Flavobacterium defluvii sp. nov., isolated from activated sludge

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 2, 2007, Pages 233-237

  Park, Minjeong ^a   Ryu, Seung Hyun ^a   Vu, Thu Huong Thi ^a   Ro, Hyeon Su ^a   Yun, Pil Yong ^b   Jeon, Che Ok ^a  

^a Gyeongsang National University   (South Korea)

^b Jeju Hi Tech Industry Development Institute   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GENOMIC DNA; GUANINE; ISOPRENOID; PHOSPHATIDYLETHANOLAMINE; RNA 16S;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CELL MOTILITY; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; FLAVOBACTERIUM; FLAVOBACTERIUM DEFLUVII; FLAVOBACTERIUM JOHNSONIAE; LIPID COMPOSITION; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; TAXONOMIC IDENTIFICATION; TEMPERATURE DEPENDENCE; WASTE WATER TREATMENT PLANT;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIUM; GENES, RRNA; HYDROGEN-ION CONCENTRATION; KOREA; MOLECULAR SEQUENCE DATA; MOVEMENT; NUCLEIC ACID HYBRIDIZATION; PHOSPHATIDYLETHANOLAMINES; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; TEMPERATURE; WATER MICROBIOLOGY;

FLAVOBACTERIUM; FLAVOBACTERIUM JOHNSONIAE; NEGIBACTERIA;

EID: 33847213935     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64669-0     Document Type: Article

References (33)

1. Anderson, R. L. & Ordal, E. J. (1961). Cytophaga succinicans sp. n., a facultatively anaerobic, aquatic myxobacterium. J Bacteriol 81, 130-138.
2. Aslam, Z., Im, W. T., Kim, M. K. & Lee, S. T. (2005). Flavobacterium granuli sp. nov., isolated from granules used in a wastewater treatment plant. Int J Syst Evol Microbiol 55, 747-751.
3. Bernardet, J.-F., Segers, P., Vancanneyt M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
4. Bernardet J. F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
5. Cole, J. R., Chai, B., Marsh, T. L., Farris, R. J., Wang, O., Kulam, S. A., Chandra, S., McGarrell, D. M., Schmidt T. M. & other authors (2003). The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442-443.
6. Felsenstein, J. (2002). PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
7. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt. Washington, DC: American Society for Microbiology.
8. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
9. 2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. Int J Syst Evol Microbiol 55, 1255-1265.
10. Humphry, D. R., George, A., Black, G. W. & Cummings, S. P. (2001). Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica. Int J Syst Evol Microbiol 51, 1235-1243.
11. Jeon, C. O., Lim, J. M., Lee, J. M., Xu, L. H., Jiang, C. L. & Kim, C. J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
12. Kim, B. Y., Weon, H. Y., Cousin, S., Yoo, S. H., Kwon, S. W., Go, S. J. & Stackebrandt, E. (2006). Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. Int J Syst Evol Microbiol 56, 1645-1649.
13. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
14. Komagata, K. & Suzuki, K (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-208.
15. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
16. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbial 19, 1-67.
17. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
18. Lim, J. M., Jeon, C. O., Park, D. J., Kim, H. R., Yoon, B. J. & Kim, C. J. (2005). Pontibacillus marinus sp. nov., a moderately halophilic bacterium from a solar saltern, and emended description of the genus Pontibacillus. Int J Syst Evol Microbiol 55, 1027-1031.
19. McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] saleyens as Salegentibacter saleyens gen. nov., comb. nov, Int J Syst Evol Microbiol 50, 1055-1063.
20. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning. a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
21. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont P. A. D., Kämpfer, P., Maiden, M. C. J., Nesme, X., Rosselló-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
22. Stanier, R. Y. (1947). Studies on nonfruiting myxobacteria. I Cytophaga johnsonae, n. sp., a chitin-decomposing myxobacterium. J Bacteriol 53, 297-315.
23. Strohl, W. R. & Tait, L. R. (1978). Cytophaga aquatilis sp. nov., a facultative anaerobe isolated from the gills of freshwater fish. Int J Syst Bacteriol 28, 293-303.
24. Tamaki, H., Hanada, S., Kamagata, Y., Nakamura, K., Nomura, N., Nakano, K. & Matsumura, M. (2003). Flavobacterium limicola sp. nov., a psychrophilic, organic-polymer-degrading bacterium isolated from freshwater sediments. Int J Syst Evol Microbiol 53, 519-526.
25. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
26. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
27. Van Trappen, S., Mergaert J., Van Eygen, S., Dawyndt, P., Cnockaert, M. C. & Swings, J. (2002). Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes. Syst Appl Microbiol 25, 603-610.
28. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Flavobacterium deyerlachei sp. nov., Flavobacterium frigoris sp. nov. and Flavobacterium micromati sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 85-92.
29. Van Trappen, S., Vandecandelaere, I., Mergaert J. & Swings, J. (2005). Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 55, 769-772.
30. Wang, Z.-W., Liu, Y.-H., Dai, X., Wang, B.-J., Jiang, C.-Y. & Liu, S.-J. (2006). Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment. Int J Syst Evol Microbiol 56, 439-442.
31. Yi, H. & Chun, J (2006). Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic. Int J Syst Evol Microbiol 56, 1239-1244.
32. Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2006). Flavobacterium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 997-1000.
33. Zhu, F., Wang, S. & Zhou, P. (2003). Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier. Int J Syst Evol Microbiol 53, 853-857.