Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity

Protist

Volumn 156, Issue 3, 2005, Pages 317-333

  Beszteri, Bánk ^a   Ács, Éva ^b   Medlin, Linda K ^a  

^a ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

Cryptic diversity; Cyclotella meneghiniana; Diatom; Microdiversity; rDNA

Indexed keywords

BACILLARIOPHYCEAE; BACILLARIOPHYTA; CYCLOTELLA MENEGHINIANA;

EID: 27544490635     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2005.07.002     Document Type: Article

References (54)

1. I. Álvarez, and J.F. Wendel Ribosomal ITS sequences and plant phylogenetic inference Mol Phylogenet Evol 29 2003 417 434
2. B. Beszteri, É. Ács, and L.K. Medlin Conventional and geometric morphometric studies of valve ultrastructural variation in two closely related Cyclotella species (Bacillariophyceae) Eur J Phycol 40 2005 89 103
3. Bourne CEM (1992) Chloroplast DNA structure, variation and phylogeny in closely related species of Cyclotella. PhD Dissertation, University of Michigan
4. C.E.M. Bourne, J.D. Palmer, and E.F. Stoermer Organization of the chloroplast genome of the freshwater centric diatom Cyclotella meneghiniana J Phycol 28 1992 347 355
5. C. Büchel Fucoxanthin-chlorophyll proteins in diatoms: 18 and 19 kDa subunits assemble into different oligomeric states Biochemistry 42 2003 13027 13034
6. A. Clark Inference of haplotypes from PCR-amplified samples of diploid populations Mol Biol Evol 7 1990 111 122
7. A.W. Coleman The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence Protist 151 2000 1 9
8. C. De Vargas, A.G. Sáez, L.K. Medlin, and H.R. Thierstein Super-Species in the Calcareous Plankton H.R. Thierstein J.R. Young Coccolithophores. From Molecular Processes to Global Impact 2004 Springer Berlin, Heidelberg, New York 271 298
9. C. De Vargas, R. Norris, L. Zaninetti, S.W. Gibb, and J. Pawlowski Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces Proc Natl Acad Sci USA 96 1999 2864 2868
10. J.J. Doyle, and J.L. Doyle Isolation of plant DNA from fresh tissue Focus 12 1990 13 15
11. G. Drebes Sexuality D. Werner The Biology of Diatoms 1977 Blackwell Scientific Publications Oxford 250 283
12. H. Elwood, G. Olsen, and M. Sogin The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata Mol Biol Evol 2 1985 399 410
13. L. Excoffier, P.E. Smouse, and J.M. Quattro Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data Genetics 131 1992 479 491
14. B.J. Finlay, E.B. Monaghan, and S.C. Maberly Hypothesis: the rate and scale of dispersal of freshwater diatom species is a function of their global abundance Protist 153 2002 261 273
15. H. Håkansson Cyclotella meneghiniana Kütz. (Bacillariophyceae), its morphology and reappraisal of similar species Nova Hedw Beih 100 1990 19 37
16. H. Håkansson Phenotypic plasticity in the diatom Cyclotella meneghiniana or a new species? Nova Hedw 66 1998 187 196
17. H. Håkansson A compilation and evaluation of species in the genera Stephanodiscus, Cyclostephanos and Cyclotella with a new genus in the family Stephanodiscaceae Diatom Res 17 2002 1 139
18. H. Håkansson, and V. Chepurnov A study of variation in valve morphology of the diatom Cyclotella meneghiniana in monoclonal cultures: effect of auxospore formation and different salinity conditions Diatom Res 14 1999 251 272
19. M.O.P. Iyengar, and R. Subrahmanyan On reduction division and auxospore formation in Cyclotella meneghiniana Kütz J Ind Bot Sci 23 1944 125 152
20. S. Kumar, K. Tamura, I. Jakobsen, and M. Nei MEGA2: Molecular Evolutionary Genetics Analysis Software 2001 Arizona State University Tempe, Arizona, USA
21. J. Lewandowska, and A. Kosakowska Effect of iron limitation on cells of the diatom Cyclotella meneghiniana Kützing Oceanologia 46 2004 269 287
22. K.S. Lole, R.C. Bollinger, R.S. Paranjape, D. Gadkari, S.S. Kulkarni, N.G. Novak, R. Ingersoll, H.W. Sheppard, and S.C. Ray Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination J Virol 73 1999 152 160
23. J.W. Louda, L. Liu, and E.W. Baker Senescence- and death-related alteration of chlorophylls and carotenoids in marine phytoplankton Org Geochem 33 2002 1635 1653
24. N. Lundholm, Ø. Moestrup, G.R. Hasle, and K. Hoef-Emden A study of the Pseudo-nitzschia pseudodelicatissima/cuspidata complex (Bacillariophyceae): what is P. pseudodelicatissima? J Phycol 39 2003 797 813
25. D.G. Mann The species concept in diatoms Phycologia 38 1999 437 495
26. L.K. Medlin Can molecular techniques help define species limits? Diatom 13 1997 19 23
27. L.K. Medlin, H.J. Elwood, S. Stickel, and M.L. Sogin The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions Gene 71 1988 491 499
28. L.K. Medlin, H.J. Elwood, S. Stickel, and M.L. Sogin Morphological and genetic variation within the diatom Skeletonema costatum (Bacillariophyceae): evidence for a new species, Skeletonema pseudocostatum J Phycol 27 1991 514 524
29. L.K. Medlin, W.H.C.F. Kooistra, R. Gersonde, and U. Wellbrock Evolution of the diatoms (Bacillariophyta): III. Molecular evidence for the origin of the Thalassiosirales Nova Hedw Beih 112 1996 221 234
30. D.F. Millie Nutrient-limitation effects on the biochemical composition of Cyclotella meneghiniana (Bacillariophyta): an experimental and statistical analysis Can J Bot 64 1986 19 26
31. M. Montresor, S. Sgrosso, G. Procaccini, and W. Kooistra Intraspecific diversity in Scrippsiella trochoidea (Dinophyceae): evidence or cryptic species Phycologia 42 2003 56 70
32. D. Posada Modeltest 3.06. Department of Zoology 1998 Brigham Young University Provo, USA
33. V.N.R. Rao Studies on Cyclotella meneghiniana Kütz, II: induction of auxospore formation Phykos 10 1971 84 98
34. V.N.R. Rao Size dependent reproductive behaviour in Cyclotella meneghiniana (Bacillariophyta) Nova Hedw Beih 112 1996 235 238
35. A.G. Sáez, and E. Lozano Body doubles Nature 433 2005 111
36. A.G. Sáez, I. Probert, M. Geisen, P. Quinn, J.R. Young, and L.K. Medlin Pseudo-cryptic speciation in coccolithophores Proc Natl Acad Sci USA 100 2003 7163 7168
37. M.O. Salminen, J.K. Carr, D.S. Burke, and F.E. McCutchan Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning AIDS Res Hum Retroviruses 11 1995 1423 1425
38. D. Sarno, W.H.C.F. Kooistra, L.K. Medlin, I. Percopo, and A. Zingone Diversity in the genus Skeletonema (Bacillariophyceae), II: an assessment of the taxonomy of S. costatum-like species with the description of four new species J Phycol 41 2005 151 176
39. C. Scholin, M. Herzog, M. Sogin, and D. Anderson Identification of group- and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). 2. Sequence analysis of a aragment of the LSU rRNA gene J Phycol 30 1994 999 1011
40. M.E. Schultz Salinity-related polymorphism in the brackish-water diatom Cyclotella cryptica Can J Bot 49 1971 1285 1289
41. M.E. Schultz, and F.R. Trainor Production of male gametes and auxospores in the centric diatoms Cyclotella meneghiniana and C. cryptica J Phycol 4 1968 85 88
42. N. Simon, J. Brenner, B. Edvardsen, and L.K. Medlin The identification of Chrysochromulina and Prymnesium species (Haptophyta, Prymnesiophyceae) using fluorescent or chemiluminescent oligonucleotide probes: a means for improving studies on toxic algae Eur J Phycol 32 1997 393 401
43. N. Simon, L. Campbell, E. Ornolfsdottir, R. Groben, L. Guillou, M. Lange, and L.K. Medlin Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization J Eukaryot Microbiol 47 2000 76 84
44. Swofford DL (1998) PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts
45. O. Tedrow, M.L. Julius, and H.L. Schoenfuss The effects of biogenically active compounds on Cyclotella meneghiniana (Bacillariophyta) J Phycol 38,S1 2002 34 35
46. J. Thompson, T. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 1997 4876 4882
47. M. Tibayrenc, and F.J. Ayala Towards a population genetics of microorganisms: the clonal theory of parasitic protozoa Parasitol Today 7 1991 228 232
48. M. Tibayrenc, and F.J. Ayala The clonal theory of parasitic protozoa: 12 years on Trends Parasitol 18 2002 405 410
49. M. Tibayrenc, F. Kjellberg, J. Arnaud, B. Oury, S.F. Breniere, M.L. Darde, and F.J. Ayala Are eukaryotic microorganisms clonal or sexual? A population genetics vantage Proc Natl Acad Sci USA 88 1991 5129 5133
50. M.L. Tuchman, E. Theriot, and E.F. Stoermer Effects of low level salinity concentrations on the growth of Cyclotella meneghiniana Kütz. (Bacillariophyta) Arch Protistenkd 128 1984 319 326
51. G.F. Weiller Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences Mol Biol Evol 15 1998 326 335
52. T.J. White, T. Bruns, S. Lee, and J. Taylor Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics M.A. Innis D.H. Gelfland J.J. Sninsky T.J. White PCR Protocols. Guide to Methods and Application 1990 Academic Press San Diego 315 322
53. F.W. Zechman, E.A. Zimmer, and E.C. Theriot Use of ribosomal DNA internal transcribed spacers for phylogenetic studies in diatoms J Phycol 30 1994 507 512
54. M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res 31 2003 3406 3415