Strong ligand-protein interactions revealed by ultrafast infrared spectroscopy of CO in the heme pocket of the oxygen sensor FixL

Journal of the American Chemical Society

Volumn 133, Issue 43, 2011, Pages 17110-17113

  Nuernberger, Patrick ^a,b,c   Lee, Kevin F ^a,b   Bonvalet, Adeline ^a,b   Bouzhir Sima, Latifa ^a,b   Lambry, Jean Christophe ^a,b   Liebl, Ursula ^a,b   Joffre, Manuel ^a,b   Vos, Marten H ^a,b  

^a LABORATOIRE D OPTIQUE ET BIOSCIENCES   (France)

^b INSERM   (France)

^c UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY MEASUREMENTS; CATALYTIC DOMAINS; CONFORMATIONAL CHANGE; DISTAL HISTIDINE; DISTAL POCKET; DYNAMIC BEHAVIORS; DYNAMIC PROPERTY; ENZYMATIC ACTIVITIES; H-BONDED; HEME IRON; HEME POCKETS; HIGH SENSITIVITY; HIGH SPECTRAL RESOLUTION; HISTIDINE SYSTEMS; LIGAND BINDING; LIGAND-PROTEIN INTERACTION; MUTANT PROTEINS; ORDERS OF MAGNITUDE; SENSOR DOMAINS; STRONG INTERACTION; ULTRA-FAST DYNAMICS; ULTRAFAST INFRARED SPECTROSCOPY; VIBRATIONAL RELAXATION; X RAY CRYSTAL STRUCTURES;

AMINO ACIDS; BEHAVIORAL RESEARCH; CATALYST ACTIVITY; CRYSTAL STRUCTURE; HEMOGLOBIN; INFRARED SPECTROSCOPY; LIGANDS; OXYGEN; OXYGEN SENSORS; PHOTOLYSIS; PROTEINS; SENSORS;

PORPHYRINS;

BINDING PROTEIN; GLOBIN; HEME; HISTIDINE; MYOGLOBIN; OXYGEN; PROTEIN FIXL; UNCLASSIFIED DRUG;

ANISOTROPY; ARTICLE; BINDING AFFINITY; CRYSTAL STRUCTURE; HYDROGEN BOND; INFRARED SPECTROSCOPY; MOLECULAR DOCKING; PROTEIN CONFORMATION; PROTEIN INTERACTION; SENSOR;

BACTERIAL PROTEINS; BRADYRHIZOBIUM; CARBON MONOXIDE; CRYSTALLOGRAPHY, X-RAY; GLOBINS; HEME; HEMEPROTEINS; LIGANDS; MODELS, MOLECULAR; OXYGEN; SPECTROPHOTOMETRY, INFRARED; THERMODYNAMICS;

EID: 80055017710     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja204549n     Document Type: Article

References (37)

1. Gilles-Gonzalez, M. A.; Gonzalez, G.; Perutz, M. F.; Kiger, L.; Marden, M. C.; Poyart, C. Biochemistry 1994, 33, 8067
2. Gilles-Gonzalez, M. A.; Ditta, G. S.; Helinski, D. R. Nature 1991, 350, 170
3. Key, J.; Srajer, V.; Pahl, R.; Moffat, K. Biochemistry 2007, 46, 4706
4. Kubarych, K. J.; Joffre, M.; Moore, A.; Belabas, N.; Jonas, D. M. Opt. Lett. 2005, 30, 1228
5. Lee, K. F.; Nuernberger, P.; Bonvalet, A.; Joffre, M. Opt. Express 2009, 17, 18738
6. Nuernberger, P.; Lee, K. F.; Bonvalet, A.; Vos, M. H.; Joffre, M. J. Phys. Chem. Lett. 2010, 1, 2077
7. Lim, M.; Jackson, T. A.; Anfinrud, P. A. Science 1995, 269, 962
8. Lim, M.; Jackson, T. A.; Anfinrud, P. A. J. Chem. Phys. 1995, 102, 4355
9. Lim, M.; Jackson, T. A.; Anfinrud, P. A. Nat. Struct. Biol. 1997, 4, 209
10. Lim, M.; Jackson, T. A.; Anfinrud, P. A. J. Am. Chem. Soc. 2004, 126, 7946
11. Sagnella, D. E.; Straub, J. E.; Jackson, T. A.; Lim, M.; Anfinrud, P. A. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 14324
12. Hiruma, Y.; Kikuchi, A.; Tanaka, A.; Shiro, Y.; Mizutani, Y. Biochemistry 2007, 46, 6086
13. Kruglik, S. G.; Jasaitis, A.; Hola, K.; Yamashita, T.; Liebl, U.; Martin, J.-L.; Vos, M. H. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 7408
14. Kruglik, S. G.; Lambry, J.-C.; Martin, J.-L.; Vos, M. H.; Négrerie, M. J. Raman Spectrosc. 2011, 42, 265
15. Rodgers, K. R.; Lukat-Rodgers, G. S.; Tang, L. J. Am. Chem. Soc. 1999, 121, 11241
16. Jasaitis, A.; Hola, K.; Bouzhir-Sima, L.; Lambry, J.-C.; Balland, V.; Vos, M. H.; Liebl, U. Biochemistry 2006, 45, 6018
17. Liebl, U.; Bouzhir-Sima, L.; Négrerie, M.; Martin, J.-L.; Vos, M. H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 12771
18. Miksovska, J.; Suquet, C.; Satterlee, J. D.; Larsen, R. W. Biochemistry 2005, 44, 10028
19. van Wilderen, L. J. G. W.; Key, J. M.; Van Stokkum, I. H. M.; van Grondelle, R.; Groot, M. L. J. Phys. Chem. B 2009, 113, 3292
20. Lian, T.; Locke, B.; Kholodenko, Y.; Hochstrasser, R. M. J. Phys. Chem. 1994, 98, 11648
21. Kim, J.; Park, J.; Lee, T.; Lim, M. J. Phys. Chem. B 2009, 113, 260
22. Rupenyan, A.; Commandeur, J.; Groot, M. L. Biochemistry 2009, 48, 6104
23. Nienhaus, K.; Olson, J. S.; Franzen, S.; Nienhaus, G. U. J. Am. Chem. Soc. 2005, 127, 40
24. Owrutsky, J. C.; Li, M.; Locke, B.; Hochstrasser, R. M. J. Phys. Chem. 1995, 99, 4842
25. Ventalon, C.; Fraser, J. M.; Vos, M. H.; Alexandrou, A.; Martin, J.-L.; Joffre, M. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 13216
26. Devereux, M.; Meuwly, M. J. Phys. Chem. B 2009, 113, 13061
27. Skinner, J. L.; Park, K. J. Phys. Chem. B 2001, 105, 6716
28. Moore, J. N.; Hansen, P. A.; Hochstrasser, R. M. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 5062
29. Eaton, W. A.; Hofrichter, J. Methods Enzymol. 1981, 76, 175
30. Hao, B.; Isaza, C.; Arndt, J.; Soltis, M.; Chan, M. K. Biochemistry 2002, 41, 12952
31. Key, J.; Moffat, K. Biochemistry 2005, 44, 4627
32. Miyatake, H.; Mukai, M.; Adachi, S.-i.; Nakamura, H.; Tamura, K.; Iizuka, T.; Shiro, Y.; Strange, R. W.; Hasnain, S. S. J. Biol. Chem. 1999, 274, 23176
33. Tomita, T.; Gonzalez, G.; Chang, A. L.; Ikeda-Saito, M.; Gilles-Gonzalez, M. A. Biochemistry 2002, 41, 4819
34. Kachalova, G. S.; Popov, A. N.; Bartunik, H. D. Science 1999, 284, 473
35. Dunham, C. M.; Dioum, E. M.; Tuckerman, J. R.; Gonzalez, G.; Scott, W. G.; Gilles-Gonzalez, M.-A. Biochemistry 2003, 42, 7701
36. Bredenbeck, J.; Helbing, J.; Nienhaus, K.; Nienhaus, G. U.; Hamm, P. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 14243
37. Ishikawa, H.; Kwak, K.; Chung, J. K.; Kim, S.; Fayer, M. D. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 8619