Flavobacterium chungbukense sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 11, 2011, Pages 2734-2739

  Lim, Chae Sung ^a   Oh, Yong Sik ^a   Lee, Jae Kwan ^a   Park, A Rum ^a   Yoo, Jae Soo ^a   Rhee, Sung Keun ^a   Roh, Dong Hyun ^a  

^a Chungbuk National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; CHITIN; FARNOQUINONE; FATTY ACID; OXIDOREDUCTASE; PECTIN; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; ENZYME ACTIVITY; FLAVOBACTERIA; FLAVOBACTERIUM CHUNGBUKENSE; FLAVOBACTERIUM GLACIEI; FLAVOBACTERIUM JOHNSONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SOIL;

BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FLAVOBACTERIUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); FLAVOBACTERIACEAE; FLAVOBACTERIUM; FLAVOBACTERIUM JOHNSONIAE;

EID: 80355136935     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028563-0     Document Type: Article

References (40)

1. Bergey, D. H., Harrison, F. C., Breed, R. S., Hammer, B. W. & Huntoon, F. M. (editors) (1923). Bergey's Manual of Determinative Bacteriology. Baltimore: Williams & Wilkins.
2. Bernardet, J.-F. & Bowman, J. (2006). The genus Flavobacterium. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 481-531. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
3. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
4. Bernardet, J.-F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
5. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
6. Euzéby, J. P. (1997). List of bacterial names with standing in nomenclature: a folder available on the Internet. Int J Syst Bacteriol 47, 590-592.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
9. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
10. Felsenstein, J. (1993). PHYLIP (phylogeny inference package) version 3.5.1. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
13. Horn, M. A., Ihssen, J., Matthies, C., Schramm, A., Acker, G. & Drake, H. L. (2005). Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. Int J Syst Evol Microbiol 55, 1255-1265.
14. Jayanth, K., Jeyasekaran, G. & Shakila, R. J. (2002). Isolation of marine bacteria, antagonistic to human pathogens. Indian J Mar Sci 31, 39-44.
15. Kim, B.-Y., Weon, H.-Y., Cousin, S., Yoo, S.-H., Kwon, S.-W., Go, S.-J. & Stackebrandt, E. (2006). Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. Int J Syst Evol Microbiol 56, 1645-1649.
16. Kim, J.-H., Kim, K.-Y. & Cha, C.-J. (2009). Flavobacterium chungangense sp. nov., isolated from a freshwater lake. Int J Syst Evol Microbiol 59, 1754-1758.
17. Kim, J. J., Jin, H. M., Lee, H. J., Jeon, C. O., Kanaya, E., Koga, Y., Takano, K. & Kanaya, S. (2011). Flavobacterium banpakuense sp. nov., isolated from leaf-and-branch compost. Int J Syst Evol Microbiol 61, 1595-1600.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
19. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
20. Liu, H., Liu, R., Yang, S.-Y., Gao, W.-K., Zhang, C.-X., Zhang, K.-Y. & Lai, R. (2008). Flavobacterium anhuiense sp. nov., isolated from field soil. Int J Syst Evol Microbiol 58, 756-760.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Park, J. W., Oh, Y. S., Lim, J. Y. & Roh, D. H. (2006). Isolation and characterization of cold-adapted strains producing b-galactosidase. J Microbiol 44, 396-402.
23. Park, M., Ryu, S. H., Vu, T. H., Ro, H.-S., Yun, P.-Y. & Jeon, C. O. (2007). Flavobacterium defluvii sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 57, 233-237.
24. Qu, J.-H., Yuan, H.-L., Li, H.-F. & Deng, C.-P. (2009). Flavobacterium cauense sp. nov., isolated from sediment of a eutrophic lake. Int J Syst Evol Microbiol 59, 2666-2669.
25. Reichenbach, H. (1989). Genus Cytophaga Winogradsky 1929. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2015-2050. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
26. Reichenbach, H. (1991). The order Cytophagales. In The Prokaryotes, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, DE: MIDI Inc.
29. Schillinger, U. & Lücke, F. K. (1989). Antibacterial activity of Lactobacillus sake isolated from meat. Appl Environ Microbiol 55, 1901-1906.
30. Stanier, R. Y. (1947). Studies on non-fruiting myxobacteria. I. Cytophaga johnsonae n. sp., a chitin-decomposing myxobacterium. J Bacteriol 53, 297-315.
31. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
32. Van Trappen, S., Mergaert, J. & Swings, J. (2003). Flavobacterium gelidilacus sp. nov., isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 53, 1241-1245.
33. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2005). Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 55, 769-772.
34. Wayne, L.G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
35. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
36. Wilson, K. (1994). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 241-245. Edited by F. M. Ausubel, J. G. Seidman & K. S. Struhl. New York: John Wiley & Sons.
37. Yamaguchi, S. & Yokoe, M. (2000). A novel protein-deamidating enzyme from Chryseobacterium proteolyticum sp. nov., a newly isolated bacterium from soil. Appl Environ Microbiol 66, 3337-3343.
38. Yi, H., Oh, H.-M., Lee, J.-H., Kim, S.-J. & Chun, J. (2005). Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic. Int J Syst Evol Microbiol 55, 637-641.
39. Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2006). Flavobacterium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 997-1000.
40. Zhang, D.-C., Wang, H.-X., Liu, H.-C., Dong, X.-Z. & Zhou, P.-J. (2006). Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier. Int J Syst Evol Microbiol 56, 2921-2925.