Flavobacterium gelidilacus sp. nov., isolated from microbial mats in Antarctic lakes

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 5, 2003, Pages 1241-1245

  Van Trappen, Stefanie ^a   Mergaert, Joris ^a   Swings, Jean ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA; FATTY ACID; GENOMIC DNA; GUANINE; PALINDROMIC DNA; RNA 16S;

ANTARCTICA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL STRUCTURE; DNA DNA HYBRIDIZATION; DNA FINGERPRINTING; DNA RECOMBINATION; FLAVOBACTERIUM; FLAVOBACTERIUM FLEVENSE; FLAVOBACTERIUM GELIDILACUS; FLAVOBACTERIUM TEGETINCOLA; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC SIMILARITY; GENUS; LAKE; LIPID COMPOSITION; MICROBIAL MAT; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

ANTARCTIC REGIONS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIUM; FRESH WATER; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); FLAVOBACTERIUM; FLAVOBACTERIUM FLEVENSE; FLAVOBACTERIUM GELIDILACUS; NEGIBACTERIA; PROKARYOTA;

EID: 0141614743     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02583-0     Document Type: Article

References (24)

1. Anacker, R. L. & Ordal, E. J. (1955). Study of a bacteriophage infecting the myxobacterium Chondrococcus columnaris. J Bacteriol 70, 738-741.
2. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
4. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Humphry, D. R., George, A., Black, G. W. & Cummings, S. P. (2001). Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica. Int J Syst Evol Microbiol 51, 1235-1243.
7. Kirchman, D. L. (2002). The ecology of Cytophaga-Flavobacterium in aquatic environments. FEMS Microbiol Ecol 39, 91-100.
8. McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 1055-1063.
9. Mergaert, J., Verhelst, A., Cnockaert, M. C., Tan, T.-L. & Swings, J. (2001). Characterization of facultative oligotrophic bacteria from polar seas by analysis of their fatty acids and 16S rDNA sequences. Syst Appl Microbiol 24, 98-107.
10. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
11. Paton, A. M. (1959). An improved method for preparing pectate gels. Nature 183, 1812-1813.
12. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
13. Rademaker, J. L. W. & de Bruijn, F. J. (1997). Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer assisted pattern analysis. In DNA Markers: Protocols, Applications and Overviews, pp. 151-171. Edited by G. Caetano-Anollés & P. M. Gresshoff. New York: Wiley.
14. Rademaker, J. L. W., Hoste, B., Louws, F. J., Kersters, K., Swings, J., Vauterin, L., Vauterin, P. & de Bruijn, F. J. (2000). Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system. Int J Syst Evol Microbiol 50, 665-677.
15. AL. In Bergey's Manual of Systematic Bacteriology, Vol. 3, pp. 2011-2013. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
16. Reichenbach, H. & Dworkin, M. (1981). Introduction to the gliding bacteria. In The Prokaryotes, Vol. 1, pp. 315-327. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
17. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
19. Van Trappen, S., Mergaert, J. & Swings, J. (2001). Genomic diversity of heterotrophic bacteria in microbial mats from Antarctic lakes. In Abstracts of the 8th SCAR International Biology Symposium: Antarctic Biology in a Global Context, Amsterdam. Abstract no. S5O09.
20. Van Trappen, S., Mergaert, J., Van Eygen, S., Dawyndt, P., Cnockaert, M. C. & Swings, J. (2002). Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes. Syst Appl Microbiol 25, 603-610.
21. Versalovic, J., Koeuth, T. & Lupski, J. R. (1991). Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting in bacterial genomes. Nucleic Acids Res 19, 6823-6831.
22. Versalovic, J., Schneider, M., de Bruijn, F. J. & Lupski, J. R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
24. West, P. A. & Colwell, R. R. (1984). Identification and classification of the Vibrionaceae - an overview. In Vibrios in the Environment, pp. 285-363. Edited by R. R. Colwell. New York: Wiley.