A paramagnetic probe to localize residues next to carboxylates on protein surfaces

Journal of Biological Inorganic Chemistry

Volumn 7, Issue 6, 2002, Pages 617-622

  Aime, Silvio ^b   D'Amelio, Nicola ^c   Fragai, Marco ^a   Lee, Yong Min ^a   Luchinat, Claudio ^a   Terreno, Enzo ^b   Valensin, Gianni ^c  

^a UNIVERSITY OF FLORENCE   (Italy)

^b UNIVERSITY OF TURIN   (Italy)

^c UNIVERSITY OF SIENA   (Italy)

Author keywords

DO3A; Paramagnetic probe; Protein surface

Indexed keywords

CALBINDIN; CARBOXYLIC ACID DERIVATIVE; GADOLINIUM; LANTHANIDE; LIGAND; OXYGEN;

ARTICLE; BINDING SITE; CHELATION; ELECTRON SPIN RESONANCE; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTON NUCLEAR MAGNETIC RESONANCE; SURFACE PROPERTY;

ALGORITHMS; ANIMALS; BINDING SITES; CALCIUM; CALCIUM-BINDING PROTEIN, VITAMIN D-DEPENDENT; CARBOXYLIC ACIDS; CATTLE; GADOLINIUM; LIGANDS; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; ORGANOMETALLIC COMPOUNDS; PROTEIN CONFORMATION; SURFACE PROPERTIES;

EID: 0036942344     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-002-0340-8     Document Type: Article

References (48)

1. Esposito G, Lesk AM, Molinari H, Motta A, Niccolai N, Pastore A (1992) J Mol Biol 224:659-670
2. Scarselli M, Bernini A, Segoni C, Molinari H, Esposito G, Lesk AM, Laschi F, Temussi P, Niccolai N (1999) J Biomol NMR 15:125-133
3. Yuan T, Ouyang H, Vogel HJ (1999) J Biol Chem 274:8411-8420
4. Kosen PA, Scheek RM, Naderi H, Basus VJ, Manogaran S, Schmidt PG, Oppenheimer NJ, Kuntz ID (1986) Biochemistry 25:2356-2364
5. De Jong EAM, Claesen CAA, Daemen CJM, Harmsen BJM, Konings RNH, Tesser GI, Hilbers CW (1988) J Magn Reson 80:197-213
6. Rehmann JP, Barton JK (1990) Biochemistry 29:1710-1717
7. Ramos A, Varani G (1998) J Am Chem Soc 120:10992-10993
8. Dunham SU, Turner CJ, Lippard SJ (1998) J Am Chem Soc 120:5395-5406
9. Kechuan T, Gochin M (1999) J Am Chem Soc 121:9276-9285
10. Battiste JL, Wagner G (2000) Biochemistry 39:5355-5365
11. Dick LR, Geraldes CFGC, Sherry AD, Gray CW, Gray DM (1989) Biochemistry 18:7896-7904
12. McDonald CC, Phillips WD (1969) Biochem Biophys Res Commun 35:43-51
13. Sherry AD, Teherani J (1983) J Biol Chem 258:8663-8669
14. Lane AN, Jardetzky O (1985) Eur J Biochem 152:411-418
15. Reuben J (1971) Biochemistry 10:2834-2838
16. Agresti DG, Lenkinski RE, Glickson JD (1977) Biochem Biophys Res Commun 76:711-719
17. Kopple KD, Zhu XH (1983) J Am Chem Soc 105:7742-7746
18. Kemple MD, Ray BD, Lipkowitz KB, Prendergast FG, Rao BDN (1988) J Am Chem Soc 110:7863-7888
19. Petros AM, Mueller L, Kopple KD (1990) Biochemistry 29:10041-10048
20. Liepinsh E, Baryshev M, Sharipo A, Ingelman-Sundberg M, Otting G, Mkrtchian S (2001) Structure 9:457-471
21. Yocom KM, Shelton JR, Schroeder WA, Worosila G, Isied SS, Bordignon E, Gray HB (1982) Proc Natl Acad Sci USA 79:7052-7055
22. Aime S, Botta M, Geninatti Crich S, Giovenzana G, Pagliarin R, Sisti M, Terreno E (1998) Magn Reson Chem 36:S200-S208
23. Bruce JI, Dickins RS, Govenlock LJ, Gunnlaugsson T, Lopinski S, Lowe M, Parker D, Peacock RD, Perry JJ, Aime S, Botta M (2000) J Am Chem Soc 122:9674-9684
24. Caravan P, Ellison JJ, McMurry TJ, Lauffer RB (1999) Chem Rev 99:2293-2351
25. Bertini I, Luchinat C (1996) NMR of paramagnetic substances. Coord Chem Rev 150:1-296
26. Svensson LA, Thulin E, Forsén S (1992) J Mol Biol 223:601-606
27. Szebenyi DME, Moffat KJ (1986) J Biol Chem 261:8761-8777
28. Anderson M, Malmendal A, Linse S, Ivarson I, Forsén S, Svensson LA (1997) Protein Sci 6:1139-1147
29. Kordel J, Skelton NJ, Chazin WJ (1993) J Mol Biol 231:711-734
30. Allegrozzi M, Bertini I, Janik MBL, Lee Y-M, Liu G, Luchinat C (2000) J Am Chem Soc 122:4154-4161
31. Brodin P, Grundstrom T, Hofmann T, Drakenberg T, Thulin E, Forsén S (1986) Biochemistry 25:5371-5377
32. Johansson C, Brodin P, Grundstrom T, Thulin E, Forsén S, Drakenberg T (1990) Eur J Biochem 187:455-460
33. Malmendal A, Carlström G, Hambraeus C, Drakenberg T, Forsén S, Akke M (1998) Biochemistry 37:2586-2595
34. Chazin WJ, Kördel J, Drakenberg T, Thulin E, Brodin P, Grundstrom T, Forsén S (1989) Proc Natl Acad Sci USA 86:2195-2198
35. Bodenhausen G, Ruben DJ (1980) Chem Phys Lett 69:185-188
36. Kay LE, Keifer P, Saarinen T (1992) J Am Chem Soc 114:10663-10665
37. Palmer AG III, Cavanagh J, Wright PE, Rance M (1991) J Magn Reson 93:151-170
38. Cavanagh J, Palmer AG III, Wright PE, Rance M (1991) J Magn Reson 91:429-436
39. Vold RL, Waugh JS, Klein MP, Phelps DE (1968) J Chem Phys 48:3831-3832
40. Press WH, Flannery BP, Teukolsky SA, Vetterling WT (1988) Numerical recipes in C: the art of scientific computing. Cambridge University Press, New York
41. Banci L, Bertini I, Cremonini MA, Gori Savellini G, Luchinat C, Wüthrich K, Güntert P (1998) J Biomol NMR 12:553-557
42. Güntert P, Mumenthaler C, Wüthrich K (1997) J Mol Biol 273:283-298
43. Eaton DR, Fischer RD, Hawkins CJ, Horrocks WD Jr, Jesson JP, Kreilick RW, Kurland RJ, La Mar GN, Langford CH, Phillips WD, Pignolet LH, Rettig MF, Swift TJ (1973) NMR of paramagnetic molecules. Academic Press, New York
44. Bertini I, Luchinat C (1986) NMR of paramagnetic molecules in biological systems. Benjamin/Cummings, Menlo Park, Calif
45. Bloembergen N, Morgan LO (1961) J Chem Phys 34:842-850
46. Rubinstein M, Baram A, Luz Z (1971) Mol Phys 20:67-80
47. Bertini I, Lee Y-M, Luchinat C, Piccioli M, Poggi L (2001) ChemBioChem 2:550-558
48. Aime S, Botta M, Bruce JI, Maniero V, Parker D, Terreno E (2001) Chem Commun 115-116