Gd(III) chelates as NMR probes of protein-protein interactions. Case study: Rubredoxin and cytochrome c 3

Inorganic Chemistry

Volumn 50, Issue 21, 2011, Pages 10600-10607

  Almeida, Rui M ^a   Geraldes, Carlos F G C ^b   Pauleta, Sofia R ^a   Moura, José J G ^a  

^a UNIVERSIDADE NOVA DE LISBOA   (Portugal)

^b UNIVERSITY OF COIMBRA   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

1,4,7,10 TETRAAZACYCLODODECANE; BACTERIAL PROTEIN; CHELATING AGENT; CYTOCHROME C; CYTOCHROME C(3); GADOLINIUM; HEME; HETEROCYCLIC COMPOUND; RUBREDOXIN;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; DESULFOVIBRIO GIGAS; METABOLISM; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHYSICAL CHEMISTRY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN;

BACTERIAL PROTEINS; BINDING SITES; CHELATING AGENTS; CHEMISTRY, PHYSICAL; CYTOCHROME C GROUP; DESULFOVIBRIO GIGAS; GADOLINIUM; HEME; HETEROCYCLIC COMPOUNDS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN INTERACTION DOMAINS AND MOTIFS; RUBREDOXINS;

EID: 80155213373     PISSN: 00201669     EISSN: None     Source Type: Journal    
DOI: 10.1021/ic200858c     Document Type: Article

References (57)

1. Bertini, I.; Luchinat, C. Coord. Chem. Rev. 1996, 150, 77-110
2. Bertini, I.; Luchinat, C.; Parigi, G. Solution NMR of Paramagnetic Molecules. In Current Methods in Inorganic Chemstry; Elsevier: Amsterdam, 2001; Vol. 2.
3. Peters, J. A.; Huskens, J.; Raber, D. J. Prog. Nucl. Magn. Reson. Spectrosc. 1996, 28, 283-350
4. Allegrozzi, M.; Bertini, I.; Janik, M. B.; Lee, M.-Y.; Luchinat, C. J. Am. Chem. Soc. 2000, 122 (17) 4154-4161
5. Clore, G. M.; Iwahara, J. Chem. Rev. 2009, 109 (9) 4108-4139
6. Yagi, H.; Loscha, K. V.; Su, X. C.; Stanton-Cook, M.; Huber, T.; Otting, G. J. Biomol. NMR 2010, 47 (2) 143-153
7. Bertini, I.; Janik, M. B.; Lee, Y. M.; Luchinat, C.; Rosato, A. J. Am. Chem. Soc. 2001, 123 (18) 4181-4188
8. Geraldes, C. F.; Luchinat, C. Met. Ions Biol. Syst. 2003, 40, 513-588
9. Banci, L.; Bertini, I.; Bren, M. A.; Cremonini, M. A.; Gray, H. B.; Luchinat, C.; Turano, P. J. Biol. Inorg. Chem. 1996, 1, 117-126
10. Bentrop, D.; Bertini, I.; Luchinat, C.; Nitschke, W.; Muhlenhoff, U. Biochemistry 1997, 36 (44) 13629-13637
11. Bertini, I.; Felli, I. C.; Luchinat, C. J. Biomol. NMR 2000, 18, 347-355
12. Bertini, I.; Janik, M. B.; Liu, G.; Luchinat, C.; Rosato, A. J. Magn. Reson. 2001, 148 (1) 23-30
13. Pintacuda, G.; Otting, G. J. Am. Chem. Soc. 2002, 124 (3) 372-373
14. Pintacuda, G.; Park, A. Y.; Keniry, M. A.; Dixon, N. E.; Otting, G. J. Am. Chem. Soc. 2006, 128 (11) 3696-3702
15. Su, X. C.; Liang, H.; Loscha, K. V.; Otting, G. J. Am. Chem. Soc. 2009, 131 (30) 10352-10353
16. Clore, G. M.; Tang, C.; Iwahara, J. Curr. Opin. Struct. Biol. 2007, 17 (5) 603-616
17. Kleckner, I. R. and Foster, M. P. Biochim. Biophys. Acta 2011, 1814 (8) 942-968
18. Saio, T.; Yokochi, M.; Kumeta, H.; Inagaki, F. J. Biomol. NMR 2010, 46 (4) 271-280
19. Donaldson, L. W.; Skrynnikov, N. R.; Choy, W. Y.; Muhandiram, D. R.; Sarkar, B.; Forman-Kay, J. D.; Kay, L. E. J. Am. Chem. Soc. 2001, 123 (40) 9843-9847
20. Feeney, J.; Birdsall, B.; Bradbury, A. F.; Biekofsky, R. R.; Bayley, P. M. J. Biomol. NMR 2001, 21 (1) 41-48
21. Ikegami, T.; Verdier, L.; Sakhaii, P.; Grimme, S.; Pescatore, B.; Saxena, K.; Fiebig, K. M.; Griesinger, C. J. Biomol. NMR 2004, 29 (3) 339-349
22. Martin, L. J.; Hahnke, M. J.; Nitz, M.; Wohnert, J.; Silvaggi, N. R.; Allen, K. N.; Schwalbe, H.; Imperiali, B. J. Am. Chem. Soc. 2007, 129 (22) 7106-7113
23. Pintacuda, G.; John, M.; Su, X. C.; Otting, G. Acc. Chem. Res. 2007, 40 (3) 206-212
24. Prudencio, M.; Rohovec, J.; Peters, J. A.; Tocheva, E.; Boulanger, M. J.; Murphy, M. E.; Hupkes, H. J.; Kosters, W.; Impagliazzo, A.; Ubbink, M. Chemistry 2004, 10 (13) 3252-3260
25. Su, X. C.; Otting, G. J. Biomol. NMR 2010, 46 (1) 101-112
26. Vlasie, M. D.; Comuzzi, C.; van den Nieuwendijk, A. M.; Prudencio, M.; Overhand, M.; Ubbink, M. Chemistry 2007, 13 (6) 1715-1723
27. Xu, X.; Keizers, P. H.; Reinle, W.; Hannemann, F.; Bernhardt, R.; Ubbink, M. J. Biomol. NMR 2009, 43 (4) 247-254
28. Almeida, R. M.; Pauleta, S. R.; Moura, I.; Moura, J. J. G. J. Inorg. Biochem. 2009, 103 (9) 1245-1253
29. Tam, S. C.; Williams, R. J. P. Struct. Bonding (Berlin) 1985, 63, 103-151
30. Arean, C. O.; Moore, G. R.; Williams, G.; Williams, R. J. P. Eur. J. Biochem. 1988, 173 (3) 607-615
31. Eley, C. G.; Moore, G. R.; Williams, G.; Williams, R. J. P. Eur. J. Biochem. 1982, 124 (2) 295-303
32. Dalgarno, D. C.; Price, H. P.; Levine, B. A.; Trayer, I. P. Biochim. Biophys. Acta 1982, 707, 81-88
33. Liepinsh, E.; Baryshev, M.; Sharipo, A.; Ingelman-Sundberg, M.; Otting, G.; Mkrtchian, S. Structure 2001, 9 (6) 457-4571
34. Petros, A. M.; Mueller, L.; Kopple, K. D. Biochemistry 1990, 29 (43) 10041-10048
35. Sattler, M.; Fesik, S. J. Am. Chem. Soc. 1997, 119 (33) 7885-7886
36. Aime, S.; D'Amelio, N.; Fragai, M.; Lee, Y. M.; Luchinat, C.; Terreno, E.; Valensin, G. J. Biol. Inorg. Chem. 2002, 7 (6) 617-622
37. Dick, L. R.; Geraldes, C. F.; Sherry, A. D.; Gray, C. W.; Gray, D. M. Biochemistry 1989, 28 (19) 7896-7904
38. Folkers, P. J.; van Duynhoven, J. P.; van Lieshout, H. T.; Harmsen, B. J.; van Boom, J. H.; Tesser, G. I.; Konings, R. N.; Hilbers, C. W. Biochemistry 1993, 32 (36) 9407-9416
39. Aime, S.; Barge, A.; Botta, M.; de Sousa, A. S.; Parker, D. Angew. Chem., Int. Ed 1998, 37, 2673-2675
40. Desreux, J. F. Inorg. Chem. 1980, 19 (5) 1319-1324
41. Geraldes, C. F. C. G.; Sherry, A. D.; Kiefer, G. E. J. Magn. Reson. 1992, 97, 290-304
42. Lazar, I.; Hrncir, D. C.; Kim, W. D.; Kiefer, G. E.; Sherry, A. D. Inorg. Chem. 1992, 31 (21) 4422-4424
43. Barge, A.; Cravotto, G.; Gianolio, E.; Fedeli, F. Contrast Media Mol. Imaging 2006, 1 (5) 184-188
44. Garrett, D. S.; Seok, Y. J.; Peterkofsky, A.; Clore, G. M.; Gronenborn, A. M. Biochemistry 1997, 36 (15) 4393-4398
45. Berger, S.; Braun, S., 200 and More NMR Experiments: A Practical Course; Wiley-VCH: New York, 2004; p 854.
46. Trott, O.; Olson, A. J. J. Comput. Chem. 2010, 31 (2) 455-461
47. Stewart, D. E.; Wampler, J. E. Proteins 1991, 11 (2) 142-152
48. Bertini, I.; Turano, P.; Vila, A. J. Chem. Rev. 1993, 93 (8) 2833-2932
49. Otting, G. J. Biomol. NMR 2008, 42 (1) 1-9
50. Crowley, P. B.; Carrondo, M. A. Proteins 2004, 55 (3) 603-612
51. Lo Conte, L.; Chothia, C.; Janin, J. J. Mol. Biol. 1999, 285 (5) 2177-2198
52. Caravan, P. Chem. Soc. Rev. 2006, 35 (6) 512-523
53. Thompson, A. L.; Parker, D.; Fulton, D. A.; Howard, J. A.; Pandya, S. U.; Puschmann, H.; Senanayake, K.; Stenson, P. A.; Badari, A.; Botta, M.; Avedano, S.; Aime, S. Dalton Trans. 2006, 47, 5605-5616
54. Otting, G. Annu. Rev. Biophys. 2010, 39, 387-405
55. Pettersen, E. F.; Goddard, T. D.; Huang, C. C.; Couch, G. S.; Greenblatt, D. M.; Meng, E. C.; Ferrin, T. E. J. Comput. Chem. 2004, 25 (13) 1605-1612
56. Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M., Jr; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117 (19) 5179-5197
57. Wang, J.; Wang, W.; Kollman, P. A.; Case, D. A. J. Mol. Graph. Model 2006, 25 (2) 247-260