-
1
-
-
14844360667
-
V3: HIV's switch-hitter
-
DOI 10.1089/aid.2005.21.171
-
Hartley, O.; Klasse, P. J.; Sattentau, Q. J.; Moore, J. P. V3: HIV's switch-hitter AIDS Res. Hum. Retroviruses 2005, 21 (2) 171-89 (Pubitemid 40354360)
-
(2005)
AIDS Research and Human Retroviruses
, vol.21
, Issue.2
, pp. 171-189
-
-
Hartley, O.1
Klasse, P.J.2
Sattentau, Q.J.3
Moore, J.P.4
-
2
-
-
26844437646
-
HIV-1 gp120 V3 loop for structure-based drug design
-
DOI 10.2174/138920305774329359
-
Sirois, S.; Sing, T.; Chou, K. C. HIV-1 gp120 V3 loop for structure-based drug design Curr. Protein Pept. Sci. 2005, 6 (5) 413-22 (Pubitemid 41448343)
-
(2005)
Current Protein and Peptide Science
, vol.6
, Issue.5
, pp. 413-422
-
-
Sirois, S.1
Sing, T.2
Chou, K.-C.3
-
3
-
-
0025071687
-
Conserved sequence and structural elements in the HIV-1 principal neutralizing determinant
-
LaRosa, G. J.; Davide, J. P.; Weinhold, K.; Waterbury, J. A.; Profy, A. T.; Lewis, J. A.; Langlois, A. J.; Dreesman, G. R.; Boswell, R. N.; Shadduck, P. Conserved sequence and structural elements in the HIV-1 principal neutralizing determinant Science 1990, 249 (4971) 932-5
-
(1990)
Science
, vol.249
, Issue.4971
, pp. 932-935
-
-
Larosa, G.J.1
Davide, J.P.2
Weinhold, K.3
Waterbury, J.A.4
Profy, A.T.5
Lewis, J.A.6
Langlois, A.J.7
Dreesman, G.R.8
Boswell, R.N.9
Shadduck, P.10
-
4
-
-
52649116262
-
Determining the invariant structure elements of the HIV-1 variable V3 loops: Insight into the HIV-MN and HIV-Haiti isolates
-
Andrianov, A. M. Determining the invariant structure elements of the HIV-1 variable V3 loops: insight into the HIV-MN and HIV-Haiti isolates J. Biomol. Struct. Dyn. 2008, 26 (2) 247-54
-
(2008)
J. Biomol. Struct. Dyn.
, vol.26
, Issue.2
, pp. 247-254
-
-
Andrianov, A.M.1
-
5
-
-
33747682832
-
Determination of structurally conservative amino acids of the HIV-1 protein gp120 V3 loop as promising targets for drug design by protein engineering approaches
-
DOI 10.1134/S000629790608013X
-
Andrianov, A. M.; Veresov, V. G. Determination of structurally conservative amino acids of the HIV-1 protein gp120 V3 loop as promising targets for drug design by protein engineering approaches Biochemistry (Moscow) 2006, 71 (8) 906-14 (Pubitemid 44273669)
-
(2006)
Biochemistry (Moscow)
, vol.71
, Issue.8
, pp. 906-914
-
-
Andrianov, A.M.1
Veresov, V.G.2
-
6
-
-
34250740369
-
Structural analysis of the HIV-1 gp120 V3 loop: Application to the HIV-Haiti isolates
-
Andrianov, A. M.; Veresov, V. G. Structural analysis of the HIV-1 gp120 V3 loop: application to the HIV-Haiti isolates J. Biomol. Struct. Dyn. 2007, 24 (6) 597-608 (Pubitemid 46954294)
-
(2007)
Journal of Biomolecular Structure and Dynamics
, vol.24
, Issue.6
, pp. 597-608
-
-
Andrianov, A.M.1
Veresov, V.G.2
-
7
-
-
52649179214
-
Study on conformational homology of the HIV-1 gp120 protein V3 loop. Structural analysis of the HIV-RF and HIV-Thailand viral strains
-
Andrianov, A. M. Study on conformational homology of the HIV-1 gp120 protein V3 loop. Structural analysis of the HIV-RF and HIV-Thailand viral strains Biochemistry (Moscow) Suppl. Ser. B: Biomed. Chem. 2007, 1, 125-30
-
(2007)
Biochemistry (Moscow) Suppl. Ser. B: Biomed. Chem.
, vol.1
, pp. 125-130
-
-
Andrianov, A.M.1
-
8
-
-
27744597054
-
Structural biology: Structure of a V3-containing HIV-1 gp120 core
-
DOI 10.1126/science.1118398
-
Huang, C. C.; Tang, M.; Zhang, M. Y.; Majeed, S.; Montabana, E.; Stanfield, R. L.; Dimitrov, D. S.; Korber, B.; Sodroski, J.; Wilson, I. A.; Wyatt, R.; Kwong, P. D. Structure of a V3-containing HIV-1 gp120 core Science 2005, 310 (5750) 1025-8 (Pubitemid 41611916)
-
(2005)
Science
, vol.310
, Issue.5750
, pp. 1025-1028
-
-
Huang, C.-C.1
Tang, M.2
Zhang, M.-Y.3
Majeed, S.4
Montabana, E.5
Stanfield, R.L.6
Dimitrov, D.S.7
Korber, B.8
Sodroski, J.9
Wilson, I.A.10
Wyatt, R.11
Kwong, P.D.12
-
9
-
-
0003507758
-
Human Retroviruses and AIDS 1999
-
In; Los Alamos National Laboratory: Los Alamos, NM
-
Kuiken, C. L.; Foley, B.; Hahn, B.; Marx, P. A.; McCutchan, F.; Mellors, J. W.; Mullins, J. I.; Wolinsky, S.; Korber, B., Human Retroviruses and AIDS 1999. In A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences; Los Alamos National Laboratory: Los Alamos, NM, 1999; p 789.
-
(1999)
A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences
, pp. 789
-
-
Kuiken, C.L.1
Foley, B.2
Hahn, B.3
Marx, P.A.4
McCutchan, F.5
Mellors, J.W.6
Mullins, J.I.7
Wolinsky, S.8
Korber, B.9
-
10
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
DOI 10.1006/jmbi.1993.1626
-
Sali, A.; Blundell, T. L. Comparative Protein Modelling by Satisfaction of Spatial Restraints J. Mol. Biol. 1993, 234 (3) 779-815 (Pubitemid 24007801)
-
(1993)
Journal of Molecular Biology
, vol.234
, Issue.3
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
11
-
-
0025292252
-
Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells
-
Leonard, C. K.; Spellman, M. W.; Riddle, L.; Harris, R. J.; Thomas, J. N.; Gregory, T. J. Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells J. Biol. Chem. 1990, 265 (18) 10373-82
-
(1990)
J. Biol. Chem.
, vol.265
, Issue.18
, pp. 10373-10382
-
-
Leonard, C.K.1
Spellman, M.W.2
Riddle, L.3
Harris, R.J.4
Thomas, J.N.5
Gregory, T.J.6
-
12
-
-
0025739156
-
Simulated annealing approach to the study of protein structures
-
Chou, K. C.; Carlacci, L. Simulated annealing approach to the study of protein structures Protein Eng. 1991, 4 (6) 661-7
-
(1991)
Protein Eng.
, vol.4
, Issue.6
, pp. 661-667
-
-
Chou, K.C.1
Carlacci, L.2
-
13
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
-
Oostenbrink, C.; Villa, A.; Mark, A. E.; van Gunsteren, W. F. A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6 J. Comput. Chem. 2004, 25 (13) 1656-76
-
(2004)
J. Comput. Chem.
, vol.25
, Issue.13
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
14
-
-
0029633168
-
GROMACS: A message-passing parallel molecular dynamics implementation
-
Berendsen, H. J. C.; van der Spoel, D.; van Drunen, R. GROMACS: A message-passing parallel molecular dynamics implementation Comput. Phys. Commun. 1995, 91 (1-3) 43-56
-
(1995)
Comput. Phys. Commun.
, vol.91
, Issue.1-3
, pp. 43-56
-
-
Berendsen, H.J.C.1
Van Der Spoel, D.2
Van Drunen, R.3
-
15
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; Thornton, J. M. PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 1993, 26 (2) 283-91
-
(1993)
J. Appl. Crystallogr.
, vol.26
, Issue.2
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
16
-
-
0029978353
-
Analysis of main chain torsion angles in proteins: Prediction of NMR coupling constants for native and random coil conformations
-
DOI 10.1006/jmbi.1996.0041
-
Smith, L. J.; Bolin, K. A.; Schwalbe, H.; MacArthur, M. W.; Thornton, J. M.; Dobson, C. M. Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations J. Mol. Biol. 1996, 255 (3) 494-506 (Pubitemid 26105572)
-
(1996)
Journal of Molecular Biology
, vol.255
, Issue.3
, pp. 494-506
-
-
Smith, L.J.1
Bolin, K.A.2
Schwalbe, H.3
MacArthur, M.W.4
Thornton, J.M.5
Dobson, C.M.6
-
17
-
-
0030039296
-
PROMOTIF - A program to identify and analyze structural motifs in proteins
-
Hutchinson, E. G.; Thornton, J. M. PROMOTIF-a program to identify and analyze structural motifs in proteins Protein Sci. 1996, 5 (2) 212-20 (Pubitemid 26054277)
-
(1996)
Protein Science
, vol.5
, Issue.2
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
18
-
-
0027349406
-
Derivation of locally accurate spatial protein structure from NMR data
-
Sherman, S. A.; Johnson, M. E. Derivation of locally accurate spatial protein structure from NMR data Prog. Biophys. Mol. Biol. 1993, 59 (3) 285-339
-
(1993)
Prog. Biophys. Mol. Biol.
, vol.59
, Issue.3
, pp. 285-339
-
-
Sherman, S.A.1
Johnson, M.E.2
-
19
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
In; Pullman, B. Reidel: Dordrecht, Vol.
-
Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Hermans, J., Interaction models for water in relation to protein hydration. In Intermolecular Forces; Pullman, B., Ed.; Reidel: Dordrecht, 1981; Vol. 11, pp 331-42.
-
(1981)
Intermolecular Forces
, vol.11
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
20
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C.; Postma, J. P. M.; Gunsteren, W. F. v.; DiNola, A.; Haak, J. R. Molecular dynamics with coupling to an external bath J. Chem. Phys. 1984, 81 (8) 3684-90
-
(1984)
J. Chem. Phys.
, vol.81
, Issue.8
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Gunsteren, F.V.W.3
Dinola, A.4
Haak, J.R.5
-
21
-
-
67650410955
-
-
UIIP NAS of Belarus: Minsk.
-
Ablameyko, S. V.; Abramov, S. M.; Anishchanka, U. V.; Medvedev, S. V.; Paramonov, N. N.; Tchij, O. P. SKIF supercomputer configurations; UIIP NAS of Belarus: Minsk, 2005.
-
(2005)
SKIF Supercomputer Configurations
-
-
Ablameyko, S.V.1
Abramov, S.M.2
Anishchanka, U.V.3
Medvedev, S.V.4
Paramonov, N.N.5
Tchij, O.P.6
-
22
-
-
0027160197
-
Backbone-dependent rotamer library for proteins. Application to side-chain prediction
-
DOI 10.1006/jmbi.1993.1170
-
Dunbrack, R. L., Jr.; Karplus, M. Backbone-dependent rotamer library for proteins. Application to side-chain prediction J. Mol. Biol. 1993, 230 (2) 543-74 (Pubitemid 23161363)
-
(1993)
Journal of Molecular Biology
, vol.230
, Issue.2
, pp. 543-574
-
-
Dunbrack Jr., R.L.1
Karplus, M.2
-
23
-
-
28244483280
-
A highly conserved arginine in gp120 governs HIV-1 binding to both syndecans and CCR5 via sulfated motifs
-
DOI 10.1074/jbc.M504233200
-
de Parseval, A.; Bobardt, M. D.; Chatterji, A.; Chatterji, U.; Elder, J. H.; David, G.; Zolla-Pazner, S.; Farzan, M.; Lee, T. H.; Gallay, P. A. A highly conserved arginine in gp120 governs HIV-1 binding to both syndecans and CCR5 via sulfated motifs J. Biol. Chem. 2005, 280 (47) 39493-504 (Pubitemid 41713907)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.47
, pp. 39493-39504
-
-
De Parseval, A.1
Bobardt, M.D.2
Chatterji, A.3
Chatterji, U.4
Elder, J.H.5
David, G.6
Zolla-Pazner, S.7
Farzan, M.8
Lee, T.-H.9
Gallay, P.A.10
-
24
-
-
0032510757
-
CCR5 coreceptor utilization involves a highly conserved arginine residue of HIV type 1 gp120
-
DOI 10.1073/pnas.95.10.5740
-
Wang, W. K.; Dudek, T.; Zhao, Y. J.; Brumblay, H. G.; Essex, M.; Lee, T. H. CCR5 coreceptor utilization involves a highly conserved arginine residue of HIV type 1 gp120 Proc. Natl. Acad. Sci. U. S. A. 1998, 95 (10) 5740-5 (Pubitemid 28224166)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.10
, pp. 5740-5745
-
-
Wang, W.-K.1
Dudek, T.2
Zhao, Y.-J.3
Brumblay, H.G.4
Essex, M.5
Lee, T.-H.6
-
25
-
-
0034974149
-
N-linked glycosylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH12 gp120 affect coreceptor usage and cellular tropism
-
DOI 10.1128/JVI.75.13.5998-6006.2001
-
Ogert, R. A.; Lee, M. K.; Ross, W.; Buckler-White, A.; Martin, M. A.; Cho, M. W. N-linked glycosylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH12 gp120 affect coreceptor usage and cellular tropism J. Virol. 2001, 75 (13) 5998-6006 (Pubitemid 32553130)
-
(2001)
Journal of Virology
, vol.75
, Issue.13
, pp. 5998-6006
-
-
Ogert, R.A.1
Lee, M.K.2
Ross, W.3
Buckler-White, A.4
Martin, M.A.5
Cho, M.W.6
-
26
-
-
1842562419
-
N-Linked Glycosylation of the V3 Loop and the Immunologically Silent Face of gp120 Protects Human Immunodeficiency Virus Type 1 SF162 from Neutralization by Anti-gp120 and Anti-gp41 Antibodies
-
DOI 10.1128/JVI.78.7.3279-3295.2004
-
McCaffrey, R. A.; Saunders, C.; Hensel, M.; Stamatatos, L. N-linked glycosylation of the V3 loop and the immunologically silent face of gp120 protects human immunodeficiency virus type 1 SF162 from neutralization by anti-gp120 and anti-gp41 antibodies J. Virol. 2004, 78 (7) 3279-95 (Pubitemid 38568268)
-
(2004)
Journal of Virology
, vol.78
, Issue.7
, pp. 3279-3295
-
-
McCaffrey, R.A.1
Saunders, C.2
Hensel, M.3
Stamatatos, L.4
-
27
-
-
23344435219
-
N-linked glycosylation in C2 region of HIV-1 envelope reduces sensitivity to neutralizing antibodies
-
DOI 10.1089/vim.2005.18.343
-
Teeraputon, S.; Louisirirojchanakul, S.; Auewarakul, P. N-linked glycosylation in C2 region of HIV-1 envelope reduces sensitivity to neutralizing antibodies Viral Immunol. 2005, 18 (2) 343-53 (Pubitemid 41106013)
-
(2005)
Viral Immunology
, vol.18
, Issue.2
, pp. 343-353
-
-
Teeraputon, S.1
Louisirirojchanakul, S.2
Auewarakul, P.3
-
28
-
-
0035199412
-
N-linked glycosylation in the V3 region of HIV type 1 surface antigen modulates coreceptor usage in viral infection
-
DOI 10.1089/08892220152644179
-
Li, Y.; Rey-Cuille, M. A.; Hu, S. L. N-linked glycosylation in the V3 region of HIV type 1 surface antigen modulates coreceptor usage in viral infection AIDS Res. Hum. Retroviruses 2001, 17 (16) 1473-9 (Pubitemid 33116750)
-
(2001)
AIDS Research and Human Retroviruses
, vol.17
, Issue.16
, pp. 1473-1479
-
-
Li, Y.1
Rey-Cuille, M.-A.2
Hu, S.-L.3
-
29
-
-
0034469170
-
The N-terminal V3 loop glycan modulates the interaction of clade A and B human immunodeficiency virus type 1 envelopes with CD4 and chemokine receptors
-
DOI 10.1128/JVI.74.23.11008-11016.2000
-
Malenbaum, S. E.; Yang, D.; Cavacini, L.; Posner, M.; Robinson, J.; Cheng-Mayer, C. The N-terminal V3 loop glycan modulates the interaction of clade A and B human immunodeficiency virus type 1 envelopes with CD4 and chemokine receptors J. Virol. 2000, 74 (23) 11008-16 (Pubitemid 32223966)
-
(2000)
Journal of Virology
, vol.74
, Issue.23
, pp. 11008-11016
-
-
Malenbaum, S.E.1
Yang, D.2
Cavacini, L.3
Posner, M.4
Robinson, J.5
Cheng-Mayer, C.6
-
30
-
-
0035918220
-
N-linked glycosylation of the HIV type-1 gp120 envelope glycoprotein as a major determinant of CCR5 and CXCR4 coreceptor utilization
-
Pollakis, G.; Kang, S.; Kliphuis, A.; Chalaby, M. I.; Goudsmit, J.; Paxton, W. A. N-linked glycosylation of the HIV type-1 gp120 envelope glycoprotein as a major determinant of CCR5 and CXCR4 coreceptor utilization J. Biol. Chem. 2001, 276 (16) 13433-41
-
(2001)
J. Biol. Chem.
, vol.276
, Issue.16
, pp. 13433-13441
-
-
Pollakis, G.1
Kang, S.2
Kliphuis, A.3
Chalaby, M.I.4
Goudsmit, J.5
Paxton, W.A.6
-
31
-
-
0035098352
-
Loss of N-linked glycans in the V3-loop region of gp120 is correlated to an enhanced infectivity of HIV-1
-
Polzer, S.; Dittmar, M. T.; Schmitz, H.; Meyer, B.; Muller, H.; Krausslich, H. G.; Schreiber, M. Loss of N-linked glycans in the V3-loop region of gp120 is correlated to an enhanced infectivity of HIV-1 Glycobiology 2001, 11 (1) 11-9 (Pubitemid 32201333)
-
(2001)
Glycobiology
, vol.11
, Issue.1
, pp. 11-19
-
-
Polzer, S.1
Dittmar, M.T.2
Schmitz, H.3
Meyer, B.4
Muller, H.5
Krausslich, H.-G.6
Schreiber, M.7
-
32
-
-
37549057278
-
Glycosylation of HIV-1 gp120 V3 loop: Towards the rational design of a synthetic carbohydrate vaccine
-
Sirois, S.; Touaibia, M.; Chou, K. C.; Roy, R. Glycosylation of HIV-1 gp120 V3 loop: towards the rational design of a synthetic carbohydrate vaccine Curr. Med. Chem. 2007, 14 (30) 3232-42
-
(2007)
Curr. Med. Chem.
, vol.14
, Issue.30
, pp. 3232-3242
-
-
Sirois, S.1
Touaibia, M.2
Chou, K.C.3
Roy, R.4
-
33
-
-
0036333648
-
The crown and stem of the V3 loop play distinct roles in human immunodeficiency virus type 1 envelope glycoprotein interactions with the CCR5 coreceptor
-
DOI 10.1128/JVI.76.17.8953-8957.2002
-
Cormier, E. G.; Dragic, T. The crown and stem of the V3 loop play distinct roles in human immunodeficiency virus type 1 envelope glycoprotein interactions with the CCR5 coreceptor J. Virol. 2002, 76 (17) 8953-7 (Pubitemid 34864089)
-
(2002)
Journal of Virology
, vol.76
, Issue.17
, pp. 8953-8957
-
-
Cormier, E.G.1
Dragic, T.2
-
34
-
-
0028327101
-
Crystal structure of the principal neutralization site of HIV-1
-
Ghiara, J. B.; Stura, E. A.; Stanfield, R. L.; Profy, A. T.; Wilson, I. A. Crystal structure of the principal neutralization site of HIV-1 Science 1994, 264 (5155) 82-5 (Pubitemid 24146010)
-
(1994)
Science
, vol.264
, Issue.5155
, pp. 82-85
-
-
Ghiara, J.B.1
Stura, E.A.2
Stanfield, R.L.3
Profy, A.T.4
Wilson, I.A.5
-
35
-
-
0036771699
-
Sequence variation and consensus sequence of V3 loop on HIV-1 gp120
-
DOI 10.1016/S0165-2478(02)00101-3, PII S0165247802001013
-
Tian, H.; Lan, C.; Chen, Y. H. Sequence variation and consensus sequence of V3 loop on HIV-1 gp120 Immunol. Lett. 2002, 83 (3) 231-3 (Pubitemid 34722356)
-
(2002)
Immunology Letters
, vol.83
, Issue.3
, pp. 231-233
-
-
Tian, H.1
Lan, C.2
Chen, Y.-H.3
-
36
-
-
4444345855
-
Dual spatial folds and different local structures of the HIV-1 immunogenic crown in various virus isolates
-
Andrianov, A. M. Dual spatial folds and different local structures of the HIV-1 immunogenic crown in various virus isolates J. Biomol. Struct. Dyn. 2004, 22 (2) 159-70 (Pubitemid 39187032)
-
(2004)
Journal of Biomolecular Structure and Dynamics
, vol.22
, Issue.2
, pp. 159-170
-
-
Andrianov, A.M.1
-
37
-
-
0037322432
-
Structure and polymorphism of the principal neutralization site of Thailand HIV-1 isolate
-
Andrianov, A. M.; Sokolov, Y. A. Structure and polymorphism of the principal neutralization site of Thailand HIV-1 isolate J. Biomol. Struct. Dyn. 2003, 20 (4) 603-13 (Pubitemid 36206104)
-
(2003)
Journal of Biomolecular Structure and Dynamics
, vol.20
, Issue.4
, pp. 603-613
-
-
Andrianov, A.M.1
Sokolov, Y.A.2
-
38
-
-
1642474410
-
3D Structure Model of the Principal Neutralizing Epitope of Minnesota HIV-1 Isolate
-
Andrianov, A. M.; Sokolov, Y. A. 3D structure model of the principal neutralizing epitope of Minnesota HIV-1 isolate J. Biomol. Struct. Dyn. 2004, 21 (4) 577-90 (Pubitemid 38120958)
-
(2004)
Journal of Biomolecular Structure and Dynamics
, vol.21
, Issue.4
, pp. 577-590
-
-
Andrianov, A.M.1
Sokolov, Y.A.2
-
39
-
-
0025864617
-
Alteration of HIV-1 infectivity and neutralization by a single amino acid replacement in the V3 loop domain
-
Ivanoff, L. A.; Looney, D. J.; McDanal, C.; Morris, J. F.; Wong-Staal, F.; Langlois, A. J.; Petteway, S. R., Jr.; Matthews, T. J. Alteration of HIV-1 infectivity and neutralization by a single amino acid replacement in the V3 loop domain AIDS Res. Hum. Retroviruses 1991, 7 (7) 595-603
-
(1991)
AIDS Res. Hum. Retroviruses
, vol.7
, Issue.7
, pp. 595-603
-
-
Ivanoff, L.A.1
Looney, D.J.2
McDanal, C.3
Morris, J.F.4
Wong-Staal, F.5
Langlois, A.J.6
Petteway Jr., S.R.7
Matthews, T.J.8
-
40
-
-
0033744696
-
A single point mutation in HIV-1 V3 loop alters the immunogenic properties of rgp120
-
Lee, S. K.; Pestano, G. A.; Riley, J.; Hasan, A. S.; Pezzano, M.; Samms, M.; Park, K. J.; Guyden, J.; Boto, W. M. A single point mutation in HIV-1 V3 loop alters the immunogenic properties of rgp120 Arch. Virol. 2000, 145 (10) 2087-103
-
(2000)
Arch. Virol.
, vol.145
, Issue.10
, pp. 2087-2103
-
-
Lee, S.K.1
Pestano, G.A.2
Riley, J.3
Hasan, A.S.4
Pezzano, M.5
Samms, M.6
Park, K.J.7
Guyden, J.8
Boto, W.M.9
-
41
-
-
54949111659
-
Neutralizing activity of antibodies to the V3 loop region of HIV-1 gp120 relative to their epitope fine specificity
-
Pantophlet, R.; Wrin, T.; Cavacini, L. A.; Robinson, J. E.; Burton, D. R. Neutralizing activity of antibodies to the V3 loop region of HIV-1 gp120 relative to their epitope fine specificity Virology 2008, 381 (2) 251-60
-
(2008)
Virology
, vol.381
, Issue.2
, pp. 251-260
-
-
Pantophlet, R.1
Wrin, T.2
Cavacini, L.A.3
Robinson, J.E.4
Burton, D.R.5
-
42
-
-
20544458737
-
Restricted variable residues in the C-terminal segment of HIV-1 V3 loop regulate the molecular anatomy of CCR5 utilization
-
DOI 10.1016/j.jmb.2005.05.024, PII S0022283605005553
-
Hu, Q.; Napier, K. B.; Trent, J. O.; Wang, Z.; Taylor, S.; Griffin, G. E.; Peiper, S. C.; Shattock, R. J. Restricted variable residues in the C-terminal segment of HIV-1 V3 loop regulate the molecular anatomy of CCR5 utilization J. Mol. Biol. 2005, 350 (4) 699-712 (Pubitemid 40848668)
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.4
, pp. 699-712
-
-
Hu, Q.1
Napier, K.B.2
Trent, J.O.3
Wang, Z.4
Taylor, S.5
Griffin, G.E.6
Peiper, S.C.7
Shattock, R.J.8
-
43
-
-
0032954629
-
Global and local structural properties of the principal neutralizing determinant of the HIV-1 envelope protein gp120
-
Andrianov, A. M. Global and local structural properties of the principal neutralizing determinant of the HIV-1 envelope protein gp120 J. Biomol. Struct. Dyn. 1999, 16 (4) 931-53 (Pubitemid 29157661)
-
(1999)
Journal of Biomolecular Structure and Dynamics
, vol.16
, Issue.4
, pp. 931-953
-
-
Andrianov, A.M.1
-
44
-
-
0027325038
-
Crystal structure of a human immunodeficiency virus type 1 neutralizing antibody, 50.1, in complex with its V3 loop peptide antigen
-
Rini, J. M.; Stanfield, R. L.; Stura, E. A.; Salinas, P. A.; Profy, A. T.; Wilson, I. A. Crystal structure of a human immunodeficiency virus type 1 neutralizing antibody, 50.1, in complex with its V3 loop peptide antigen Proc. Natl. Acad. Sci. U. S. A. 1993, 90 (13) 6325-9 (Pubitemid 23191508)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.13
, pp. 6325-6329
-
-
Rini, J.M.1
Stanfield, R.L.2
Stura, E.A.3
Salinas, P.A.4
Profy, A.T.5
Wilson, I.A.6
-
45
-
-
0242331318
-
Recurring conformation of the human immunodeficiency virus type 1 gp120 V3 loop
-
DOI 10.1016/S0042-6822(03)00525-7
-
Stanfield, R. L.; Ghiara, J. B.; Ollmann Saphire, E.; Profy, A. T.; Wilson, I. A. Recurring conformation of the human immunodeficiency virus type 1 gp120 V3 loop Virology 2003, 315 (1) 159-73 (Pubitemid 37340058)
-
(2003)
Virology
, vol.315
, Issue.1
, pp. 159-173
-
-
Stanfield, R.L.1
Ghiara, J.B.2
Saphire, E.O.3
Profy, A.T.4
Wilson, I.A.5
-
46
-
-
0028938818
-
Local and global structural properties of the HIV-MN V3 loop
-
Catasti, P.; Fontenot, J. D.; Bradbury, E. M.; Gupta, G. Local and global structural properties of the HIV-MN V3 loop J. Biol. Chem. 1995, 270 (5) 2224-32
-
(1995)
J. Biol. Chem.
, vol.270
, Issue.5
, pp. 2224-2232
-
-
Catasti, P.1
Fontenot, J.D.2
Bradbury, E.M.3
Gupta, G.4
-
47
-
-
0027484986
-
Solution structure of the V3 loop of a Thailand HIV isolate
-
Gupta, G.; Anantharamaiah, G. M.; Scott, D. R.; Eldridge, J. H.; Myers, G. Solution structure of the V3 loop of a Thailand HIV isolate J. Biomol. Struct. Dyn. 1993, 11 (2) 345-66 (Pubitemid 23328119)
-
(1993)
Journal of Biomolecular Structure and Dynamics
, vol.11
, Issue.2
, pp. 345-366
-
-
Gupta, G.1
Anantharamaiah, G.M.2
Scott, D.R.3
Eldridge, J.H.4
Myers, G.5
-
48
-
-
0026002948
-
Solution conformational preferences of immunogenic peptides derived from the principal neutralizing determinant of the HIV-1 envelope glycoprotein gp120
-
Chandrasekhar, K.; Profy, A. T.; Dyson, H. J. Solution conformational preferences of immunogenic peptides derived from the principal neutralizing determinant of the HIV-1 envelope glycoprotein gp120 Biochemistry 1991, 30 (38) 9187-94
-
(1991)
Biochemistry
, vol.30
, Issue.38
, pp. 9187-9194
-
-
Chandrasekhar, K.1
Profy, A.T.2
Dyson, H.J.3
-
49
-
-
0030913036
-
NMR study of the peptide present in the principal neutralizing determinant (PND) of HIV-1 envelope glycoprotein gp120
-
DOI 10.1016/S0165-022X(97)01205-0, PII S0165022X97012050
-
Sarma, A. V.; Raju, T. V.; Kunwar, A. C. NMR study of the peptide present in the principal neutralizing determinant (PND) of HIV-1 envelope glycoprotein gp120 J. Biochem. Biophys. Methods 1997, 34 (2) 83-98 (Pubitemid 27204968)
-
(1997)
Journal of Biochemical and Biophysical Methods
, vol.34
, Issue.2
, pp. 83-98
-
-
Sarma, A.V.S.1
Raju, T.V.2
Kunwar, A.C.3
-
50
-
-
0029670024
-
Conformational features of a synthetic cyclic peptide corresponding to the complete V3 loop of the RF HIV-1 strain in water and water/trifluoroethanol solutions
-
Vranken, W. F.; Budesinsky, M.; Martins, J. C.; Fant, F.; Boulez, K.; Gras-Masse, H.; Borremans, F. A. Conformational features of a synthetic cyclic peptide corresponding to the complete V3 loop of the RF HIV-1 strain in water and water/trifluoroethanol solutions Eur. J. Biochem. 1996, 236 (1) 100-8
-
(1996)
Eur. J. Biochem.
, vol.236
, Issue.1
, pp. 100-108
-
-
Vranken, W.F.1
Budesinsky, M.2
Martins, J.C.3
Fant, F.4
Boulez, K.5
Gras-Masse, H.6
Borremans, F.A.7
-
51
-
-
0029877461
-
Conformational preferences of a chimeric peptide HIV-1 immunogen from the C4-V3 domains of gp120 envelope protein of HIV-1 CAN0A based on solution NMR: Comparison to a related immunogenic peptide from HIV-1 RF
-
Vu, H. M.; de Lorimier, R.; Moody, M. A.; Haynes, B. F.; Spicer, L. D. Conformational preferences of a chimeric peptide HIV-1 immunogen from the C4-V3 domains of gp120 envelope protein of HIV-1 CAN0A based on solution NMR: comparison to a related immunogenic peptide from HIV-1 RF Biochemistry 1996, 35 (16) 5158-65
-
(1996)
Biochemistry
, vol.35
, Issue.16
, pp. 5158-5165
-
-
Vu, H.M.1
De Lorimier, R.2
Moody, M.A.3
Haynes, B.F.4
Spicer, L.D.5
-
52
-
-
0027221813
-
Cyclic V3-loop-related HIV-1 conjugate vaccines. Synthesis, conformation and immunological properties
-
Tolman, R. L.; Bednarek, M. A.; Johnson, B. A.; Leanza, W. J.; Marburg, S.; Underwood, D. J.; Emini, E. A.; Conley, A. J. Cyclic V3-loop-related HIV-1 conjugate vaccines. Synthesis, conformation and immunological properties Int. J. Pept. Protein Res. 1993, 41 (5) 455-66 (Pubitemid 23144740)
-
(1993)
International Journal of Peptide and Protein Research
, vol.41
, Issue.5
, pp. 455-466
-
-
Tolman, R.L.1
Bednarek, M.A.2
Johnson, B.A.3
Leanza, W.J.4
Marburg, S.5
Underwood, D.J.6
Emini, E.A.7
Conley, A.J.8
-
53
-
-
0031557396
-
NMR structure of the principal neutralizing determinant of HIV-1 displayed in filamentous bacteriophage coat protein
-
DOI 10.1006/jmbi.1996.0821
-
Jelinek, R.; Terry, T. D.; Gesell, J. J.; Malik, P.; Perham, R. N.; Opella, S. J. NMR structure of the principal neutralizing determinant of HIV-1 displayed in filamentous bacteriophage coat protein J. Mol. Biol. 1997, 266 (4) 649-55 (Pubitemid 27113205)
-
(1997)
Journal of Molecular Biology
, vol.266
, Issue.4
, pp. 649-655
-
-
Jelinek, R.1
Terry, T.D.2
Gesell, J.J.3
Malik, P.4
Perham, R.N.5
Opella, S.J.6
-
54
-
-
0033080945
-
Dual conformations for the HIV-1 gp120 V3 loop in complexes with different neutralizing Fabs
-
DOI 10.1016/S0969-2126(99)80020-3
-
Stanfield, R.; Cabezas, E.; Satterthwait, A.; Stura, E.; Profy, A.; Wilson, I. Dual conformations for the HIV-1 gp120 V3 loop in complexes with different neutralizing fabs Structure 1999, 7 (2) 131-42 (Pubitemid 29159699)
-
(1999)
Structure
, vol.7
, Issue.2
, pp. 131-142
-
-
Stanfield, R.L.1
Cabezas, E.2
Satterthwait, A.C.3
Stura, E.A.4
Profy, A.T.5
Wilson, I.A.6
-
55
-
-
0036283987
-
Local structural properties of the V3 loop of Thailand HIV-1 isolate
-
Andrianov, A. M. Local structural properties of the V3 loop of Thailand HIV-1 isolate J. Biomol. Struct. Dyn. 2002, 19 (6) 973-89 (Pubitemid 34701118)
-
(2002)
Journal of Biomolecular Structure and Dynamics
, vol.19
, Issue.6
, pp. 973-989
-
-
Andrianov, A.M.1
-
56
-
-
0034844325
-
Conformational model for the consensus v3 loop of the envelope protein gp120 of hiv-1 in a 20% trifluoroethanol/water solution
-
DOI 10.1046/j.1432-1327.2001.02146.x
-
Vranken, W. F.; Fant, F.; Budesinsky, M.; Borremans, F. A. Conformational model for the consensus V3 loop of the envelope protein gp120 of HIV-1 in a 20% trifluoroethanol/water solution Eur. J. Biochem. 2001, 268 (9) 2620-8 (Pubitemid 32853000)
-
(2001)
European Journal of Biochemistry
, vol.268
, Issue.9
, pp. 2620-2628
-
-
Vranken, W.F.1
Fant, F.2
Budesinsky, M.3
Borremans, F.A.M.4
-
57
-
-
77954191991
-
Structural conservation predominates over sequence variability in the crown of HIV type 1's V3 loop
-
Almond, D.; Kimura, T.; Kong, X.; Swetnam, J.; Zolla-Pazner, S.; Cardozo, T. Structural conservation predominates over sequence variability in the crown of HIV type 1's V3 loop AIDS Res. Hum. Retroviruses 2010, 26 (6) 717-23
-
(2010)
AIDS Res. Hum. Retroviruses
, vol.26
, Issue.6
, pp. 717-723
-
-
Almond, D.1
Kimura, T.2
Kong, X.3
Swetnam, J.4
Zolla-Pazner, S.5
Cardozo, T.6
-
58
-
-
77955417928
-
Conserved structural elements in the V3 crown of HIV-1 gp120
-
Jiang, X.; Burke, V.; Totrov, M.; Williams, C.; Cardozo, T.; Gorny, M. K.; Zolla-Pazner, S.; Kong, X. P. Conserved structural elements in the V3 crown of HIV-1 gp120 Nat. Struct. Mol. Biol. 2010, 17 (8) 955-61
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, Issue.8
, pp. 955-961
-
-
Jiang, X.1
Burke, V.2
Totrov, M.3
Williams, C.4
Cardozo, T.5
Gorny, M.K.6
Zolla-Pazner, S.7
Kong, X.P.8
-
59
-
-
0036520840
-
A review of protein-small molecule docking methods
-
Taylor, R. D.; Jewsbury, P. J.; Essex, J. W. A review of protein-small molecule docking methods J. Comput.-Aided Mol. Des. 2002, 16 (3) 151-66
-
(2002)
J. Comput.-Aided Mol. Des.
, vol.16
, Issue.3
, pp. 151-166
-
-
Taylor, R.D.1
Jewsbury, P.J.2
Essex, J.W.3
-
60
-
-
77949342214
-
3D-QSAR in drug design - A review
-
Verma, J.; Khedkar, V. M.; Coutinho, E. C. 3D-QSAR in drug design-A review Curr. Top. Med. Chem. 2010, 10 (1) 95-115
-
(2010)
Curr. Top. Med. Chem.
, vol.10
, Issue.1
, pp. 95-115
-
-
Verma, J.1
Khedkar, V.M.2
Coutinho, E.C.3
-
61
-
-
0023346161
-
Free energy calculations by computer simulation
-
Bash, P. A.; Singh, U. C.; Langridge, R.; Kollman, P. A. Free energy calculations by computer simulation Science 1987, 236 (4801) 564-8 (Pubitemid 17069921)
-
(1987)
Science
, vol.236
, Issue.4801
, pp. 564-568
-
-
Bash, P.A.1
Singh, U.C.2
Langridge, R.3
Kollman, P.A.4
|