Chemical kinetic analysis of thermal decay of rhodopsin reveals unusual energetics of thermal isomerization and hydrolysis of Schiff base

Journal of Biological Chemistry

Volumn 286, Issue 44, 2011, Pages 38408-38416

  Liu, Jian ^a   Liu, Monica Yun ^a   Fu, Li ^a   Zhu, Gefei Alex ^a   Yan, Elsa C Y ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DARK STATE; DEUTERIUM ISOTOPE EFFECT; ENERGETIC PROPERTIES; HYDROGEN BONDING NETWORK; KINETIC DATA; KINETIC MODELS; PHOTO-ACTIVATED; SCHIFF-BASE; TEMPERATURE DEPENDENCE; THERMAL DECAYS; THERMAL ISOMERIZATIONS; THERMAL PROCESS; VISUAL PIGMENTS;

CHEMICAL ANALYSIS; DEUTERIUM; EXPERIMENTS; FUNCTIONAL GROUPS; HYDROLYSIS; ISOMERS; KINETIC THEORY; KINETICS; OPHTHALMOLOGY; RATE CONSTANTS; THERMODYNAMIC PROPERTIES;

ISOMERIZATION;

11 CIS RETINAL; DEUTERIUM OXIDE; MUTANT PROTEIN; OPSIN; RHODOPSIN; SCHIFF BASE; WATER;

ANALYTICAL PARAMETERS; ARTICLE; CATALYSIS; CHEMICAL ANALYSIS; CHEMICAL KINETIC ANALYSIS; CONTROLLED STUDY; ENERGY; HUMAN; HUMAN CELL; HYDROGEN BOND; HYDROLYSIS; ISOMERIZATION; KINETICS; PRIORITY JOURNAL; TEMPERATURE; THERMAL DECAY;

ANIMALS; CATTLE; EVOLUTION, MOLECULAR; EYE DISEASES; HEK293 CELLS; HUMANS; HYDROGEN BONDING; HYDROLYSIS; KINETICS; MODELS, THEORETICAL; MUTATION; RETINITIS PIGMENTOSA; RHODOPSIN; SCHIFF BASES; TEMPERATURE;

EID: 80055099919     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.280602     Document Type: Article

References (53)

1. Palczewski, K. (2006) Annu. Rev. Biochem. 75, 743-767
2. Menon, S. T., Han, M., and Sakmar, T. P. (2001) Physiol. Rev. 81, 1659-1688
3. Birge, R. R. (1990) Annu. Rev. Phys. Chem. 41, 683-733
4. Okada, T., Ernst, O. P., Palczewski, K., and Hofmann, K. P. (2001) Trends Biochem. Sci. 26, 318-324
5. Palczewski, K., Kumasaka, T., Hori, T., Behnke, C. A., Motoshima, H., Fox, B. A., Le Trong, I., Teller, D. C., Okada, T., Stenkamp, R. E., Yamamoto, M., and Miyano, M. (2000) Science 289, 739-745
6. Okada, T., Sugihara, M., Bondar, A. N., Elstner, M., Entel, P., and Buss, V. (2004) J. Mol. Biol. 342, 571-583
7. Li, J., Edwards, P. C., Burghammer, M., Villa, C., and Schertler, G. F. X. (2004) J. Mol. Biol. 343, 1409-1438
8. Altenbach, C., Kusnetzow, A. K., Ernst, O. P., Hofmann, K. P., and Hubbell, W. L. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 7439-7444
9. Choe, H. W., Kim, Y. J., Park, J. H., Morizumi, T., Pai, E. F., Krauss, N., Hofmann, K. P., Scheerer, P., and Ernst, O. P. (2011) Nature 471, 651-655
10. Baylor, D. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 560-565
11. Baylor, D. A., Lamb, T. D., and Yau, K. W. (1979) J. Physiol.-London 288, 613-634
12. Srebro, R., and Behbehani, M. (1972) J. Physiol.-London 224, 349-361
13. Baylor, D. A., Nunn, B. J., and Schnapf, J. L. (1984) J. Physiol.-London 357, 575-607
14. Lagnado, L., and Baylor, D. (1992) Neuron 8, 995-1002
15. Lamb, T. D. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 566-570
16. Rao, V. R., Cohen, G. B., and Oprian, D. D. (1994) Nature 367, 639-642
17. Hubbard, R. (1958) J. Gen. Physiol. 42, 259-280
18. Del Valle, L. J., Ramon, E., Bosch, L., Manyosa, J., and Garriga, P. (2003) Cell Mol. Life Sci. 60, 2532-2537
19. Janz, J. M., Fay, J. F., and Farrens, D. L. (2003) J. Biol. Chem. 278, 16982-16991
20. Janz, J. M., and Farrens, D. L. (2004) J. Biol. Chem. 279, 55886-55894
21. Lórenz-Fonfría, V. A., Furutani, Y., Ota, T., Ido, K., and Kandori, H. (2010) J. Am. Chem. Soc. 132, 5693-5703
22. Liu, J., Liu, M. Y., Nguyen, J. B., Bhagat, A., Mooney, V., and Yan, E. C. Y. (2009) J. Am. Chem. Soc. 131, 8750-8751
23. Liu, J., Liu, M. Y., Nguyen, J. B., Bhagat, A., Mooney, V., and Yan, E. C. Y. (2011) J. Biol. Chem. 286, 27622-27629
24. Okada, T., Fujiyoshi, Y., Silow, M., Navarro, J., Landau, E. M., and Shichida, Y. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 5982-5987
25. Orban, T., Gupta, S., Palczewski, K., and Chance, M. R. (2010) Biochemistry 49, 827-834
26. Angel, T. E., Chance, M. R., and Palczewski, K. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 8555-8560
27. Angel, T. E., Gupta, S., Jastrzebska, B., Palczewski, K., and Chance, M. R. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 14367-14372
28. Jastrzebska, B., Palczewski, K., and Golczak, M. (2011) J. Biol. Chem. 286, 18930-18937
29. Yan, E. C. Y., Epps, J., Lewis, J. W., Szundi, I., Bhagat, A., Sakmar, T. P., and Kliger, D. S. (2007) J. Phys. Chem. C 111, 8843-8848
30. Tsutsui, K., Imai, H., and Shichida, Y. (2007) Biochemistry 46, 6437-6445
31. Bell, R. P. (1974) Chem. Soc. Rev. 3, 513-544
32. Cooper, A., Dixon, S. F., Nutley, M. A., and Robb, J. L. (1987) J. Am. Chem. Soc. 109, 7254-7263
33. Mahalingam, M., Martínez-Mayorga, K., Brown, M. F., and Vogel, R. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 17795-17800
34. Botelho, A. V., Huber, T., Sakmar, T. P., and Brown, M. F. (2006) Biophys. J. 91, 4464-4477
35. Soubias, O., Teague, W. E., and Gawrisch, K. (2006) J. Biol. Chem. 281, 33233-33241
36. Salem, N., Jr., Litman, B., Kim, H. Y., and Gawrisch, K. (2001) Lipids 36, 945-959
37. Corley, S. C., Sprangers, P., and Albert, A. D. (2011) Biophys. J. 100, 2946-2954
38. Ranaghan, M. J., Shima, S., Ramos, L., Poulin, D. S., Whited, G., Rajasekaran, S., Stuart, J. A., Albert, A. D., and Birge, R. R. (2010) J. Phys. Chem. B 114, 14064-14070
39. Banerjee, S., Huber, T., and Sakmar, T. P. (2008) J. Mol. Biol. 377, 1067-1081
40. Bayburt, T. H., Leitz, A. J., Xie, G., Oprian, D. D., and Sligar, S. G. (2007) J. Biol. Chem. 282, 14875-14881
41. Bayburt, T. H., Vishnivetskiy, S. A., McLean, M. A., Morizumi, T., Huang, C. C., Tesmer, J. J., Ernst, O. P., Sligar, S. G., and Gurevich, V. V. (2011) J. Biol. Chem. 286, 1420-1428
42. Shastry, B. S. (1994) Am. J. Med. Genet. 52, 467-474
43. Berson, E. L. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 4526-4528
44. Kalloniatis, M., and Fletcher, E. L. (2004) Clin. Exp. Optom. 87, 65-80
45. Kennan, A., Aherne, A., and Humphries, P. (2005) Trends Genet. 21, 103-110
46. Hartong, D. T., Berson, E. L., and Dryja, T. P. (2006) Lancet 368, 1795-1809
47. Shintani, K., Shechtman, D. L., and Gurwood, A. S. (2009) Optometry 80, 384-401
48. McAlear, S. D., Kraft, T. W., and Gross, A. K. (2010) in Retinal Degenerative Diseases: Laboratory and Therapeutic Investigations (Anderson, R. E., LaVail, M. M., Hollyfield, J. G., and Mandal, M. N. A., eds.) pp. 263-272, Springer-Verlag, Berlin
49. Rakoczy, E. P., Kiel, C., McKeone, R., Stricher, F., and Serrano, L. (2011) J. Mol. Biol. 405, 584-606
50. Bowmaker, J. K., and Hunt, D. M. (2006) Curr. Biol. 16, R484-R489
51. Bowmaker, J. K. (2008) Vision Res. 48, 2022-2041
52. Yokoyama, S. (2000) Prog. Retin. Eye Res. 19, 385-419
53. Yokoyama, S. (2008) Annu. Rev. Genomics Hum. Genet. 9, 259-282