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Volumn 27, Issue 21, 2011, Pages 3076-3077

wapRNA: A web-based application for the processing of RNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA;

EID: 80054902457     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr504     Document Type: Article
Times cited : (51)

References (20)
  • 1
    • 77955963884 scopus 로고    scopus 로고
    • Comprehensive modeling of microRNAtargets predicts functional non-conserved and non-canonical sites
    • Betel,D. et al. (2010) Comprehensive modeling of microRNAtargets predicts functional non-conserved and non-canonical sites. Genome Biol., 11, R90.
    • (2010) Genome Biol , vol.11
    • Betel, D.1
  • 2
    • 77954302477 scopus 로고    scopus 로고
    • rQuant.web: a tool for RNA-Seq-based transcript quantitation
    • Bohnert,R. and Ratsch,G. (2010) rQuant.web: a tool for RNA-Seq-based transcript quantitation. Nucleic Acids Res., 38, W348-W351.
    • (2010) Nucleic Acids Res. , vol.38
    • Bohnert, R.1    Ratsch, G.2
  • 3
    • 77955852762 scopus 로고    scopus 로고
    • Novel microRNAs in silkworm (Bombyx mori)
    • Cai,Y. et al. (2010) Novel microRNAs in silkworm (Bombyx mori). Funct. Integr. Genomics, 10, 405-415.
    • (2010) Funct. Integr. Genomics , vol.10 , pp. 405-415
    • Cai, Y.1
  • 4
    • 78649449778 scopus 로고    scopus 로고
    • A comparison between ribo-minus RNA-sequencing and polyAselected RNA-sequencing
    • Cui,P. et al. (2010) A comparison between ribo-minus RNA-sequencing and polyAselected RNA-sequencing. Genomics, 96, 259-265.
    • (2010) Genomics , vol.96 , pp. 259-265
    • Cui, P.1
  • 5
    • 41849084855 scopus 로고    scopus 로고
    • Discovering microRNAs from deep sequencing data using miRDeep
    • Friedlander,M.R. et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol., 26, 407-415.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 407-415
    • Friedlander, M.R.1
  • 6
    • 79952314593 scopus 로고    scopus 로고
    • A pipeline for RNA-seq data processing and quality assessment
    • Goncalves,A. et al. (2011) A pipeline for RNA-seq data processing and quality assessment. Bioinformatics, 27, 867-869.
    • (2011) Bioinformatics , vol.27 , pp. 867-869
    • Goncalves, A.1
  • 7
    • 33749059160 scopus 로고    scopus 로고
    • miRBase: the microRNA sequence database
    • Griffiths-Jones,S. (2006) miRBase: the microRNA sequence database. Methods Mol. Biol., 342, 129-138.
    • (2006) Methods Mol. Biol. , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 8
    • 38549150275 scopus 로고    scopus 로고
    • miRBase: tools for microRNA genomics
    • Griffiths-Jones,S. et al. (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res., 36, D154-D158.
    • (2008) Nucleic Acids Res. , vol.36
    • Griffiths-Jones, S.1
  • 9
    • 67849114241 scopus 로고    scopus 로고
    • miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
    • Hackenberg,M. et al. (2009) miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res., 37, W68-W76.
    • (2009) Nucleic Acids Res. , vol.37
    • Hackenberg, M.1
  • 10
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Harris,M.A. et al.; Consortium,G.O. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
    • (2004) Nucleic Acids Res. , vol.32
    • Harris, M.A.1    Consortium, G.O.2
  • 11
    • 77954304695 scopus 로고    scopus 로고
    • DSAP: deep-sequencing small RNA analysis pipeline
    • Huang,P.J. et al. (2010) DSAP: deep-sequencing small RNA analysis pipeline. Nucleic Acids Res., 38, W385-W391.
    • (2010) Nucleic Acids Res. , vol.38
    • Huang, P.J.1
  • 12
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa,M. and Goto,S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 13
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: microRNA target prediction easy, fast and flexible
    • Kruger,J. and Rehmsmeier,M. (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res., 34, W451-W454.
    • (2006) Nucleic Acids Res. , vol.34
    • Kruger, J.1    Rehmsmeier, M.2
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 15
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin R.D. et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res., 18, 610-621.
    • (2008) Genome Res. , vol.18 , pp. 610-621
    • Morin, R.D.1
  • 16
    • 52949088691 scopus 로고    scopus 로고
    • A toolkit for analysing large-scale plant small RNA datasets
    • Moxon,S. et al. (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24, 2252-2253.
    • (2008) Bioinformatics , vol.24 , pp. 2252-2253
    • Moxon, S.1
  • 17
    • 77954276691 scopus 로고    scopus 로고
    • MAGIA, a web-based tool for miRNA and Genes Integrated Analysis
    • Sales,G. et al. (2010) MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res., 38, W352-W359.
    • (2010) Nucleic Acids Res. , vol.38
    • Sales, G.1
  • 18
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • Wang,L.K. et al. (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics, 26, 136-138.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.K.1
  • 19
    • 77950396799 scopus 로고    scopus 로고
    • Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing
    • Wu,J.Q. et al. (2010) Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing. Proc. Natl Acad. Sci. USA, 107, 5254-5259.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 5254-5259
    • Wu, J.Q.1
  • 20
    • 77954330416 scopus 로고    scopus 로고
    • mirTools: microRNA profiling and discovery based on highthroughput sequencing
    • Zhu,E. et al. (2010) mirTools: microRNA profiling and discovery based on highthroughput sequencing, Nucleic Acids Res., 38, W392-W397.
    • (2010) Nucleic Acids Res. , vol.38
    • Zhu, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.