Complete genome sequence of haloarcula hispanica, a model haloarchaeon for studying genetics, metabolism, and virus-host interaction

Journal of Bacteriology

Volumn 193, Issue 21, 2011, Pages 6086-6087

  Liu, Hailong ^a   Wu, Zhenfang ^a   Li, Ming ^a   Zhang, Fan ^a   Zheng, Huajun ^b   Han, Jing ^a   Liu, Jingfang ^a   Zhou, Jian ^a   Wang, Shengyue ^b   Xiang, Hua ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b CHINESE NATIONAL HUMAN GENOME CENTER AT SHANGHAI   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL CHROMOSOME; BACTERIAL GENETICS; BACTERIAL GENOME; BACTERIAL METABOLISM; BACTERIAL STRAIN; GENE SEQUENCE; HALOARCULA HISPANICA; MOLECULAR MODEL; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; VIRUS CELL INTERACTION;

CHROMOSOMES, ARCHAEAL; DNA, ARCHAEAL; GENOME, ARCHAEAL; HALOARCULA; MOLECULAR SEQUENCE DATA; PLASMIDS; SEQUENCE ANALYSIS, DNA;

ARCHAEA; HALOARCULA HISPANICA; HALOBACTERIA;

EID: 80055040713     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05953-11     Document Type: Note

References (14)

1. Altschul, S. F., et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Cline, S. W., and W. F. Doolittle. 1992. Transformation of members of the genus Haloarcula with shuttle vectors based on Halobacterium halobium and Haloferax volcanii plasmid replicons. J. Bacteriol. 174:1076-1080.
3. Cline, S. W., W. L. Lam, R. L. Charlebois, L. C. Schalkwyk, and W. F. Doolittle. 1989. Transformation methods for halophilic archaebacteria. Can. J. Microbiol. 35:148-152.
4. Delcher, A. L., D. Harmon, S. Kasif, O. White, and S. L. Salzberg. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27:4636-4641.
5. Guo, F. B., H. Y. Ou, and C. T. Zhang. 2003. ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes. Nucleic Acids Res. 31:1780-1789.
6. Han, J., Q. Lu, L. Zhou, H. Liu, and H. Xiang. 2009. Identification of the polyhydroxyalkanoate (PHA)-specific acetoacetyl coenzyme A reductase among multiple FabG paralogs in Haloarcula hispanica and reconstruction of the PHA biosynthetic pathway in Haloferax volcanii. Appl. Environ. Microbiol. 75:6168-6175.
7. Han, J., Q. Lu, L. Zhou, J. Zhou, and H. Xiang. 2007. Molecular characterization of the phaEC Hm genes, required for biosynthesis of poly(3-hydroxybutyrate) in the extremely halophilic Archaeon Haloarcula marismortui. Appl. Environ. Microbiol. 73:6058-6065.
8. Juez, G., F. Rodriguezvalera, A. Ventosa, and D. J. Kushner. 1986. Haloarcula hispanica spec. nov. and Haloferax gibbonsii spec. nov., two new species of extremely halophilic archaebacteria. Syst. Appl. Microb. 8:75-79.
9. Kanehisa, M., S. Goto, S. Kawashima, Y. Okuno, and M. Hattori. 2004. The KEGG resource for deciphering the genome. Nucleic Acids Res. 32:D277-D280.
10. Lagesen, K., et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
11. Liu, H., J. Han, X. Liu, J. Zhou, and H. Xiang. 2011. Development of pyrF-based gene knockout systems for genome-wide manipulation of the archaea Haloferax mediterranei and Haloarcula hispanica. J. Genet. Genomics 38:261-269.
12. Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
13. Porter, K., B. E. Russ, and M. L. Dyall-Smith. 2007. Virus-host interactions in salt lakes. Curr. Opin. Microbiol. 10:418-424.
14. Tettelin, H., D. Radune, S. Kasif, H. Khouri, and S. L. Salzberg. 1999. Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project. Genomics 62:500-507.