Molecular delimitation of clades within new world species of the "spiny solanums" (Solanum subg. Leptostemonum)

Taxon

Volumn 60, Issue 5, 2011, Pages 1429-1441

  Stern, Stephen ^a   de Fátima Agra, Maria ^b   Bohs, Lynn ^a  

^a UNIVERSITY OF UTAH   (United States)

^b FEDERAL UNIVERSITY OF PARAÍBA   (Brazil)

Author keywords

Granule bound starch synthase (GBSSI); ITS; Leptostemonum; Solanaceae; Solanum; trnT F; Waxy

Indexed keywords

CLADISTICS; CLASSIFICATION; CULTIVATION; ENDEMIC SPECIES; ENZYME ACTIVITY; FUNCTIONAL MORPHOLOGY; MOLECULAR ANALYSIS; POTATO; TAXONOMY;

BRAZIL;

SOLANACEAE; SOLANUM; SOLANUM MELONGENA;

EID: 80054915872     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.1002/tax.605018     Document Type: Article

References (44)

1. Agra, M.F. 1992. A new species of Solanum section Micracantha (Solanaceae) from northeastern Brazil. Novon 2: 179-181.
2. Agra, M.F. 2004. Sinopse taxonômica de Solanum sect. Erythrotrichum (Solanaceae). Pp. 192-211 in: Rangel-Ch., J.O., Aguirre, C.J., Andrade-C., M.G. & Cañas, D.G. (eds.), Memorias Octavo Congresso Latinoamericano e Segundo Colombiano de Botánica. Bogotá: Universidad Nacional de Colombia.
3. Agra, M.F. 2007. Diversity and distribution of Solanum subg. Leptostemonum in Brazil. Acta Hort. 745: 31-42.
4. Agra, M.F. 2008. Four new species of Solanum section Erythrotrichum (Solanaceae) from Brazil and Peru, and a key to the species of the section. Syst. Bot. 33: 556-565.
5. Bohs, L. 2004. A chloroplast DNA phylogeny of Solanum section Lasiocarpa. Syst. Bot. 29: 177-187.
6. Bohs, L. 2005. Major clades in Solanum based on ndhF sequence data. Pp. 27-49 in: Keating, R.C., Hollowell, V.C. & Croat, T.B. (eds.), A festschrift for William G. D'Arcy: The legacy of a taxonomist. St. Louis: Missouri Botanical Garden Press.
7. Bohs, L. & Olmstead, R.G. 2001. A reassessment of Normania and Triguera (Solanaceae). Pl. Syst. Evol. 228: 33-48.
8. Bohs, L., Weese, T., Myers, N., Lefgren, V., Thomas, N., Van Wagenen, A. & Stern, S. 2007. Zygomorphy and heterandry in Solanum in a phylogenetic context. Acta Hort. 745: 201-223.
9. Cummings, M.P., Handley, S.A., Myers, D.S., Reed, D.L., Rokas, A. & Winka, K. 2003. Comparing bootstrap and posterior probability values in the four-taxon case. Syst. Biol. 52: 477-487.
10. D'Arcy, W.G. 1972. Solanaceae studies II: Typification of subdivisions of Solanum. Ann. Missouri Bot. Gard. 59: 262-278.
11. Erixon, P., Svennblad, B., Britton, T. & Oxelman, B. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 52: 665-673.
12. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
13. Frodin, D.G. 2004. History and concepts of big plant genera. Taxon 53: 753-776.
14. Goloboff, P., Farris, J. & Nixon, K. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.
15. Huelsenbeck, J.P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
16. Hunziker, A.T. 1979. Estudios sobre Solanaceae. IX. Solanum mortonii, especie nueva del noroeste de Argentina. Kurtziana 12-13: 133-138.
17. Knapp, S. 2002. Tobacco to tomatoes: A phylogenetic perspective on fruit diversity in the Solanaceae. J. Exp. Bot. 53: 2001-2022.
18. Knapp, S., Bohs, L., Nee, M. & Spooner, D.M. 2004. Solanaceae -A model for linking genomics with biodiversity. Comp. Funct. Genomics 5: 285-291.
19. Lester, R.N. & Symon, D.E. 1989. A Mexican Solanum with splash-cup or censer fruits. Solanaceae Newsl. 3(1): 72-73.
20. Levin, R.A., Myers, N.R. & Bohs, L. 2006. Phylogenetic relationships among the "spiny solanums" (Solanum subgenus Leptostemonum, Solanaceae). Amer. J. Bot. 93: 157-169.
21. Levin, R.A., Watson, K. & Bohs, L. 2005. A four-gene study of evolutionary relationships in Solanum section Acanthophora. Amer. J. Bot. 92: 603-612.
22. Martine, C.T., Anderson, G.J. & Les, D.H. 2009. Gender-bending aubergines: Molecular phylogenetics of cryptically dioecious Solanum in Australia. Austral. Syst. Bot. 22: 107-120.
23. Martine, C.T., Vanderpool, D., Anderson, G.J. & Les, D.H. 2006. Phylogenetic relationships of andromonoecious and dioecious Australian species of Solanum subgenus Leptostemonum section Melongena: Inferences from ITS sequence data. Syst. Bot. 31: 410-420.
24. Mentz, L.A. & Oliveira, P.L. 2004. Solanum (Solanaceae) na região sul do Brasil. Pesq. Bot. 54: 1-327.
25. Miller, J.S., Kamath, A. & Levin, R.A. 2009. Do multiple tortoisesequal a hare? The utility of nine noncoding plastid regions for species-level phylogenetics in tribe Lycieae (Solananceae). Syst. Bot. 34: 796-804.
26. Nee, M. 1979. A revision of Solanum section Acanthophora. Ph.D. dissertation, University of Wisconsin, Madison, Wisconsin, U.S.A.
27. Nee, M. 1999. Synopsis of Solanum in the New World. Pp. 285-333 in: Nee M., Symon D.E., Lester R.N. & Jesops J.P. (eds.), Solanaceae IV: Advances in biology and utilization. Kew: Royal Botanic Gardens.
28. Nee, M., Knapp, S. & Bohs, L. 2006. New species of Solanum and Capsicum (Solanaceae) from Bolivia, with clarification of nomenclature in some Bolivian Solanum. Brittonia 58: 322-356.
29. Posada, D. & Crandall, K.A. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14: 817-818.
30. Rambaut, A. 1996. Se-Al: Sequence alignment editor. http://evolve.zoo.ox.ac.uk/. Department of Zoology, University of Oxford, Oxford, U. K.
31. Rodríguez, F., Wu, F., Ané, C., Tanksley, S. & Spooner, D.M. 2009. Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history? B.M.C. Evol. Biol. 9: 191. DOI: 10.1186/1471-2148-9-191.
32. Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III. Amer. J. Bot. 94: 275-288.
33. Simmons, M.P., Pickett, K.M. & Miya, M. 2004. How meaningful are Bayesian support values? Molec. Biol. Evol. 21: 188-199.
34. Stern, S., Weese, T. & Bohs, L. 2010. A three-gene phylogeny of Solanum section Androceras. Syst. Bot. 33: 885-893.
35. Strickland-Constable, R., Schneider, H., Ansell, S.W., Russell, S.J. & Knapp, S. 2010. Species identity in the Solanum bahamense species group (Solanaceae, Solanum subgenus Leptostemonum). Taxon 59: 209-226.
36. Swofford, D.L. 2002. PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4.0b10. Sunderland, Massachusetts: Sinauer.
37. Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Molec. Biol. 17: 1105-1110.
38. Weese, T.L. & Bohs, L. 2007. A three-gene phylogeny of the genus Solanum (Solanaceae). Syst. Bot. 32: 445-463.
39. Weese, T.L. & Bohs, L. 2010. Eggplant origins: Out of Africa, into the Orient. Taxon 59: 49-56.
40. Whalen, M.D. 1984. Conspectus of species groups in Solanum subgenus Leptostemonum. Gentes Herb. 12: 179-282.
41. Whalen, M.D., Costich, D.E. & Heiser, C.B. 1981. Taxonomy of Solanum section Lasiocarpa. Gentes Herb. 12: 41-129.
42. White, T.J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in: Innis, M., Gelfand, D., Sninsky, J. & White, T. (eds.), PCR protocols: A guide to methods and applications. San Diego: Academic Press.
43. Wiens, J.J. 1998. Combining data sets with different phylogenetic histories. Syst. Biol. 47: 568-581.
44. Wu, F., Mueller, L.A., Crouzillat, D., Pétiard, V. & Tanksley, S.D. 2006. Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: A test case in the Euasteridaplant clade. Genetics 174: 1407-1420.