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Volumn 12, Issue 7, 2011, Pages 621-630

Systematic annotation and bioinformatics analyses of large-scale oryza sativa proteome

Author keywords

2D page; Alignment; Annotation; OsPAD; Pathway; Proteome; Rice

Indexed keywords

GENE PRODUCT; PROTEOME;

EID: 80055073351     PISSN: 13892037     EISSN: 18755550     Source Type: Journal    
DOI: 10.2174/1389203711109070621     Document Type: Article
Times cited : (2)

References (27)
  • 1
    • 33750118411 scopus 로고    scopus 로고
    • Indica rice (Oryza sativa, BR29 and IR64)
    • Datta, K.; Datta, S.K. Indica rice (Oryza sativa, BR29 and IR64). Methods Mol. Biol., 2006. 343, 201-212.
    • (2006) Methods Mol. Biol , vol.343 , pp. 201-212
    • Datta, K.1    Datta, S.K.2
  • 2
    • 70350166691 scopus 로고    scopus 로고
    • Identification of a new rice blast resistance gene, Pid3, by genome wide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudo gene alleles between the two sequenced rice genomes
    • Shang, J.; Tao, Y.; Chen, X.; Zou, Y.; Lei, C.; Wang, J.; Li, X.; Zhao, X.; Zhang, M.; Lu, Z.; Xu, J.; Cheng, Z.; Wan, J.; Zhu, L. Identification of a new rice blast resistance gene, Pid3, by genome wide comparison of paired nucleotide-binding site-leucine-rich repeat genes and their pseudo gene alleles between the two sequenced rice genomes. Genetics, 2009, 182(4), 1303-1311.
    • (2009) Genetics , vol.182 , Issue.4 , pp. 1303-1311
    • Shang, J.1    Tao, Y.2    Chen, X.3    Zou, Y.4    Lei, C.5    Wang, J.6    Li, X.7    Zhao, X.8    Zhang, M.9    Lu, Z.10    Xu, J.11    Cheng, Z.12    Wan, J.13    Zhu, L.14
  • 3
    • 78649449688 scopus 로고    scopus 로고
    • Development of a versatile, target-oriented tiling microarray assay for measuring allele-specific gene expression
    • He, H.; Zhang, H.; Wang, X.; Wu, N.; Yang, X.; Chen, R.; Li, Y.; Deng, X.W.; Li, L. Development of a versatile, target-oriented tiling microarray assay for measuring allele-specific gene expression. Genomics, 2010, 96(5), 308-315.
    • (2010) Genomics , vol.96 , Issue.5 , pp. 308-315
    • He, H.1    Zhang, H.2    Wang, X.3    Wu, N.4    Yang, X.5    Chen, R.6    Li, Y.7    Deng, X.W.8    Li, L.9
  • 4
    • 33644848361 scopus 로고    scopus 로고
    • Rice proteo mics: A cornerstone for cereal food crop proteomes
    • Agrawal, G.K.; Rakwal, R. Rice proteo mics: a cornerstone for cereal food crop proteomes. Mass Spectrom. Rev., 2006, 25(1), 1-53.
    • (2006) Mass Spectrom. Rev , vol.25 , Issue.1 , pp. 1-53
    • Agrawal, G.K.1    Rakwal, R.2
  • 5
    • 61549084035 scopus 로고    scopus 로고
    • Rice proteomics: Ending phase I and the beginning of phase II
    • Agrawal, G.K.; Jwa, N.S.; Rakwal, R. Rice proteomics: ending phase I and the beginning of phase II. Proteomics, 2009, 9(4): 935-963.
    • (2009) Proteomics , vol.9 , Issue.4 , pp. 935-963
    • Agrawal, G.K.1    Jwa, N.S.2    Rakwal, R.3
  • 6
    • 33845567710 scopus 로고    scopus 로고
    • The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome
    • Romero, R.; Espinoza, J.; Gotsch, F.; Kusanovic, J.P.; Friel, L.A.; Erez, O.; Mazaki-Tovi, S.; Than, N.G.; Hassan, S.; Tromp, G. The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome. BJOG, 2006, 113(Suppl 3), 118-135.
    • (2006) BJOG , vol.113 , Issue.SUPPL. 3 , pp. 118-135
    • Romero, R.1    Espinoza, J.2    Gotsch, F.3    Kusanovic, J.P.4    Friel, L.A.5    Erez, O.6    Mazaki-Tovi, S.7    Than, N.G.8    Hassan, S.9    Tromp, G.10
  • 7
    • 65749114284 scopus 로고    scopus 로고
    • Macroautophagy in immunity and tolerance
    • Gannage, M.; Munz C., Macroautophagy in immunity and tolerance. Traffic, 2009, 10(6), 615-620.
    • (2009) Traffic , vol.10 , Issue.6 , pp. 615-620
    • Gannage, M.1    Munz, C.2
  • 8
    • 77957002551 scopus 로고    scopus 로고
    • The significance of proteomics in public health
    • Pando-Robles, R.V.; Lanz-Mendoza, H. The significance of proteomics in public health. Salud Publica Mex., 2009, 51(Suppl 3), S386-394.
    • (2009) Salud Publica Mex , vol.51 , Issue.SUPPL. 3 , pp. 386-394
    • Pando-Robles, R.V.1    Lanz-Mendoza, H.2
  • 9
    • 33746571946 scopus 로고    scopus 로고
    • Two-dimensional difference gel electrophoresis
    • Wu, T.L. Two-dimensional difference gel electrophoresis. Methods Mol. Biol., 2006, 328, 71-95.
    • (2006) Methods Mol. Biol , vol.328 , pp. 71-95
    • Wu, T.L.1
  • 11
    • 0031458894 scopus 로고    scopus 로고
    • HSC-2DPAGE and the two-dimensional gel electrophoresis database of dog heart proteins
    • Dunn, M. J.; Corbett, J. M.; Wheeler, C. H. HSC-2DPAGE and the two-dimensional gel electrophoresis database of dog heart proteins. Electrophoresis, 1997, 18, 2795-2802.
    • (1997) Electrophoresis , vol.18 , pp. 2795-2802
    • Dunn, M.J.1    Corbett, J.M.2    Wheeler, C.H.3
  • 12
    • 0030771120 scopus 로고    scopus 로고
    • Yeast Protein Database (YPD): A database for the complete proteome of Saccharomyces cerevisiae
    • Payne, W. E.; Garrels, J. I. Yeast Protein Database (YPD): a database for the complete proteome of Saccharomyces cerevisiae. Nucleic Acids Res., 1997, 25, 57-62.
    • (1997) Nucleic Acids Res , vol.25 , pp. 57-62
    • Payne, W.E.1    Garrels, J.I.2
  • 13
    • 0032947531 scopus 로고    scopus 로고
    • Mapping and identification of HeLa cell proteins separated by immobilized pH-gradient two-dimensional gel electrophoresis and construction of a two-dimensional polyacrylamide gel electrophoresis database
    • Shaw, A.C., Larsen, M.R., Roepstorff, P., Holm, A., Christiansen, G., Birkelund, S. Mapping and identification of HeLa cell proteins separated by immobilized pH-gradient two-dimensional gel electrophoresis and construction of a two-dimensional polyacrylamide gel electrophoresis database. Electrophoresis, 1999, 20, 977-983.
    • (1999) Electrophoresis , vol.20 , pp. 977-983
    • Shaw, A.C.1    Larsen, M.R.2    Roepstorff, P.3    Holm, A.4    Christiansen, G.5    Birkelund, S.6
  • 15
    • 0347755545 scopus 로고    scopus 로고
    • Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: Its status in 2003
    • Setsuko, K.; Keiichi, K.; Kouji, S.; Kazuo, O.; Kenichi, H. Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003. Nucleic Acids Res., 2004, 32(Database issue), 388-392.
    • (2004) Nucleic Acids Res , vol.32 , Issue.Database issue , pp. 388-392
    • Setsuko, K.1    Keiichi, K.2    Kouji, S.3    Kazuo, O.4    Kenichi, H.5
  • 18
    • 0000627958 scopus 로고
    • The Box-Cox transformation technique: A review
    • Sakia, R.M. The Box-Cox transformation technique: a review. The Statistician, 1992, 41, 169-178.
    • (1992) The Statistician , vol.41 , pp. 169-178
    • Sakia, R.M.1
  • 22
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen, M.B.; Spellman, P.T.; Brown, P.O.; Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 1998, 95(25), 14863-14868.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 24
    • 0036638259 scopus 로고    scopus 로고
    • Quantitative Comparison and Evaluation of Two Commercially Available, Two-dimensional Electrophoresis Image Analysis Software Packages, Z3 and Melanie
    • Raman, B.; Cheung, A.; Marten, M.R. Quantitative Comparison and Evaluation of Two Commercially Available, Two-dimensional Electrophoresis Image Analysis Software Packages, Z3 and Melanie. Electrophoresis, 2002, 23, 2194-2202.
    • (2002) Electrophoresis , vol.23 , pp. 2194-2202
    • Raman, B.1    Cheung, A.2    Marten, M.R.3
  • 25
    • 0345058748 scopus 로고    scopus 로고
    • Rice Proteomics: Current Status and Future Perspectives
    • Rakwal, R.; Agrawal, G.K. Rice Proteomics: Current Status and Future Perspectives. Electmphoresis, 2003, 24, 3378-3389.
    • (2003) Electmphoresis , vol.24 , pp. 3378-3389
    • Rakwal, R.1    Agrawal, G.K.2
  • 26
    • 16344375435 scopus 로고    scopus 로고
    • Rice Proteome Analysis: A Step Toward Functional Analysis of the Rice Genome
    • Komatsu, S.; Tanaka, N. Rice Proteome Analysis: A Step Toward Functional Analysis of the Rice Genome. Proteomics, 2005, 5(4), 938-949.
    • (2005) Proteomics , vol.5 , Issue.4 , pp. 938-949
    • Komatsu, S.1    Tanaka, N.2


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