Worldwide genotyping in the planktonic foraminifer globoconella inflata: Implications for life history and paleoceanography

PLoS ONE

Volumn 6, Issue 10, 2011, Pages

  Morard, Raphaël ^a,b   Quillévéré, Frédéric ^a   Douady, Christophe J ^c,d   de Vargas, Colomban ^b   de Garidel Thoron, Thibault ^e,f   Escarguel, Gilles ^a  

^a UNIVERSITÉ LYON 1   (France)

^b STATION BIOLOGIQUE DE ROSCOFF   (France)

^c UNIVERSITÉ LYON 1   (France)

^d INSTITUT UNIVERSITAIRE DE FRANCE   (France)

^e AIX MARSEILLE UNIVERSITY   (France)

^f CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RIBOSOME DNA; RIBOSOMAL SPACER DNA;

ARTICLE; BIOGEOGRAPHY; BIOMETRY; CONTROLLED STUDY; DNA SEQUENCE; GENETIC VARIABILITY; GENOTYPE; GLOBOCONELLA INFLATA; LIFE HISTORY; MOLECULAR PHYLOGENY; MORPHOLOGICAL TRAIT; NONHUMAN; NUCLEOTIDE SEQUENCE; PALEOCEANOGRAPHY; PLANKTONIC FORAMINIFERA; SPECIES DISTRIBUTION; CLASSIFICATION; FORAMINIFER; FOSSIL; GENETICS; GENOTYPING TECHNIQUE; INTERNATIONAL COOPERATION; PHYLOGENY; PHYLOGEOGRAPHY; PLANKTON; SEA;

FORAMINIFERA; GLOBOCONELLA;

BIOMETRY; DNA, RIBOSOMAL SPACER; FORAMINIFERA; FOSSILS; GENETIC VARIATION; GENOTYPING TECHNIQUES; INTERNATIONALITY; OCEANS AND SEAS; PHYLOGENY; PHYLOGEOGRAPHY; PLANKTON;

EID: 80054784079     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026665     Document Type: Article

References (61)

1. Bé AWH, (1977) An ecological, zoogeographic and taxonomic review of recent planktonic foraminifera; A.T.S., editor London Academic Press.
2. Brayard A, Escarguel G, Bucher H, (2005) Latitudinal gradient of taxonomic richness: combined outcome of temperature and geographic mid-domains effects? Journal of Zoological Systematics and Evolutionary Research 43: 178-188.
3. Kucera M, Rosell-Melé A, Schneider R, Waelbroeck C, Weinelt M, (2005) Multiproxy approach for the reconstruction of the glacial ocean surface (MARGO). Quaternary Science Reviews 24: 813-819.
4. Katz ME, Cramer BS, Franzese A, Hönisch B, Miller KG, et al. (2010) Traditional and emerging geochemical proxies in foraminifera. Journal of Foraminiferal Research 40: 165-192.
5. Bolli HM, Saunders JB, (1985) Oligocene to Holocene low latitude planktic foraminifera. In: Bolli HM, Saunders JB, Perch-Nielsen K, editors. Plankton Stratigraphy Cambridge Cambridge University Press pp. 228-301.
6. Kennett JP, Srinivasan MS, (1983) Neogene Planktonic Foraminifera: A Phylogenetic Atlas PA (Hutchinson Ross) Stroudsburg.
7. Darling KF, Wade CM, (2008) The genetic diversity of planktic foraminifera and the global distribution of ribosomal RNA genotypes. Marine Micropaleontology 67: 216-238.
8. Vargas Cd, Bonzon M, Rees NW, Pawlowski J, Zaninetti L, (2002) A molecular approach to biodiversity and biogeography in the planktonic foraminifer Globigerinella siphonifera (d'Orbigny). Marine Micropaleontology 45: 101-116.
9. Vargas Cd, Norris RD, Zaninetti L, Gibb SW, Pawlowski J, (1999) Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces. Proceedings of the National Academy of Sciences U S A 96: 2864-2868.
10. Vargas Cd, Renaud S, Hilbrecht H, Pawlowski J, (2001) Pleistocene adaptive radiation in Globorotalia truncatulinoides: genetic, morphologic, and environmental evidence. Paleobiology 27: 104-125.
11. Aurahs R, Treis Y, Darling K, Kucera M, (2011) A revised taxonomic and phylogenetic concept for the planktonic foraminifer species Globigerinoides ruber based on molecular and morphometric evidence. Marine Micropaleontology 79: 1-14.
12. Huber BT, Bijma J, Darling KF, (1997) Cryptic speciation in the living planktonic foraminifer Globigerinella siphonifera (d'Orbigny). Paleobiology 23: 33-62.
13. Morard R, Quillévéré F, Escarguel G, Ujiié Y, De Garidel Thoron T, et al. (2009) Morphological recognition of cryptic species in the planktonic foraminifer Orbulina universa. Marine Micropaleontology 71: 148-165.
14. Quillévéré F, Morard R, Escarguel G, Douady CJ, Ujiié Y, et al. (2011) Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: A perspective on the morphological species concept in planktonic foraminifera. Palaeogeography, Palaeoclimatology, Palaeoecology In Press.
15. Knowlton N, (1993) Sibling Species in the Sea. Annual Review of Ecology and Systematics 24: 189-216.
16. Scott GH, Kennett JP, Wilson KJ, Hayward BW, (2007) Globorotalia puncticulata: Population divergence, dispersal and extinction related to Pliocene-Quaternary water masses. Marine Micropaleontology 62: 235-253.
17. Berggren WA, Kent DV, Swisher CC III, Aubry M-P, (1995) A revised cenozoic geochronology and chronostratigraphy. In: Berggren WA, Kent DV, Aubry MP, Hardenbol J, editors. Geochronology, Time Scales, and Global Stratigraphic Correlation: Society of Sedimentary Geology pp. 129-212.
18. Fairbanks RG, Sverdlove M, Free R, Wiebe PH, Be AWH, (1982) Vertical distribution and isotopic fractionation of living planktonic foraminifera from the Panama Basin. Nature 298: 841-844.
19. Wilke I, Bickert T, Peeters FJC, (2006) The influence of seawater carbonate ion concentration [CO32-] on the stable carbon isotope composition of the planktic foraminifera species Globorotalia inflata. Marine Micropaleontology 58: 243-258.
20. Pawlowski J, (2000) Introduction to the molecular systematics of foraminifera. Micropaleontology 46: 1-12.
21. Bowser SS, Habura A, Pawlowski J, (2006) Molecular evolution of foraminifera. In: Katz LA, Bhattacharya D, editors. Genomics and evolution of microbial eucaryotes Oxford University Press, Oxford pp. 78-93.
22. Gouy M, Guindon S, Gascuel O, (2010) SeaView Version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221-224.
23. Pawlowski J, Fahrni J, Lecroq B, Longet D, Cornelius N, et al. (2007) Bipolar gene flow in deep sea benthic foraminifera. Molecular Ecology 16: 4089-4096.
24. Darling KF, Wade CM, Stewart IA, Kroon D, Dingle R, et al. (2000) Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers. Nature 405: 43-47.
25. Prell WL, Martin A, Cullen JL, Trend M, (1999) The Brown University Foraminiferal Data Base. IGBP PAGES/World Data Center-A for Paleoclimatology, Data Contribution Series # 1999-027, NOAA/NGDC Paleoclimatology Program, Boulder CO, USA.
26. Locarnini RA, Mishonov AV, Antonov JI, Boyer TP, Garcia HE, (2006) World Ocean Atlas 2005. Volume 1: Temperature S Levitus: NOAA Atlas NESDIS 61, U.S. Government Printing Office, Washington, D.C.
27. Dietrich G, Kalle K, Krauss W, Sielder G, eds. (1980) General Oceanography. 2nd ed New York John Wiley and Sons (Wiley-Interscience).
28. Aurahs R, Grimm GW, Hemleben V, Hemleben C, Kucera M, (2009) Geographical distribution of cryptic genetic types in the planktonic foraminifer Globigerinoides ruber. Molecular Ecology 18: 1692-1706.
29. Kustanowich S, (1963) Distribution of planktonic foraminifera in surface sediments of the south-west Pacific Ocean. New Zealand Journal of Geology and Geophysics 6: 534-565.
30. Amato A, Kooistra WHCF, Hee Levialdi Ghiron J, Mann DG, Pröschold T, et al. (2007) Reproductive isolation among sympatric cryptic species in marine diatoms. Protist 18: 193-207.
31. Behnke A, Friedl T, Chepurnov VA, Mann DG, (2004) Reproductive compatibility and rDNA sequence analyses in the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology 40: 193-208.
32. Beszteri B, Ács É, Medlin LK, (2005) Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity. Protist 156: 317-333.
33. Casteleyn G, Chepurnov VA, Leliaert F, Mann DG, Bates SS, et al. (2008) Pseudo-nitzschia pungens (Bacillariophyceae): a cosmopolitan diatom species? Harmful Algae 7: 241-257.
34. Van Oppen MJH, Miedog JC, Sanchez CA, Fabricius KE, (2005) Diversity of algal endosymbionts (zooxanthellae) in octocorals: the roles of geography and host relationships. Molecular Ecology 14: 2403-2417.
35. Vanormelingen P, Chepurnov VA, Mann DG, Sabbe K, Vyverman W, (2008) Genetic divergence and reproductive barriers among morphologically heterogeneous sympatric clones of Eunotia bilunaris sensu lato (Bacillariophyta). Protist 159: 73-90.
36. Thornhill DJ, Lajeunesse TC, Santos SR, (2007) Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Molecular Ecology 16: 5326-5340.
37. De Queiroz K, (2007) Species concepts and species delimitation. Systematic Biology 56: 879-886.
38. Norris RD, Corfield RM, Cartlidge JE, (1994) Evolutionary ecology of Globorotalia (Globoconella) (planktic foraminifera). Marine Micropaleontology 23: 121-145.
39. Keany J, Kennett JP, (1972) Pliocene-early Pleistocene paleoclimatic history recorded in Antarctic-Subantarctic deep-sea cores. Deep Sea Research 19: 539-548.
40. Kennett JP, (1970) Pleistocene paleoclimates and foraminiferal biostratigraphy in subantarctic deep-sea cores. Deep Sea Research 17: 127-140.
41. Norris RD, (2000) Pelagic species diversity, biogeography and evolution. Paleobiology 26: 236-258.
42. Darling KF, Kucera M, Kroon D, Wade CM, (2006) A resolution for the coiling direction paradox in Neogloboquadrina pachyderma. Paleoceanography 21: 1-14.
43. Darling KF, Kucera M, Pudsey CJ, Wade CM, (2004) Molecular evidence links cryptic diversification in polar planktonic protists to Quaternary climate dynamics. Proceedings of the National Academy of Sciences U S A 101: 7657-7662.
44. Darling KF, Kucera M, Wade CM, (2007) Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist. Proceedings of the National Academy of Sciences U S A 104: 5002-5007.
45. Darling KF, Kucera M, Wade CM, Langen Pv, Pak D, (2003) Seasonal distribution of genetic types of planktonic foraminifer morphospecies in the Santa Barbara Channel and its paleoceanographic implications. Paleoceanography 18: 1032-1042.
46. Stewart IA, Darling KF, Kroon D, Wade CM, Troelstra SR, (2001) Genotypic variability in subarctic Atlantic planktic foraminifera. Marine Micropaleontology 43: 143-153.
47. Cléroux C, Cortijo E, Duplessy J-C, (2007) Deep-dwelling foraminifera as thermocline temperature recorders. Geochemistery, Geophysics, Geosystems 8: 1-19.
48. Farmer EC, Kaplan A, de Menocal PB, Lynch-Stieglitz J, (2007) Corroborating ecological depth preferences of planktonic foraminifera in the tropical Atlantic with the stable oxygen isotope ratios of core top specimens. Paleoceanography 22: 1-14.
49. Ganssen GM, Kroon D, (2000) The isotopic signature of planktonic foraminifera from NE Atlantic surface sediments: implications for the reconstruction of past oceanic conditions. Journal of Geological Society, London 157: 693-699.
50. Keigwin L, Bice M, Copley N, (2005) Seasonality and stable isotopes in planktonic foraminifera off Cape Cod, Massachusetts. Paleoceanography 20: 1-9.
51. Ravelo CA, Fairbanks RG, (1992) Oxygen isotopic composition of multiple species of planktonic foraminifera: recorders of the modern photic zone temperature gradient. Paleoceanography 7: 815-831.
52. Chiessi CM, Ulrich S, Mulitza S, Pätzold J, Wefer G, (2007) Signature of the Brazil-Malvinas Confluence (Argentine Basin) in the isotopic composition of planktonic foraminifera from surface sediments. Marine Micropaleontology 64: 52-66.
53. King AL, Howard WR, (2005) δ18O seasonality of planktonic foraminifera from Southern Ocean sediment traps: Latitudinal gradients and implications for paleoclimate reconstructions. Marine Micropaleontology 56: 1-24.
54. Martínez-Garcia A, Rosell-Melé A, Geibert W, Gersonde R, Masqué P, et al. (2009) Links between iron supply, marine productivity, sea surface temperature, and CO2 over the last 1.1 Ma. Paleoceanography 24: PA1207.
55. Martinez-Garcia A, Rosell-Mele A, McClymont EL, Gersonde R, Haug GH, (2010) Subpolar link to the emergence of the modern equatorial Pacific cold tongue. Science 328: 1550-1553.
56. Posada D, (2008) jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25: 1253-1256.
57. Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
58. Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
59. Sokal RR, Rohlf FJ, (1995) Biometry: the principles and practice of statistics in biological research New York Freeman.
60. Hammer Ø, Harper DAT, Ryan PD, (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4: 1-9.
61. Carter L, McCave IN, Williams MJM, Fabio F, Martin S, (2008) Chapter 4 circulation and water masses of the southern ocean: a review Developments in Earth and Environmental Sciences: Elsevier pp. 85-114.