herman, T.M.1
Lefever, E.2
Shimkus, M.3
-
29
-
-
0029206756
-
Preparation of oligonucleotide-biotin conjugates with cleavable linkers
-
Soukup, G.A., Cerny, R.L. and Maher, L.J. 3rd (1995) Preparation of oligonucleotide-biotin conjugates with cleavable linkers. Bioconjug. Chem., 6, 135-138.
-
(1995)
Bioconjug. Chem.
, vol.6
, pp. 135-138
-
-
Soukup, G.A.1
Cerny, R.L.2
Maher Iii, L.J.3
-
30
-
-
0029379566
-
Synthesis and biochemical evaluation of RNA containing an intrahelical disulfide crosslink
-
Allerson, C.R. and Verdine, G.L. (1995) Synthesis and biochemical evaluation of RNA containing an intrahelical disulfide crosslink. Chem. Biol., 2, 667-675.
-
(1995)
Chem. Biol.
, vol.2
, pp. 667-675
-
-
Allerson, C.R.1
Verdine, G.L.2
-
31
-
-
0031799505
-
Photocleavable affinity tags for isolation and detection of biomolecules
-
Olejnik, J., Krzymañska-Olejnik, E. and Rothschild, K.J. (1998) Photocleavable affinity tags for isolation and detection of biomolecules. Methods Enzymol., 291, 135-154.
-
(1998)
Methods Enzymol.
, vol.291
, pp. 135-154
-
-
Olejnik, J.1
Krzymañska-Olejnik, E.2
Rothschild, K.J.3
-
32
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
-
Milligan, J.F., Groebe, D.R., Witherell, G.W. and Uhlenbeck, O.C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nuleic. Acids Res., 15, 8783-8798.
-
(1987)
Nuleic. Acids Res.
, vol.15
, pp. 8783-8798
-
-
Milligan, J.F.1
Groebe, D.R.2
Witherell, G.W.3
Uhlenbeck, O.C.4
-
33
-
-
0029825658
-
Structure of the A site of Escherichia coli 16 S ribosomal RNA complexed with an aminoglycoside antibiotic
-
Fourmy, D., Recht, M.I., Blanchard, S.C. and Puglisi, J.D. (1996) Structure of the A site of Escherichia coli 16 S ribosomal RNA complexed with an aminoglycoside antibiotic. Science, 274, 1367-1371.
-
(1996)
Science
, vol.274
, pp. 1367-1371
-
-
Fourmy, D.1
Recht, M.I.2
Blanchard, S.C.3
Puglisi, J.D.4
-
34
-
-
63549105637
-
The ribozyme core of group II introns: A structure in want of partners
-
Michel, F., Costa, M. and Westhof, E. (2009) The ribozyme core of group II introns: a structure in want of partners. Trends Biochem. Sci., 34, 189-199.
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 189-199
-
-
Michel, F.1
Costa, M.2
Westhof, E.3
-
35
-
-
33748163502
-
Fluorescence and solution NMR study of the active site of a 160-kDa group II intron ribozyme
-
Gumbs, O.H., Padgett, R.A. and Dayie, K.T. (2006) Fluorescence and solution NMR study of the active site of a 160-kDa group II intron ribozyme. RNA, 12, 1693-1707.
-
(2006)
RNA
, vol.12
, pp. 1693-1707
-
-
Gumbs, O.H.1
Padgett, R.A.2
Dayie, K.T.3
-
36
-
-
0032827799
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase
-
Kao, C., Zheng, M. and Rudisser, S. (1999) A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA, 5, 1268-1272.
-
(1999)
RNA
, vol.5
, pp. 1268-1272
-
-
Kao, C.1
Zheng, M.2
Rudisser, S.3
-
37
-
-
0030012860
-
Non-hydrogen bonding terminator nucleosides increase the 30-end homogeneity of enzymatic RNA and DNA synthesis
-
Moran, S., Ren, R.X., Sheils, C.J., Rumney, S. 4th and Kool, E.T. (1996) Non-hydrogen bonding terminator nucleosides increase the 30-end homogeneity of enzymatic RNA and DNA synthesis. Nucleic Acids Res., 24, 2044-2052.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2044-2052
-
-
Moran, S.1
Ren, R.X.2
Sheils, C.J.3
Rumney, I.V.S.4
Kool, E.T.5
-
38
-
-
0023850025
-
Alternative reaction conditions yield novel products
-
Group II intron self-splicing
-
Jarrell, K.A., Peebles, C.L., Dietrich, R.C., Romiti, S.L. and Perlman, P.S. (1988) Group II intron self-splicing. Alternative reaction conditions yield novel products. J. Biol. Chem., 263, 3432-3439.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 3432-3439
-
-
Jarrell, K.A.1
Peebles, C.L.2
Dietrich, R.C.3
Romiti, S.L.4
Perlman, P.S.5
-
39
-
-
13644266857
-
Functional RNA microarrays for high-throughput screening of antiprotein aptamers
-
Collett, J.R., Cho, E.J., Lee, J.F., Levy, M., Hood, A.J., Wan, C. and Ellington, A.D. (2005) Functional RNA microarrays for high-throughput screening of antiprotein aptamers. Anal. Biochem., 338, 113-123.
-
(2005)
Anal. Biochem.
, vol.338
, pp. 113-123
-
-
Collett, J.R.1
Cho, E.J.2
Lee, J.F.3
Levy, M.4
Hood, A.J.5
Wan, C.6
Ellington, A.D.7
-
40
-
-
33646151631
-
Universal initiator nucleotides for the enzymatic synthesis of 50-amino-and 50-thiol-modified RNA
-
Schlatterer, J.C. and Jäschke, A. (2006) Universal initiator nucleotides for the enzymatic synthesis of 50-amino-and 50-thiol-modified RNA. Biochem. Biophys. Res. Commun., 344, 887-892.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.344
, pp. 887-892
-
-
Schlatterer, J.C.1
Jäschke, A.2
-
41
-
-
56349146400
-
Synthesis of biotin-AMP conjugate for 50 biotin labeling of RNA through one-step in vitro transcription
-
Huang, F., He, J., Zhang, Y. and Guo, Y. (2008) Synthesis of biotin-AMP conjugate for 50 biotin labeling of RNA through one-step in vitro transcription. Nat. Protoc., 3, 1848-1861.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1848-1861
-
-
Huang, F.1
He, J.2
Zhang, Y.3
Guo, Y.4
-
42
-
-
46849118299
-
Photocleavable initiator nucleotide substrates for an aldolase ribozyme
-
Fusz, S., Srivatsan, S.G., Ackermann, D. and Famulok, M. (2008) Photocleavable initiator nucleotide substrates for an aldolase ribozyme. J. Org. Chem., 73, 5069-5077.
-
(2008)
J. Org. Chem.
, vol.73
, pp. 5069-5077
-
-
Fusz, S.1
Srivatsan, S.G.2
Ackermann, D.3
Famulok, M.4
-
43
-
-
70349294104
-
RNA biophysics has come of age
-
Uhlenbeck, O.C. (2009) RNA biophysics has come of age. Biopolymers, 91, 811-814.
-
(2009)
Biopolymers
, vol.91
, pp. 811-814
-
-
Uhlenbeck, O.C.1
|